Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0003462

Physical Location & Seq

Genomic Coordinates Reverse (-)

19627345 .. 19628272

Gene Structure 928 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 849 bp

ATGTTTCTTGAGCTCTTAACCTTCGCCTTCCTCCTCCTTCCCATCCTTTTCTTCCTCTTCAGGTTTTCATCGGACCCGAACCCCAAAACAAGCAAGCTCCCCAAATCATACCCAATAATCGGCACATTCCTATCTCTCTACAAGAACCACCGCCGCAGGCTGCCGTGGTTCACCGACCTCCTCCGCAGCTCCCCATCAAACACCTTCACTCTCCACCACTCTCTCGGCCGCCGCTTCGTCGTCACCACCAATCCCACCGTTGTCCAGCACATCCTGAAGACCAACCTCCCCAACTACCAAAAAGGCGAGAAAATCCGCACCACACTCGCCGACTCCTCGGCGACGGCATTCAACGTGGATGGAGATAACTGGAAGTTCCAGCGCCAAGTCTCCAGCCACGAATTCAACATCAAGTCTCTGCGTAAAATTTGTCGAATAGGTGGTCGACACAGAGCTCTCGGACCACTTTATTCCAATTCTCTCCGCCTCCGCCGCCAGCAGTTTAGTCCTGGACTTCCAAGACATTCTTCAGCGCTTCGGTTTCGACAACATCTGTCGAATTGCTTTCGGGTACGACCCGGATTACCTCCTACCCTCTCTGCCCGAAGCCAAATTCGCAGTGGCTTTCGACGACGCCGTGCAAATCAGCGGCGACAGGTTCAGATTGCCGCACCCAGTATGGAAACTCAAAAGGGCTCTCGGAATCGGGTCCGAAAGGCGCCTCCGTGCCGTCGTATCGGAAGTCGGCGAGTTCGCGAAAACCATTGTCAGATGAAAGAAGCGGGTTCTGAGCGAGGCGAAGGCGTTGGAATCTGTAGATCTGCCGGGACACCACGTCGGCGGCTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00073 map00073

Pfam Domains

Protein Families

p450

Protein Analysis

283

Amino Acids

32.57

Weight (kDa)

11.93

Isoelectric Point (pI)

