pycom10g14330

Pantoate--beta-alanine

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr10
Physical Location & Seq
Reverse (-)
17699911 .. 17702054
2144 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1104 bp
ATGACCATTACTCTAATTAAGTTAAAATTGAGGGACTATTGCGTGACCCAACCTACCCGCCACATAAACGGTTTCCTCCTCACTTGTCACTTCACCTTTGCTTTCTTAAATTCCACCAATCCTTCTCTCTTTCCTCCTCAAAACGCTGATACAATGGCGGCCAAAGAACCAGAGATTATCAGGGACAAGGACCAGATGAGGAGGTGGTCACGCGCCATGAGAGCCCAAGGCAAGACCATCGGATTAGTACCCACAATGGGCTACCTCCACGAAGGACACGTTTCCCTCATCCGAGAAGCCCGCACCCACGCCGACGTCCTCGCCGTCTCGATCTACGTGAACCCGGGTCAGTTCGCCCCCTCCGAAGACCTCTCCACATACCCGTCCGATCTCCACGGCGACATCCGGAAGCTCACACAAATTCCCGGCGGCGTCGACGTCGTCTTCAACCCCCACAACCTGTACGACTACGGAGGAAGCACGGACGCAAGCGCACGTGCGAGTAATGGGGCGGTTAAGAGCGGCGGCTGCGAAACGGTGTCGTGCTTGGAGGACAAGGGGGTGGGGCACGAGACGTGGGTTAGGGTCGAGAGGTTGGAGAAGGGGATGTGCGGGCGGAGCAGGCCGGTGTTTTTCAGAGGGGTTGCGACGGTTGTGAGCAAGTTGTTTAATATCGTGGAGCCTGATGTTGCGGTGTTTGGGAAGAAGGATTATCAACAATGGCGGATAATTCAGCGGATGGTTCGAGATCTCGATTTTTCCGTTAGAGTGATAGGTTCTGAAATAGTGCGAGAAGACGATGGCCTGGCAATGAGTTCACGCAATGTGCGCCTCTCACCTGAAGAACGGGAAAAGGCACTGTCTATAAGCAAGTCATTGTCAGAAGCTAGATCTTCTGCAGAAAAGGGACAAGTTAATTGTAAAGAGTTGAGAGCCTTGGTCATCCAAGCGATTAGTGAAGCCGGTGGAAGAGTCGATTATGCTGAGATTGTCGACCAAGAAAGCTTGGAGTCGGTAGAAGAGATCAGAAGGCCTGTTGTGTTCTGTGTCGCTGCCTGGTTTGGAAAGGTTCGACTGATCGACAACATGGAGATCAACATATGA

Protein Analysis

368

Amino Acids

40.95

Weight (kDa)

7.08

Isoelectric Point (pI)

