Rh6AG311800

Cytochrome p450

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0003462
Physical Location & Seq
Reverse (-)
51122284 .. 51123684
1401 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG311800.1

Sequence Viewer

Length: 1293 bp
ATGCACCATTCTCTGGGCCACCACTTCGTCGTCACCGCCAACCCAGCCGTGGTCCAGCACATCCTCAAGACAAAGTTCCACATCTACCAAAAGGGCGAGTCCTTCCGTACAACTCTCCACGACCTCCTGGGCGGTGGGATTTTCAACGCTGACGGTGACAATTGGAAGTTCCAGCGGCAACTCTCCAGCCATGAATTCAACACAAAGTCCCTCAGGAAATTTGTAGAAGACGTGGTGGACACTGAGCTCTACGATCGGCTGATCCCCATTCTATCCAAATCTTCCGGCGACCGAACCGTTCTCGATTTCCAAGACATTCTCCAGCGGTTCGCCTTCGACAACATTTGCCGGATCGGGTTCGGTTACGACCCAGAGTATCTCCTTCCTTCTCTGCCGCAAGCTAAATTCGCGGTGGCGTATGATGATGCCGTCCAGATCAGCGGCGAAAGGTTCAGTTCCATGCCTCCAGTGTGGAAGATCAAACGAGCTCTCGAAATCGGATCGGAAAGGCATCTCCGTCGTGTGGTCACCGACGTCCGAGAGTTTGCGAACACTATCGTCAAGCAAAAGAAGCGTGAAATGGACGAGAAGAAGACTCTGGAGTCTCACGATCTACTGTCTAGATTCTTGAGCTCCGGCCACTCCGATGAGAAATTCGTCACTGACATAGTCATCAGCTTCATCCTCGCTGGAAGGGACACAACCTCGGCTGCTTTGACCTGGTTCTTTTGGCTAATCTCAAAACATCCAAACGTCGAAAGCCAAATTCTCAAGGAGATCAATGAGAAAATGGAGACCGGAGTCGGATATGATGAAGCGAAGGAGATGGTGTACACACACGCGGCACTTTGTGAGAGCATGAGGCTGTACCCGCCTGTTCCGACGGACAACAAAGAGGCGGTAGAAGATGACGTTTTGCCGGACGGGACTAAAGTGAAGAAGGGGACGAAAGTGACGTACCACGTGTACGCAATGGGGCGGATGGAGCAGATATGGGGCAAGGATTGGGCCGAGTTCCGCCCCGAGAGGTGGTTGGAGCGTGACGTGGCGACGGAGAAGTGGAGGTTCGTGGCGAAGGACTCCTTTAGCTACCCAGTGTTTCAGGCGGGGCCGAGGATCTGTTTGGGGAAGGAGATGGCCTTTTTGCAGATGAAAAGGGTGGTGGGTGAGGTTTTGAAGATGTTTAAAGTTGTGCCGGAGAAGAGGGAGAATGGAAAGGAGCCGGAGTTTCTTGCCTACCTCACCGGAAAAATGAAAGGTGGGTTTCCAGTGACCGTTGTTGTGAGAGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00073 map00073
Pfam Domains
Protein Families
p450

Protein Analysis

430

Amino Acids

49.53

Weight (kDa)

7.74

Isoelectric Point (pI)