64.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003462)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g22170
malus_domestica	MD05G1203100.v1.1 MD10G1190200.v1.1 MD10G1190400.v1.1
prunus_persica	Prupe.8G128700_v2.0.a1 Prupe.8G229200_v2.0.a1 Prupe.8G229500_v2.0.a1
pyrus_communis	pycom05g18970 pycom10g16390 pycom10g16400 pycom10g17090
rosa_chinensis	RchiOBHm_Chr6g0289001 RchiOBHm_Chr6g0289101 RchiOBHm_Chr6g0289131
rosa_laevigata	RLG00000012329 RLG00000012331
rosa_multiflora	Rmu_sc0000666.1_g000018 Rmu_sc0000666.1_g000027
rosa_roxburghii	Rroxscaffold_7G00179550 Rroxscaffold_7G00179560 Rroxscaffold_7G00179580
rosa_rugosa	Rorug06G0200600 Rorug06G0200900
rosa_samantha	Rh6AG311700 Rh6AG311800 Rh6AG312200 Rh6BG318300 Rh6BG319100 Rh6CG325200 Rh6CG325500 Rh6DG311000 Rh6DG311400
rosa_wichuraiana	Rw6G026910 Rw6G026930 Rw6G026950 Rw6G026960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	718
AccI	GTMKAC	1 cut(s)	445
AccII	CGCG	1 cut(s)	756
AcoI	YGGCCR	1 cut(s)	226
AcsI	RAATTY	3 cut(s)	401, 426, 612
AcuI	CTGAAG	3 cut(s)	43, 296, 513
AcyI	GRCGYC	2 cut(s)	634, 719
AfaI	GTAC	1 cut(s)	573
AfeI	AGCGCT	1 cut(s)	534
AfiI	CCNNNNNNNGG	1 cut(s)	119
AgsI	TTSAA	2 cut(s)	352, 406
AhdI	GACNNNNNGTC	1 cut(s)	834
AjiI	CACGTC	1 cut(s)	836
AjnI	CCWGG	1 cut(s)	508
AjuI	GAANNNNNNNTTGG	2 cut(s)	511, 543
AluBI	AGCT	4 cut(s)	13, 97, 189, 455
AluI	AGCT	4 cut(s)	13, 97, 189, 455
Alw21I	GWGCWC	2 cut(s)	15, 457
Alw26I	GTCTC	2 cut(s)	394, 420
Aor51HI	AGCGCT	1 cut(s)	534
AoxI	GGCC	1 cut(s)	226
ApeKI	GCWGC	2 cut(s)	160, 186
ApoI	RAATTY	3 cut(s)	401, 426, 612
ArsI	GACNNNNNNTTYG	2 cut(s)	427, 459
AspLEI	GCGC	3 cut(s)	384, 535, 721
AspS9I	GGNCC	3 cut(s)	73, 461, 709
AsuC2I	CCSGG	2 cut(s)	579, 826
AsuHPI	GGTGA	2 cut(s)	163, 235
AvaII	GGWCC	3 cut(s)	73, 461, 709
BanI	GGYRCC	1 cut(s)	718
BanII	GRGCYC	3 cut(s)	15, 457, 698
BbsI	GAAGAC	1 cut(s)	284
Bbv12I	GWGCWC	2 cut(s)	15, 457
BbvI	GCAGC	2 cut(s)	147, 198
BccI	CCATC	3 cut(s)	50, 202, 353
BceAI	ACGGC	4 cut(s)	148, 360, 621, 714
BcgI	CGANNNNNNTGC	2 cut(s)	307, 341
BciT130I	CCWGG	1 cut(s)	510
BcnI	CCSGG	2 cut(s)	579, 826
BcoDI	GTCTC	2 cut(s)	394, 420
BfmI	CTRYAG	1 cut(s)	814
BfoI	RGCGCY	3 cut(s)	385, 536, 722
BglII	AGATCT	1 cut(s)	818
BisI	GCNGC	9 cut(s)	154, 161, 187, 229, 232, 493, 650, 669, 842
BlsI	GCNGC	9 cut(s)	155, 162, 188, 230, 233, 494, 651, 670, 843
Bme1390I	CCNGG	3 cut(s)	510, 579, 826
Bme18I	GGWCC	3 cut(s)	73, 461, 709