40.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pantoate_ligase PF02569 59 - 363 1.8e-98 Pantoate-beta-alanine ligase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0012476)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 2 cut(s) 318, 441
AccBSI CCGCTC 1 cut(s) 522
AccI GTMKAC 2 cut(s) 435, 993
AccII CGCG 1 cut(s) 213
AccIII TCCGGA 1 cut(s) 405
AcoI YGGCCR 1 cut(s) 159
AcsI RAATTY 2 cut(s) 109, 420
AcuI CTGAAG 1 cut(s) 861
AcvI CACGTG 1 cut(s) 497
AcyI GRCGYC 3 cut(s) 315, 432, 438
AfaI GTAC 2 cut(s) 249, 464
AfiI CCNNNNNNNGG 1 cut(s) 257
AflIII ACRYGT 1 cut(s) 277
AgsI TTSAA 1 cut(s) 448
AjiI CACGTC 1 cut(s) 576
AjnI CCWGG 2 cut(s) 804, 1055
AluBI AGCT 3 cut(s) 412, 887, 1005
AluI AGCT 3 cut(s) 412, 887, 1005
Alw26I GTCTC 2 cut(s) 331, 566
Ama87I CYCGRG 1 cut(s) 343
Aor13HI TCCGGA 1 cut(s) 405
AoxI GGCC 4 cut(s) 159, 623, 802, 1031
ApeKI GCWGC 2 cut(s) 528, 1052
ApoI RAATTY 2 cut(s) 109, 420
AspLEI GCGC 3 cut(s) 215, 494, 831
AspS9I GGNCC 1 cut(s) 190
AsuC2I CCSGG 3 cut(s) 344, 345, 426
AsuHPI GGTGA 2 cut(s) 85, 828
AvaI CYCGRG 1 cut(s) 343
AvaII GGWCC 1 cut(s) 190
BaeGI GKGCMC 1 cut(s) 570
BanII GRGCYC 1 cut(s) 226
BauI CACGAG 1 cut(s) 569
BbrPI CACGTG 1 cut(s) 497
BbsI GAAGAC 3 cut(s) 372, 436, 801
BbvI GCAGC 2 cut(s) 515, 1039
BccI CCATC 3 cut(s) 245, 733, 794
BceAI ACGGC 2 cut(s) 308, 412
BcgI CGANNNNNNTGC 2 cut(s) 220, 254
BciT130I CCWGG 2 cut(s) 806, 1057
BcnI CCSGG 3 cut(s) 344, 345, 426
BcoDI GTCTC 2 cut(s) 331, 566
BfaI CTAG 1 cut(s) 888
BfmI CTRYAG 1 cut(s) 897
BglII AGATCT 2 cut(s) 748, 890
BisI GCNGC 6 cut(s) 159, 430, 523, 526, 529, 1053
BlsI GCNGC 6 cut(s) 160, 431, 524, 527, 530, 1054
Bme1390I CCNGG 5 cut(s) 344, 345, 426, 806, 1057
Bme18I GGWCC 1 cut(s) 190
BmeT110I CYCGRG 1 cut(s) 343
BmgBI CACGTC 1 cut(s) 576
BmgT120I GGNCC 1 cut(s) 190
BmiI GGNNCC 1 cut(s) 681
BmrFI CCNGG 5 cut(s) 344, 345, 426, 806, 1057
BpiI GAAGAC 3 cut(s) 372, 436, 801
BpuMI CCSGG 3 cut(s) 344, 345, 426
BsaAI YACGTR 2 cut(s) 337, 497
BsaHI GRCGYC 3 cut(s) 315, 432, 438
BsaJI CCNNGG 4 cut(s) 226, 343, 394, 936
BsaWI WCCGGW 1 cut(s) 405
Bsc4I CCNNNNNNNGG 1 cut(s) 257
Bse118I RCCGGY 2 cut(s) 625, 962
Bse3DI GCAATG 2 cut(s) 816, 829
BseAI TCCGGA 1 cut(s) 405
BseBI CCWGG 2 cut(s) 806, 1057
BseDI CCNNGG 4 cut(s) 226, 343, 394, 936
BseGI GGATG 5 cut(s) 288, 402, 612, 744, 942
BseLI CCNNNNNNNGG 1 cut(s) 257
BseMI GCAATG 2 cut(s) 816, 829
BseMII CTCAG 1 cut(s) 975
BseRI GAGGAG 3 cut(s) 68, 126, 214
BseSI GKGCMC 1 cut(s) 570
BseXI GCAGC 2 cut(s) 515, 1039
Bsh1236I CGCG 1 cut(s) 213