41.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 5 - 404 3.1e-64 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 601
AatII GACGTC 1 cut(s) 537
AccB7I CCANNNNNTGG 1 cut(s) 13
AccII CGCG 2 cut(s) 410, 842
AclWI GGATC 4 cut(s) 256, 359, 508, 1124
AcoI YGGCCR 1 cut(s) 637
AcsI RAATTY 5 cut(s) 194, 218, 404, 653, 765
AcvI CACGTG 1 cut(s) 964
AcyI GRCGYC 1 cut(s) 534
AdeI CACNNNGTG 1 cut(s) 851
AfaI GTAC 5 cut(s) 109, 833, 869, 959, 968
AfiI CCNNNNNNNGG 4 cut(s) 13, 49, 523, 1029
AflIII ACRYGT 1 cut(s) 963
AgsI TTSAA 3 cut(s) 145, 199, 1177
AjiI CACGTC 2 cut(s) 232, 1045
AjnI CCWGG 2 cut(s) 126, 719
AluBI AGCT 6 cut(s) 247, 401, 488, 633, 678, 1089
AluI AGCT 6 cut(s) 247, 401, 488, 633, 678, 1089
Alw21I GWGCWC 3 cut(s) 249, 490, 635
Alw26I GTCTC 2 cut(s) 609, 788
AlwI GGATC 4 cut(s) 256, 359, 508, 1124
Ama87I CYCGRG 1 cut(s) 1022
AoxI GGCC 5 cut(s) 16, 637, 1008, 1109, 1137
ApeKI GCWGC 1 cut(s) 710
ApoI RAATTY 5 cut(s) 194, 218, 404, 653, 765
AspS9I GGNCC 4 cut(s) 16, 52, 1008, 1109
AsuHPI GGTGA 5 cut(s) 25, 167, 520, 1178, 1234
AvaI CYCGRG 1 cut(s) 1022
AvaII GGWCC 1 cut(s) 52
AxyI CCTNAGG 1 cut(s) 212
BanII GRGCYC 3 cut(s) 249, 490, 635
BbrPI CACGTG 1 cut(s) 964
BbsI GAAGAC 2 cut(s) 234, 599
Bbv12I GWGCWC 3 cut(s) 249, 490, 635
BbvI GCAGC 1 cut(s) 697
BccI CCATC 3 cut(s) 820, 976, 1129
BceAI ACGGC 2 cut(s) 32, 413
BcgI CGANNNNNNTGC 2 cut(s) 500, 534
BciT130I CCWGG 2 cut(s) 128, 721
BcoDI GTCTC 2 cut(s) 609, 788
BfaI CTAG 1 cut(s) 621
BisI GCNGC 5 cut(s) 176, 395, 442, 711, 843
BlsI GCNGC 5 cut(s) 177, 396, 443, 712, 844
Bme1390I CCNGG 2 cut(s) 128, 721
Bme18I GGWCC 1 cut(s) 52
BmeT110I CYCGRG 1 cut(s) 1022
BmgBI CACGTC 2 cut(s) 232, 1045
BmgT120I GGNCC 4 cut(s) 16, 52, 1008, 1109
BmiI GGNNCC 2 cut(s) 1110, 1221
BmrFI CCNGG 2 cut(s) 128, 721
BmrI ACTGGG 1 cut(s) 1088
BmsI GCATC 2 cut(s) 415, 520
BmuI ACTGGG 1 cut(s) 1088
BoxI GACNNNNGTC 1 cut(s) 800
BpiI GAAGAC 2 cut(s) 234, 599
BpmI CTGGAG 4 cut(s) 169, 305, 450, 620
BpuEI CTTGAG 3 cut(s) 50, 649, 755
BsaAI YACGTR 1 cut(s) 964
BsaHI GRCGYC 1 cut(s) 534
BsaI GGTCTC 1 cut(s) 788
BsaJI CCNNGG 4 cut(s) 48, 127, 705, 1112
BsaWI WCCGGW 2 cut(s) 797, 1244
BsaXI ACNNNNNCTCC 4 cut(s) 815, 845, 1211, 1241