BmeRI	GACNNNNNGTC	1 cut(s)	834
BmgBI	CACGTC	1 cut(s)	836
BmgT120I	GGNCC	3 cut(s)	73, 461, 709
BmiI	GGNNCC	3 cut(s)	75, 710, 720
BmrFI	CCNGG	3 cut(s)	510, 579, 826
BmrI	ACTGGG	1 cut(s)	669
BmuI	ACTGGG	1 cut(s)	669
BpiI	GAAGAC	1 cut(s)	284
BpmI	CTGGAG	1 cut(s)	376
BpuEI	CTTGAG	1 cut(s)	29
BpuMI	CCSGG	2 cut(s)	579, 826
BsaHI	GRCGYC	2 cut(s)	634, 719
BsaJI	CCNNGG	2 cut(s)	164, 336
Bsc4I	CCNNNNNNNGG	1 cut(s)	119
Bse1I	ACTGG	2 cut(s)	374, 675
BseBI	CCWGG	1 cut(s)	510
BseDI	CCNNGG	2 cut(s)	164, 336
BseGI	GGATG	3 cut(s)	42, 270, 364
BseLI	CCNNNNNNNGG	1 cut(s)	119
BseMII	CTCAG	1 cut(s)	780
BseNI	ACTGG	2 cut(s)	374, 675
BseRI	GAGGAG	3 cut(s)	23, 170, 325
BseX3I	CGGCCG	1 cut(s)	226
BseXI	GCAGC	2 cut(s)	147, 198
Bsh1236I	CGCG	1 cut(s)	756
Bsh1285I	CGRYCG	1 cut(s)	229
BshFI	GGCC	1 cut(s)	228
BshNI	GGYRCC	1 cut(s)	718
BsiEI	CGRYCG	1 cut(s)	229
BsiHKAI	GWGCWC	2 cut(s)	15, 457
BsiSI	CCGG	2 cut(s)	579, 825
BslFI	GGGAC	1 cut(s)	841
BslI	CCNNNNNNNGG	1 cut(s)	119
BsmAI	GTCTC	2 cut(s)	394, 420
BsmFI	GGGAC	1 cut(s)	841
BsmI	GAATGC	1 cut(s)	347
BsnI	GGCC	1 cut(s)	228
Bsp1286I	GDGCHC	3 cut(s)	15, 457, 698
Bsp143I	GATC	1 cut(s)	818
Bsp68I	TCGCGA	1 cut(s)	756
BspANI	GGCC	1 cut(s)	228
BspCNI	CTCAG	1 cut(s)	781
BspFNI	CGCG	1 cut(s)	756
BspLI	GGNNCC	3 cut(s)	75, 710, 720
BspT107I	GGYRCC	1 cut(s)	718
BsrI	ACTGG	2 cut(s)	374, 675
BssECI	CCNNGG	2 cut(s)	164, 336
BssMI	GATC	1 cut(s)	818
BssNI	GRCGYC	2 cut(s)	634, 719
Bst2UI	CCWGG	1 cut(s)	510
Bst4CI	ACNGT	1 cut(s)	259
Bst6I	CTCTTC	1 cut(s)	62
BstACI	GRCGYC	2 cut(s)	634, 719
BstC8I	GCNNGC	3 cut(s)	95, 158, 497
BstDEI	CTNAG	1 cut(s)	789
BstDSI	CCRYGG	1 cut(s)	164
BstF5I	GGATG	3 cut(s)	42, 270, 364
BstFNI	CGCG	1 cut(s)	756
BstH2I	RGCGCY	3 cut(s)	385, 536, 722
BstHHI	GCGC	3 cut(s)	384, 535, 721
BstKTI	GATC	1 cut(s)	821
BstMAI	GTCTC	2 cut(s)	394, 420
BstMBI	GATC	1 cut(s)	818
BstMCI	CGRYCG	1 cut(s)	229
BstMWI	GCNNNNNNNGC	2 cut(s)	492, 615
BstNI	CCWGG	1 cut(s)	510
BstSCI	CCNGG	3 cut(s)	508, 577, 824
BstSFI	CTRYAG	1 cut(s)	814
BstUI	CGCG	1 cut(s)	756
BstV1I	GCAGC	2 cut(s)	147, 198
BstV2I	GAAGAC	1 cut(s)	284
BstX2I	RGATCY	1 cut(s)	818
BstYI	RGATCY	1 cut(s)	818
BstZI	CGGCCG	1 cut(s)	226
BsuRI	GGCC	1 cut(s)	228
BtgI	CCRYGG	1 cut(s)	164
BtrI	CACGTC	1 cut(s)	836
BtsCI	GGATG	3 cut(s)	42, 270, 364
BtsI	GCAGTG	1 cut(s)	625
BtsIMutI	CAGTG	1 cut(s)	625
BtuMI	TCGCGA	1 cut(s)	756
Cac8I	GCNNGC	3 cut(s)	95, 158, 497