BshFI GGCC 4 cut(s) 161, 625, 804, 1033
BsiHKCI CYCGRG 1 cut(s) 343
BsiSI CCGG 5 cut(s) 344, 406, 426, 626, 963
BslFI GGGAC 3 cut(s) 47, 197, 921
BslI CCNNNNNNNGG 1 cut(s) 257
BsmAI GTCTC 2 cut(s) 331, 566
BsmBI CGTCTC 2 cut(s) 331, 566
BsmFI GGGAC 3 cut(s) 47, 197, 921
BsnI GGCC 4 cut(s) 161, 625, 804, 1033
BsoBI CYCGRG 1 cut(s) 343
Bsp1286I GDGCHC 2 cut(s) 226, 570
Bsp13I TCCGGA 1 cut(s) 405
Bsp143I GATC 7 cut(s) 330, 388, 748, 890, 1023, 1077, 1092
BspANI GGCC 4 cut(s) 161, 625, 804, 1033
BspCNI CTCAG 1 cut(s) 976
BspEI TCCGGA 1 cut(s) 405
BspFNI CGCG 1 cut(s) 213
BspLI GGNNCC 1 cut(s) 681
BspMAI CTGCAG 1 cut(s) 901
BsrBI CCGCTC 1 cut(s) 522
BsrDI GCAATG 2 cut(s) 816, 829
BsrFI RCCGGY 2 cut(s) 625, 962
BssAI RCCGGY 2 cut(s) 625, 962
BssECI CCNNGG 4 cut(s) 226, 343, 394, 936
BssMI GATC 7 cut(s) 330, 388, 748, 890, 1023, 1077, 1092
BssNI GRCGYC 3 cut(s) 315, 432, 438
BssSI CACGAG 1 cut(s) 569
BssT1I CCWWGG 2 cut(s) 226, 936
Bst2BI CACGAG 1 cut(s) 569
Bst2UI CCWGG 2 cut(s) 806, 1057
Bst4CI ACNGT 4 cut(s) 71, 538, 652, 861
Bst6I CTCTTC 2 cut(s) 964, 1014
BstACI GRCGYC 3 cut(s) 315, 432, 438
BstBAI YACGTR 2 cut(s) 337, 497
BstC8I GCNNGC 4 cut(s) 301, 490, 614, 623
BstDEI CTNAG 1 cut(s) 984
BstDSI CCRYGG 1 cut(s) 394
BstF5I GGATG 5 cut(s) 288, 402, 612, 744, 942
BstFNI CGCG 1 cut(s) 213
BstHHI GCGC 3 cut(s) 215, 494, 831
BstKTI GATC 7 cut(s) 333, 391, 751, 893, 1026, 1080, 1095
BstMAI GTCTC 2 cut(s) 331, 566
BstMBI GATC 7 cut(s) 330, 388, 748, 890, 1023, 1077, 1092
BstMWI GCNNNNNNNGC 5 cut(s) 221, 528, 618, 622, 828
BstNI CCWGG 2 cut(s) 806, 1057
BstSCI CCNGG 5 cut(s) 342, 343, 424, 804, 1055
BstSFI CTRYAG 1 cut(s) 897
BstSLI GKGCMC 1 cut(s) 570
BstUI CGCG 1 cut(s) 213
BstV1I GCAGC 2 cut(s) 515, 1039
BstV2I GAAGAC 3 cut(s) 372, 436, 801
BstX2I RGATCY 2 cut(s) 748, 890
BstYI RGATCY 2 cut(s) 748, 890
BsuRI GGCC 4 cut(s) 161, 625, 804, 1033
BtgI CCRYGG 1 cut(s) 394
BtrI CACGTC 1 cut(s) 576
BtsCI GGATG 5 cut(s) 288, 402, 612, 744, 942
BtsIMutI CAGTG 1 cut(s) 857
Cac8I GCNNGC 4 cut(s) 301, 490, 614, 623
CfoI GCGC 3 cut(s) 215, 494, 831
Cfr10I RCCGGY 2 cut(s) 625, 962
Cfr13I GGNCC 1 cut(s) 190
Cfr9I CCCGGG 1 cut(s) 343
CseI GACGC 2 cut(s) 421, 494
Csp6I GTAC 2 cut(s) 248, 463
CviAII CATG 2 cut(s) 217, 1087
CviQI GTAC 2 cut(s) 248, 463
DdeI CTNAG 1 cut(s) 984
DpnI GATC 7 cut(s) 332, 390, 750, 892, 1025, 1079, 1094
DpnII GATC 7 cut(s) 330, 388, 748, 890, 1023, 1077, 1092
EaeI YGGCCR 1 cut(s) 159
Eam1104I CTCTTC 2 cut(s) 964, 1014
EarI CTCTTC 2 cut(s) 964, 1014
EciI GGCGGA 2 cut(s) 631, 739
Eco130I CCWWGG 2 cut(s) 226, 936