Bsc4I CCNNNNNNNGG 4 cut(s) 13, 49, 523, 1029
Bse1I ACTGG 3 cut(s) 467, 1094, 1268
Bse21I CCTNAGG 1 cut(s) 212
Bse3DI GCAATG 1 cut(s) 978
BseBI CCWGG 2 cut(s) 128, 721
BseDI CCNNGG 4 cut(s) 48, 127, 705, 1112
BseGI GGATG 4 cut(s) 60, 681, 745, 987
BseLI CCNNNNNNNGG 4 cut(s) 13, 49, 523, 1029
BseMI GCAATG 1 cut(s) 978
BseMII CTCAG 2 cut(s) 226, 234
BseNI ACTGG 3 cut(s) 467, 1094, 1268
BseXI GCAGC 1 cut(s) 697
BseYI CCCAGC 1 cut(s) 43
Bsh1236I CGCG 2 cut(s) 410, 842
Bsh1285I CGRYCG 2 cut(s) 256, 292
BshFI GGCC 5 cut(s) 18, 639, 1010, 1111, 1139
BsiEI CGRYCG 2 cut(s) 256, 292
BsiHKAI GWGCWC 3 cut(s) 249, 490, 635
BsiHKCI CYCGRG 1 cut(s) 1022
BsiSI CCGG 8 cut(s) 285, 349, 636, 798, 920, 1196, 1223, 1245
BslFI GGGAC 4 cut(s) 193, 710, 940, 958
BslI CCNNNNNNNGG 4 cut(s) 13, 49, 523, 1029
BsmAI GTCTC 2 cut(s) 609, 788
BsmFI GGGAC 4 cut(s) 193, 710, 940, 958
BsnI GGCC 5 cut(s) 18, 639, 1010, 1111, 1139
Bso31I GGTCTC 1 cut(s) 788
BsoBI CYCGRG 1 cut(s) 1022
Bsp1286I GDGCHC 3 cut(s) 249, 490, 635
Bsp1407I TGTACA 1 cut(s) 831
Bsp143I GATC 9 cut(s) 253, 261, 351, 435, 477, 500, 610, 777, 1116
BspANI GGCC 5 cut(s) 18, 639, 1010, 1111, 1139
BspCNI CTCAG 2 cut(s) 225, 235
BspFNI CGCG 2 cut(s) 410, 842
BspLI GGNNCC 2 cut(s) 1110, 1221
BspPI GGATC 4 cut(s) 256, 359, 508, 1124
BspTNI GGTCTC 1 cut(s) 788
BsrDI GCAATG 1 cut(s) 978
BsrGI TGTACA 1 cut(s) 831
BsrI ACTGG 3 cut(s) 467, 1094, 1268
BssECI CCNNGG 4 cut(s) 48, 127, 705, 1112
BssMI GATC 9 cut(s) 253, 261, 351, 435, 477, 500, 610, 777, 1116
BssNI GRCGYC 1 cut(s) 534
Bst2UI CCWGG 2 cut(s) 128, 721
Bst4CI ACNGT 4 cut(s) 155, 298, 618, 1276
Bst6I CTCTTC 1 cut(s) 1196
BstACI GRCGYC 1 cut(s) 534
BstAUI TGTACA 1 cut(s) 831
BstBAI YACGTR 1 cut(s) 964
BstC8I GCNNGC 1 cut(s) 399
BstDEI CTNAG 2 cut(s) 212, 243
BstDSI CCRYGG 1 cut(s) 48
BstEII GGTNACC 1 cut(s) 526
BstF5I GGATG 4 cut(s) 60, 681, 745, 987
BstFNI CGCG 2 cut(s) 410, 842
BstKTI GATC 9 cut(s) 256, 264, 354, 438, 480, 503, 613, 780, 1119
BstMAI GTCTC 2 cut(s) 609, 788
BstMBI GATC 9 cut(s) 253, 261, 351, 435, 477, 500, 610, 777, 1116
BstMCI CGRYCG 2 cut(s) 256, 292
BstMWI GCNNNNNNNGC 5 cut(s) 44, 407, 571, 871, 985
BstNI CCWGG 2 cut(s) 128, 721
BstPAI GACNNNNGTC 1 cut(s) 800
BstPI GGTNACC 1 cut(s) 526