CfoI	GCGC	3 cut(s)	384, 535, 721
Cfr13I	GGNCC	3 cut(s)	73, 461, 709
CseI	GACGC	1 cut(s)	642
Csp6I	GTAC	1 cut(s)	572
CviQI	GTAC	1 cut(s)	572
DdeI	CTNAG	1 cut(s)	789
DinI	GGCGCC	1 cut(s)	720
DpnI	GATC	1 cut(s)	820
DpnII	GATC	1 cut(s)	818
DriI	GACNNNNNGTC	1 cut(s)	834
EaeI	YGGCCR	1 cut(s)	226
EagI	CGGCCG	1 cut(s)	226
Eam1104I	CTCTTC	1 cut(s)	62
Eam1105I	GACNNNNNGTC	1 cut(s)	834
EarI	CTCTTC	1 cut(s)	62
EciI	GGCGGA	2 cut(s)	473, 479
Ecl136II	GAGCTC	2 cut(s)	13, 455
EclXI	CGGCCG	1 cut(s)	226
Eco24I	GRGCYC	3 cut(s)	15, 457, 698
Eco47I	GGWCC	3 cut(s)	73, 461, 709
Eco47III	AGCGCT	1 cut(s)	534
Eco52I	CGGCCG	1 cut(s)	226
Eco53kI	GAGCTC	2 cut(s)	13, 455
Eco57I	CTGAAG	3 cut(s)	43, 296, 513
EcoICRI	GAGCTC	2 cut(s)	13, 455
EcoRI	GAATTC	1 cut(s)	401
EcoRII	CCWGG	1 cut(s)	508
EcoT38I	GRGCYC	3 cut(s)	15, 457, 698
EgeI	GGCGCC	1 cut(s)	720
EheI	GGCGCC	1 cut(s)	720
FaiI	YATR	2 cut(s)	109, 680
FalI	AAGNNNNNCTT	2 cut(s)	511, 543
FaqI	GGGAC	1 cut(s)	841
FauI	CCCGC	1 cut(s)	775
FblI	GTMKAC	1 cut(s)	445
Fnu4HI	GCNGC	9 cut(s)	154, 161, 187, 229, 232, 493, 650, 669, 842
FokI	GGATG	3 cut(s)	29, 257, 371
FriOI	GRGCYC	3 cut(s)	15, 457, 698
Fsp4HI	GCNGC	9 cut(s)	154, 161, 187, 229, 232, 493, 650, 669, 842
GlaI	GCGC	3 cut(s)	383, 534, 720
GluI	GCNGC	9 cut(s)	154, 161, 187, 229, 232, 493, 650, 669, 842
GsuI	CTGGAG	1 cut(s)	376
HaeII	RGCGCY	3 cut(s)	385, 536, 722
HaeIII	GGCC	1 cut(s)	228
HapII	CCGG	2 cut(s)	579, 825
HgaI	GACGC	1 cut(s)	642
HhaI	GCGC	3 cut(s)	384, 535, 721
Hin1I	GRCGYC	2 cut(s)	634, 719
Hin6I	GCGC	3 cut(s)	382, 533, 719
HinP1I	GCGC	3 cut(s)	382, 533, 719
HincII	GTYRAC	1 cut(s)	446
HindII	GTYRAC	1 cut(s)	446
HinfI	GANTC	3 cut(s)	332, 703, 810
HpaII	CCGG	2 cut(s)	579, 825
HphI	GGTGA	2 cut(s)	163, 235
Hpy166II	GTNNAC	2 cut(s)	171, 446
Hpy188I	TCNGA	8 cut(s)	73, 461, 663, 702, 713, 740, 771, 790
Hpy188III	TCNNGA	3 cut(s)	8, 274, 755
Hpy8I	GTNNAC	2 cut(s)	171, 446
Hpy99I	CGWCG	6 cut(s)	242, 346, 633, 636, 735, 840
HpyAV	CCTTC	5 cut(s)	31, 37, 47, 214, 794
HpyCH4III	ACNGT	1 cut(s)	259
HpyCH4IV	ACGT	2 cut(s)	354, 835
HpyCH4V	TGCA	1 cut(s)	641
HpyF10VI	GCNNNNNNNGC	2 cut(s)	492, 615
HpyF3I	CTNAG	1 cut(s)	789
HpySE526I	ACGT	2 cut(s)	354, 835
Hsp92I	GRCGYC	2 cut(s)	634, 719
HspAI	GCGC	3 cut(s)	382, 533, 719
KasI	GGCGCC	1 cut(s)	718
Kzo9I	GATC	1 cut(s)	818
LmnI	GCTCC	2 cut(s)	102, 194
Lsp1109I	GCAGC	2 cut(s)	147, 198
MaeII	ACGT	2 cut(s)	354, 835
MaeIII	GTNAC	1 cut(s)	241