Eco147I AGGCCT 1 cut(s) 1033
Eco24I GRGCYC 1 cut(s) 226
Eco47I GGWCC 1 cut(s) 190
Eco57I CTGAAG 1 cut(s) 861
Eco72I CACGTG 1 cut(s) 497
Eco88I CYCGRG 1 cut(s) 343
EcoRII CCWGG 2 cut(s) 804, 1055
EcoT14I CCWWGG 2 cut(s) 226, 936
EcoT38I GRGCYC 1 cut(s) 226
ErhI CCWWGG 2 cut(s) 226, 936
Esp3I CGTCTC 2 cut(s) 331, 566
FaeI CATG 2 cut(s) 220, 1090
FaiI YATR 8 cut(s) 65, 218, 379, 866, 981, 1088, 1100, 1102
FaqI GGGAC 3 cut(s) 47, 197, 921
FatI CATG 2 cut(s) 216, 1086
FauI CCCGC 3 cut(s) 65, 308, 605
FauNDI CATATG 1 cut(s) 1100
FblI GTMKAC 2 cut(s) 435, 993
Fnu4HI GCNGC 6 cut(s) 159, 430, 523, 526, 529, 1053
FokI GGATG 5 cut(s) 275, 389, 619, 751, 929
FriOI GRGCYC 1 cut(s) 226
Fsp4HI GCNGC 6 cut(s) 159, 430, 523, 526, 529, 1053
FspBI CTAG 1 cut(s) 888
GlaI GCGC 3 cut(s) 214, 493, 830
GluI GCNGC 6 cut(s) 159, 430, 523, 526, 529, 1053
HaeIII GGCC 4 cut(s) 161, 625, 804, 1033
HapII CCGG 5 cut(s) 344, 406, 426, 626, 963
HgaI GACGC 2 cut(s) 421, 494
HhaI GCGC 3 cut(s) 215, 494, 831
Hin1I GRCGYC 3 cut(s) 315, 432, 438
Hin1II CATG 2 cut(s) 220, 1090
Hin6I GCGC 3 cut(s) 213, 492, 829
HinP1I GCGC 3 cut(s) 213, 492, 829
HincII GTYRAC 2 cut(s) 436, 994
HindII GTYRAC 2 cut(s) 436, 994
HindIII AAGCTT 1 cut(s) 1003
HinfI GANTC 2 cut(s) 972, 1010
HpaII CCGG 5 cut(s) 344, 406, 426, 626, 963
HphI GGTGA 2 cut(s) 85, 828
Hpy166II GTNNAC 4 cut(s) 340, 436, 818, 994
Hpy188I TCNGA 8 cut(s) 242, 293, 364, 388, 638, 781, 883, 1028
Hpy188III TCNNGA 5 cut(s) 328, 406, 589, 746, 752
Hpy8I GTNNAC 4 cut(s) 340, 436, 818, 994
Hpy99I CGWCG 5 cut(s) 317, 437, 440, 443, 652
HpyAV CCTTC 5 cut(s) 132, 266, 595, 700, 1023
HpyCH4III ACNGT 4 cut(s) 71, 538, 652, 861
HpyCH4IV ACGT 6 cut(s) 279, 315, 336, 438, 496, 575
HpyCH4V TGCA 1 cut(s) 899
HpyF10VI GCNNNNNNNGC 5 cut(s) 221, 528, 618, 622, 828
HpyF3I CTNAG 1 cut(s) 984
HpySE526I ACGT 6 cut(s) 279, 315, 336, 438, 496, 575
Hsp92I GRCGYC 3 cut(s) 315, 432, 438
Hsp92II CATG 2 cut(s) 220, 1090
HspAI GCGC 3 cut(s) 213, 492, 829
Kpn2I TCCGGA 1 cut(s) 405
Kzo9I GATC 7 cut(s) 330, 388, 748, 890, 1023, 1077, 1092
LmnI GCTCC 2 cut(s) 618, 679
Lsp1109I GCAGC 2 cut(s) 515, 1039
MaeI CTAG 1 cut(s) 888
MaeII ACGT 6 cut(s) 279, 315, 336, 438, 496, 575
MaeIII GTNAC 3 cut(s) 43, 86, 207
MalI GATC 7 cut(s) 332, 390, 750, 892, 1025, 1079, 1094
MbiI CCGCTC 1 cut(s) 522
MboI GATC 7 cut(s) 330, 388, 748, 890, 1023, 1077, 1092
MboII GAAGA 8 cut(s) 377, 436, 715, 806, 854, 885, 981, 1031
MflI RGATCY 2 cut(s) 748, 890
MhlI GDGCHC 2 cut(s) 226, 570
MluCI AATT 6 cut(s) 15, 26, 109, 420, 729, 916