BstSCI CCNGG 2 cut(s) 126, 719
BstUI CGCG 2 cut(s) 410, 842
BstV1I GCAGC 1 cut(s) 697
BstV2I GAAGAC 2 cut(s) 234, 599
BstX2I RGATCY 1 cut(s) 1116
BstYI RGATCY 1 cut(s) 1116
Bsu36I CCTNAGG 1 cut(s) 212
BsuRI GGCC 5 cut(s) 18, 639, 1010, 1111, 1139
BtgI CCRYGG 1 cut(s) 48
BtrI CACGTC 2 cut(s) 232, 1045
BtsCI GGATG 4 cut(s) 60, 681, 745, 987
BtsIMutI CAGTG 5 cut(s) 240, 474, 660, 1101, 1275
Cac8I GCNNGC 1 cut(s) 399
Cfr13I GGNCC 4 cut(s) 16, 52, 1008, 1109
CsiI ACCWGGT 1 cut(s) 719
Csp6I GTAC 5 cut(s) 108, 832, 868, 958, 967
CviAII CATG 3 cut(s) 191, 460, 859
CviQI GTAC 5 cut(s) 108, 832, 868, 958, 967
DdeI CTNAG 2 cut(s) 212, 243
DpnI GATC 9 cut(s) 255, 263, 353, 437, 479, 502, 612, 779, 1118
DpnII GATC 9 cut(s) 253, 261, 351, 435, 477, 500, 610, 777, 1116
DraI TTTAAA 1 cut(s) 1186
DraIII CACNNNGTG 1 cut(s) 851
DrdI GACNNNNNNGTC 1 cut(s) 601
DseDI GACNNNNNNGTC 1 cut(s) 601
EaeI YGGCCR 1 cut(s) 637
Eam1104I CTCTTC 1 cut(s) 1196
EarI CTCTTC 1 cut(s) 1196
EciI GGCGGA 2 cut(s) 994, 1007
Ecl136II GAGCTC 3 cut(s) 247, 488, 633
Eco24I GRGCYC 3 cut(s) 249, 490, 635
Eco31I GGTCTC 1 cut(s) 788
Eco47I GGWCC 1 cut(s) 52
Eco53kI GAGCTC 3 cut(s) 247, 488, 633
Eco72I CACGTG 1 cut(s) 964
Eco81I CCTNAGG 1 cut(s) 212
Eco88I CYCGRG 1 cut(s) 1022
Eco91I GGTNACC 1 cut(s) 526
EcoICRI GAGCTC 3 cut(s) 247, 488, 633
EcoO65I GGTNACC 1 cut(s) 526
EcoRI GAATTC 1 cut(s) 194
EcoRII CCWGG 2 cut(s) 126, 719
EcoT38I GRGCYC 3 cut(s) 249, 490, 635
FaeI CATG 3 cut(s) 194, 463, 862
FaiI YATR 7 cut(s) 192, 420, 461, 668, 810, 860, 994
FalI AAGNNNNNCTT 2 cut(s) 1067, 1099
FaqI GGGAC 4 cut(s) 193, 710, 940, 958
FatI CATG 3 cut(s) 190, 459, 858
FauI CCCGC 2 cut(s) 879, 1099
Fnu4HI GCNGC 5 cut(s) 176, 395, 442, 711, 843
FokI GGATG 4 cut(s) 47, 668, 732, 994
FriOI GRGCYC 3 cut(s) 249, 490, 635
Fsp4HI GCNGC 5 cut(s) 176, 395, 442, 711, 843
FspBI CTAG 1 cut(s) 621
GluI GCNGC 5 cut(s) 176, 395, 442, 711, 843
GsaI CCCAGC 1 cut(s) 47
GsuI CTGGAG 4 cut(s) 169, 305, 450, 620
HaeIII GGCC 5 cut(s) 18, 639, 1010, 1111, 1139
HapII CCGG 8 cut(s) 285, 349, 636, 798, 920, 1196, 1223, 1245
Hin1I GRCGYC 1 cut(s) 534
Hin1II CATG 3 cut(s) 194, 463, 862
HinfI GANTC 6 cut(s) 98, 595, 602, 624, 801, 1079
HpaII CCGG 8 cut(s) 285, 349, 636, 798, 920, 1196, 1223, 1245