MalI	GATC	1 cut(s)	820
MboI	GATC	1 cut(s)	818
MboII	GAAGA	4 cut(s)	43, 49, 289, 519
MflI	RGATCY	1 cut(s)	818
MhlI	GDGCHC	3 cut(s)	15, 457, 698
MluCI	AATT	5 cut(s)	401, 426, 475, 559, 612
Mly113I	GGCGCC	1 cut(s)	719
MlyI	GAGTC	1 cut(s)	326
MmeI	TCCRAC	1 cut(s)	787
MseI	TTAA	1 cut(s)	17
MspA1I	CMGCKG	1 cut(s)	649
MspI	CCGG	2 cut(s)	579, 825
MspR9I	CCNGG	3 cut(s)	510, 579, 826
Mva1269I	GAATGC	1 cut(s)	347
MvaI	CCWGG	1 cut(s)	510
MvnI	CGCG	1 cut(s)	756
MwoI	GCNNNNNNNGC	2 cut(s)	492, 615
NarI	GGCGCC	1 cut(s)	719
NciI	CCSGG	2 cut(s)	579, 826
NdeII	GATC	1 cut(s)	818
NlaIV	GGNNCC	3 cut(s)	75, 710, 720
NmeAIII	GCCGAG	2 cut(s)	204, 317
NmuCI	GTSAC	1 cut(s)	241
NruI	TCGCGA	1 cut(s)	756
PcsI	WCGNNNNNNNCGW	1 cut(s)	634
PctI	GAATGC	1 cut(s)	347
PfeI	GAWTC	2 cut(s)	703, 810
PfoI	TCCNGGA	1 cut(s)	508
PkrI	GCNGC	9 cut(s)	155, 162, 188, 230, 233, 494, 651, 670, 843
PleI	GAGTC	1 cut(s)	326
PluTI	GGCGCC	1 cut(s)	722
PpsI	GAGTC	1 cut(s)	326
Psp124BI	GAGCTC	2 cut(s)	15, 457
Psp6I	CCWGG	1 cut(s)	508
PspGI	CCWGG	1 cut(s)	508
PspN4I	GGNNCC	3 cut(s)	75, 710, 720
PspPI	GGNCC	3 cut(s)	73, 461, 709
PsuI	RGATCY	1 cut(s)	818
RruI	TCGCGA	1 cut(s)	756
RsaI	GTAC	1 cut(s)	573
RsaNI	GTAC	1 cut(s)	572
SacI	GAGCTC	2 cut(s)	15, 457
SalI	GTCGAC	1 cut(s)	444
SaqAI	TTAA	1 cut(s)	17
SatI	GCNGC	9 cut(s)	154, 161, 187, 229, 232, 493, 650, 669, 842
Sau3AI	GATC	1 cut(s)	818
Sau96I	GGNCC	3 cut(s)	73, 461, 709
SchI	GAGTC	1 cut(s)	326
ScrFI	CCNGG	3 cut(s)	510, 579, 826
SduI	GDGCHC	3 cut(s)	15, 457, 698
SfcI	CTRYAG	1 cut(s)	814
SfoI	GGCGCC	1 cut(s)	720
SinI	GGWCC	3 cut(s)	73, 461, 709
SmlI	CTYRAG	1 cut(s)	8
SmoI	CTYRAG	1 cut(s)	8
Sse9I	AATT	5 cut(s)	401, 426, 475, 559, 612
SspDI	GGCGCC	1 cut(s)	718
SstI	GAGCTC	2 cut(s)	15, 457
StyD4I	CCNGG	3 cut(s)	508, 577, 824
TaaI	ACNGT	1 cut(s)	259
TaiI	ACGT	2 cut(s)	357, 838
TaqI	TCGA	5 cut(s)	433, 445, 544, 557, 628
TasI	AATT	5 cut(s)	401, 426, 475, 559, 612
TauI	GCSGC	7 cut(s)	156, 231, 234, 495, 652, 671, 844
TfiI	GAWTC	2 cut(s)	703, 810
Tru1I	TTAA	1 cut(s)	17
Tru9I	TTAA	1 cut(s)	17
TscAI	CASTG	1 cut(s)	625
TseFI	GTSAC	1 cut(s)	241
TseI	GCWGC	2 cut(s)	160, 186
Tsp45I	GTSAC	1 cut(s)	241
TspDTI	ATGAA	2 cut(s)	57, 788
TspGWI	ACGGA	1 cut(s)	714
TspRI	CASTG	1 cut(s)	625
VpaK11BI	GGWCC	3 cut(s)	73, 461, 709
XapI	RAATTY	3 cut(s)	401, 426, 612
XcmI	CCANNNNNNNNNTGG	1 cut(s)	617
XmiI	GTMKAC	1 cut(s)	445

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.