MlyI GAGTC 2 cut(s) 981, 1019
MmeI TCCRAC 1 cut(s) 576
MroI TCCGGA 1 cut(s) 405
MseI TTAA 6 cut(s) 18, 23, 107, 516, 669, 915
MspA1I CMGCKG 1 cut(s) 736
MspI CCGG 5 cut(s) 344, 406, 426, 626, 963
MspR9I CCNGG 5 cut(s) 344, 345, 426, 806, 1057
MvaI CCWGG 2 cut(s) 806, 1057
MvnI CGCG 1 cut(s) 213
MwoI GCNNNNNNNGC 5 cut(s) 221, 528, 618, 622, 828
NciI CCSGG 3 cut(s) 344, 345, 426
NdeI CATATG 1 cut(s) 1100
NdeII GATC 7 cut(s) 330, 388, 748, 890, 1023, 1077, 1092
NlaIII CATG 2 cut(s) 220, 1090
NlaIV GGNNCC 1 cut(s) 681
NmuCI GTSAC 3 cut(s) 43, 86, 207
PceI AGGCCT 1 cut(s) 1033
PcsI WCGNNNNNNNCGW 4 cut(s) 276, 321, 360, 759
PflFI GACNNNGTC 1 cut(s) 440
PkrI GCNGC 6 cut(s) 160, 431, 524, 527, 530, 1054
PleI GAGTC 2 cut(s) 980, 1018
PmaCI CACGTG 1 cut(s) 497
PmlI CACGTG 1 cut(s) 497
PpsI GAGTC 2 cut(s) 980, 1018
Ppu21I YACGTR 2 cut(s) 337, 497
Psp6I CCWGG 2 cut(s) 804, 1055
PspCI CACGTG 1 cut(s) 497
PspGI CCWGG 2 cut(s) 804, 1055
PspN4I GGNNCC 1 cut(s) 681
PspPI GGNCC 1 cut(s) 190
PstI CTGCAG 1 cut(s) 901
PsuI RGATCY 2 cut(s) 748, 890
PsyI GACNNNGTC 1 cut(s) 440
RsaI GTAC 2 cut(s) 249, 464
RsaNI GTAC 2 cut(s) 248, 463
SalI GTCGAC 2 cut(s) 434, 992
SaqAI TTAA 6 cut(s) 18, 23, 107, 516, 669, 915
SatI GCNGC 6 cut(s) 159, 430, 523, 526, 529, 1053
Sau3AI GATC 7 cut(s) 330, 388, 748, 890, 1023, 1077, 1092
Sau96I GGNCC 1 cut(s) 190
SchI GAGTC 2 cut(s) 981, 1019
ScrFI CCNGG 5 cut(s) 344, 345, 426, 806, 1057
SduI GDGCHC 2 cut(s) 226, 570
SfcI CTRYAG 1 cut(s) 897
SgrDI CGTCGACG 1 cut(s) 434
SinI GGWCC 1 cut(s) 190
SmaI CCCGGG 1 cut(s) 345
Sse9I AATT 6 cut(s) 15, 26, 109, 420, 729, 916
SseBI AGGCCT 1 cut(s) 1033
SspMI CTAG 1 cut(s) 888
StuI AGGCCT 1 cut(s) 1033
StyD4I CCNGG 5 cut(s) 342, 343, 424, 804, 1055
StyI CCWWGG 2 cut(s) 226, 936
TaaI ACNGT 4 cut(s) 71, 538, 652, 861
TaiI ACGT 6 cut(s) 282, 318, 339, 441, 499, 578
TaqI TCGA 9 cut(s) 329, 435, 588, 745, 753, 975, 993, 1072, 1080
TasI AATT 6 cut(s) 15, 26, 109, 420, 729, 916
TauI GCSGC 4 cut(s) 161, 432, 525, 528
Tru1I TTAA 6 cut(s) 18, 23, 107, 516, 669, 915
Tru9I TTAA 6 cut(s) 18, 23, 107, 516, 669, 915
TscAI CASTG 1 cut(s) 864
TseFI GTSAC 3 cut(s) 43, 86, 207
TseI GCWGC 2 cut(s) 528, 1052
Tsp45I GTSAC 3 cut(s) 43, 86, 207
TspGWI ACGGA 3 cut(s) 486, 497, 751
TspMI CCCGGG 1 cut(s) 343
TspRI CASTG 1 cut(s) 864
Tth111I GACNNNGTC 1 cut(s) 440
VpaK11BI GGWCC 1 cut(s) 190
XapI RAATTY 2 cut(s) 109, 420
XmaI CCCGGG 1 cut(s) 343
XmiI GTMKAC 2 cut(s) 435, 993
XspI CTAG 1 cut(s) 888
ZraI GACGTC 2 cut(s) 316, 439
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.