HphI GGTGA 5 cut(s) 25, 167, 520, 1178, 1234
Hpy166II GTNNAC 4 cut(s) 238, 832, 834, 967
Hpy188I TCNGA 6 cut(s) 500, 505, 539, 646, 806, 882
Hpy188III TCNNGA 9 cut(s) 67, 214, 302, 433, 491, 599, 608, 621, 628
Hpy8I GTNNAC 4 cut(s) 238, 832, 834, 967
Hpy99I CGWCG 6 cut(s) 32, 522, 536, 758, 886, 1054
HpyAV CCTTC 9 cut(s) 112, 343, 392, 396, 687, 814, 934, 1069, 1123
HpyCH4III ACNGT 4 cut(s) 155, 298, 618, 1276
HpyCH4IV ACGT 7 cut(s) 231, 534, 753, 912, 956, 963, 1044
HpyCH4V TGCA 2 cut(s) 4, 1147
HpyF10VI GCNNNNNNNGC 5 cut(s) 44, 407, 571, 871, 985
HpyF3I CTNAG 2 cut(s) 212, 243
HpySE526I ACGT 7 cut(s) 231, 534, 753, 912, 956, 963, 1044
Hsp92I GRCGYC 1 cut(s) 534
Hsp92II CATG 3 cut(s) 194, 463, 862
Kzo9I GATC 9 cut(s) 253, 261, 351, 435, 477, 500, 610, 777, 1116
LmnI GCTCC 4 cut(s) 638, 985, 1036, 1219
Lsp1109I GCAGC 1 cut(s) 697
LweI GCATC 2 cut(s) 415, 520
MabI ACCWGGT 1 cut(s) 719
MaeI CTAG 1 cut(s) 621
MaeII ACGT 7 cut(s) 231, 534, 753, 912, 956, 963, 1044
MaeIII GTNAC 8 cut(s) 31, 155, 362, 526, 658, 952, 1040, 1270
MalI GATC 9 cut(s) 255, 263, 353, 437, 479, 502, 612, 779, 1118
MboI GATC 9 cut(s) 253, 261, 351, 435, 477, 500, 610, 777, 1116
MboII GAAGA 9 cut(s) 239, 273, 487, 601, 604, 917, 949, 1189, 1213
MfeI CAATTG 1 cut(s) 160
MflI RGATCY 1 cut(s) 1116
MhlI GDGCHC 3 cut(s) 249, 490, 635
MluCI AATT 6 cut(s) 160, 194, 218, 404, 653, 765
MlyI GAGTC 5 cut(s) 107, 589, 611, 810, 1073
MmeI TCCRAC 3 cut(s) 784, 905, 1014
MseI TTAA 1 cut(s) 1185
MslI CAYNNNNRTG 1 cut(s) 645
MspA1I CMGCKG 3 cut(s) 175, 325, 441
MspI CCGG 8 cut(s) 285, 349, 636, 798, 920, 1196, 1223, 1245
MspR9I CCNGG 2 cut(s) 128, 721
MunI CAATTG 1 cut(s) 160
MvaI CCWGG 2 cut(s) 128, 721
MvnI CGCG 2 cut(s) 410, 842
MwoI GCNNNNNNNGC 5 cut(s) 44, 407, 571, 871, 985
NdeII GATC 9 cut(s) 253, 261, 351, 435, 477, 500, 610, 777, 1116
NlaIII CATG 3 cut(s) 194, 463, 862
NlaIV GGNNCC 2 cut(s) 1110, 1221
NmeAIII GCCGAG 3 cut(s) 686, 1036, 1137
NmuCI GTSAC 7 cut(s) 31, 155, 526, 658, 952, 1040, 1270
PcsI WCGNNNNNNNCGW 1 cut(s) 953
PfeI GAWTC 1 cut(s) 624
PflFI GACNNNGTC 1 cut(s) 668
PflMI CCANNNNNTGG 1 cut(s) 13
PkrI GCNGC 5 cut(s) 177, 396, 443, 712, 844
Ple19I CGATCG 1 cut(s) 256
PleI GAGTC 5 cut(s) 106, 589, 610, 809, 1073
PmaCI CACGTG 1 cut(s) 964
PmlI CACGTG 1 cut(s) 964
PpsI GAGTC 5 cut(s) 106, 589, 610, 809, 1073
Ppu21I YACGTR 1 cut(s) 964
PshAI GACNNNNGTC 1 cut(s) 800
Psp124BI GAGCTC 3 cut(s) 249, 490, 635
Psp6I CCWGG 2 cut(s) 126, 719
PspCI CACGTG 1 cut(s) 964
PspEI GGTNACC 1 cut(s) 526
PspFI CCCAGC 1 cut(s) 43
PspGI CCWGG 2 cut(s) 126, 719
PspN4I GGNNCC 2 cut(s) 1110, 1221
PspPI GGNCC 4 cut(s) 16, 52, 1008, 1109
PsuI RGATCY 1 cut(s) 1116
PsyI GACNNNGTC 1 cut(s) 668
PvuI CGATCG 1 cut(s) 256
RsaI GTAC 5 cut(s) 109, 833, 869, 959, 968
RsaNI GTAC 5 cut(s) 108, 832, 868, 958, 967
RseI CAYNNNNRTG 1 cut(s) 645
SacI GAGCTC 3 cut(s) 249, 490, 635
SaqAI TTAA 1 cut(s) 1185
SatI GCNGC 5 cut(s) 176, 395, 442, 711, 843
Sau3AI GATC 9 cut(s) 253, 261, 351, 435, 477, 500, 610, 777, 1116
Sau96I GGNCC 4 cut(s) 16, 52, 1008, 1109
SchI GAGTC 5 cut(s) 107, 589, 611, 810, 1073
ScrFI CCNGG 2 cut(s) 128, 721
SduI GDGCHC 3 cut(s) 249, 490, 635
SexAI ACCWGGT 1 cut(s) 719
SfaNI GCATC 2 cut(s) 415, 520
SinI GGWCC 1 cut(s) 52
SmiMI CAYNNNNRTG 1 cut(s) 645
SmlI CTYRAG 3 cut(s) 65, 628, 770
SmoI CTYRAG 3 cut(s) 65, 628, 770
Sse9I AATT 6 cut(s) 160, 194, 218, 404, 653, 765
SspMI CTAG 1 cut(s) 621
SstI GAGCTC 3 cut(s) 249, 490, 635
StyD4I CCNGG 2 cut(s) 126, 719
TaaI ACNGT 4 cut(s) 155, 298, 618, 1276
TaiI ACGT 7 cut(s) 234, 537, 756, 915, 959, 966, 1047
TaqI TCGA 4 cut(s) 303, 336, 492, 756
TaqII GACCGA 1 cut(s) 306
TasI AATT 6 cut(s) 160, 194, 218, 404, 653, 765
TatI WGTACW 1 cut(s) 831
TauI GCSGC 4 cut(s) 178, 397, 444, 845
TfiI GAWTC 1 cut(s) 624
Tru1I TTAA 1 cut(s) 1185
Tru9I TTAA 1 cut(s) 1185
TscAI CASTG 5 cut(s) 247, 474, 667, 1101, 1275
TseFI GTSAC 7 cut(s) 31, 155, 526, 658, 952, 1040, 1270
TseI GCWGC 1 cut(s) 710
Tsp45I GTSAC 7 cut(s) 31, 155, 526, 658, 952, 1040, 1270
TspDTI ATGAA 5 cut(s) 207, 670, 828, 1166, 1268
TspGWI ACGGA 4 cut(s) 95, 506, 899, 1067
TspRI CASTG 5 cut(s) 247, 474, 667, 1101, 1275
Tth111I GACNNNGTC 1 cut(s) 668
Van91I CCANNNNNTGG 1 cut(s) 13
VpaK11BI GGWCC 1 cut(s) 52
XapI RAATTY 5 cut(s) 194, 218, 404, 653, 765
XbaI TCTAGA 1 cut(s) 620
XcmI CCANNNNNNNNNTGG 1 cut(s) 46
XspI CTAG 1 cut(s) 621
ZraI GACGTC 1 cut(s) 535
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.