Rh6AG312200

Cytochrome p450

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
Physical Location & Seq
Reverse (-)
51147870 .. 51149372
1503 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG312200.1

Sequence Viewer

Length: 1368 bp
ATGTTTCTCGAGCTACTAGCCTTAGCCCTTTTCTTGCTCCCCTTGCTTTTCCTCATTCTCAAGTTTTCCGGCAACCCGGAAACCGGTAACAGCAAGCTCCCAAAATCATACCCAATAATCGGTTCATTCCCAGCCCTCTACAAGAACCATGCCAACAGACTCGCATGGTTCACTGAGCTTCTTCAGAACTCTCCCTCGGCCACTATCTCTATTCACCACTCTTTCGGCCAACACTCCGTCGTCACCGCCAACCCCACTGTGGTTCAACACATCCTCAAGACAAACTTCCCCACCTACCAAAAAGGCGAGTCATCCCGTCAAATTCTCCAGGAGCTCCTCGGCGACGGCATTTTCAACGCAGACGGAGACAACTGGAAGTTCCAGAGGCAACTCTCCAGCCACGAATTCAACACCAAGTCGCTGAGAAAATTCGTTGAAGACGTGGTTGACATTGAACTCTACGACAGGCTCGTACCCATTCTATCCAAATCTTCTAGCGAGCGAACCATTCTTGATTTCCAAGACATTCTCCAAAGGTTTGCCTTCGACAACATTTGCCGAATCGGGTTTGGCTACGACCCTAACCGTATCAGCAGAGTGGTCTCCGATGTGCGTGAGTTCGCCAACACCATTGTCAAGCAAAAGAAGAGAGAGATGGACGAGATGAAGACCCTGGAGTCGCACGATCTGCTGTCTCGATTCTTGGGCTCCGGCCACTCCGACGAGAAGTTCGTCACCGACATCGTCATCAGCTTCACCCTCGCCGGAAGAGACACGACCTCAGCTGCTCTGACCTGGTTCTTCTGGCTAATCTCAAACCACCCAAACGTCGAGAGCGAAATTCTCAAGGAGATAGAAGAGAAATCGGAGAAGGGAGCCGGATATGATGAAGCGAAGGAGATGGTGTACATACACGCGGCGCTCTGCGAGAGCATGAGGCTGTACCCGCCGGTTCCGATCGACGGCAAAGAGGCGGTGAACGACGACGTTTTGCCTGACGGGACTAAAGTGAAGAAGGGGATGGCAGTGTCGTACCATGTTTACGCGATGGGGAGGATGGAGCAGATATGGGGCAAGGACTGGGCAGAGTTCCGACCCGAGAGGTGGTTGGAGCGTGACGTGGCGGCGGAAAAGTGGAGGTTCGTGGCGAAGGACTCGTTTAGCTACCCCGTATTTCAGGCGGGGCCGAGGATCTGTTTGGGGAAGGAGATGGCGTTCTTGCAGATGAAGAGGGTAGTTGTTGGGGTTTTGAAGAGGTTTAAGGTGGTGCCGGAGAAGAGAGAGAATGGATTAGAGCCGGAGTTTGTTGCTTACCTTACAGGGAAAATGAAGGGTGGGTTTCCGGTCACCGTTGTGGAGAGGGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

455

Amino Acids

51.96

Weight (kDa)

6.85

Isoelectric Point (pI)

40.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 33 - 191 9.7e-12 Cytochrome P450
p450 PF00067 197 - 427 1.2e-42 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 676
AccB1I GGYRCC 1 cut(s) 1267
AccII CGCG 2 cut(s) 917, 1046
AciI CCGC 7 cut(s) 246, 917, 947, 974, 1124, 1127, 1181
AclWI GGATC 1 cut(s) 1199
AcoI YGGCCR 3 cut(s) 198, 226, 712
AcsI RAATTY 4 cut(s) 321, 404, 428, 840
AcuI CTGAAG 1 cut(s) 167
AfaI GTAC 4 cut(s) 474, 908, 944, 1034
AfiI CCNNNNNNNGG 5 cut(s) 83, 119, 259, 962, 1104
AgeI ACCGGT 1 cut(s) 83
AgsI TTSAA 6 cut(s) 266, 355, 409, 437, 455, 1252
AjiI CACGTC 2 cut(s) 442, 1120
AjnI CCWGG 3 cut(s) 327, 672, 794
AjuI GAANNNNNNNTTGG 2 cut(s) 106, 138
AleI CACNNNNGTG 1 cut(s) 1352
AloI GAACNNNNNNTCC 2 cut(s) 1199, 1231
AluBI AGCT 7 cut(s) 13, 97, 178, 334, 753, 785, 1164
AluI AGCT 7 cut(s) 13, 97, 178, 334, 753, 785, 1164
Alw21I GWGCWC 1 cut(s) 336
Alw26I GTCTC 4 cut(s) 360, 607, 699, 765
AlwI GGATC 1 cut(s) 1199
Ama87I CYCGRG 2 cut(s) 8, 1097
AoxI GGCC 4 cut(s) 198, 226, 712, 1184
ApeKI GCWGC 1 cut(s) 785
ApoI RAATTY 4 cut(s) 321, 404, 428, 840
ArsI GACNNNNNNTTYG 2 cut(s) 713, 745
AsiGI ACCGGT 1 cut(s) 83
AspLEI GCGC 1 cut(s) 922
AspS9I GGNCC 1 cut(s) 1184
AsuC2I CCSGG 1 cut(s) 77
AsuHPI GGTGA 6 cut(s) 206, 235, 727, 748, 988, 1339
AvaI CYCGRG 2 cut(s) 8, 1097
BanI GGYRCC 1 cut(s) 1267
BanII GRGCYC 2 cut(s) 336, 710
BbsI GAAGAC 2 cut(s) 444, 674
Bbv12I GWGCWC 1 cut(s) 336
BbvCI CCTCAGC 1 cut(s) 781
BbvI GCAGC 1 cut(s) 772
BccI CCATC 6 cut(s) 649, 895, 1015, 1042, 1051, 1204
BceAI ACGGC 2 cut(s) 361, 979
BciT130I CCWGG 3 cut(s) 329, 674, 796
BcnI CCSGG 1 cut(s) 77
BcoDI GTCTC 4 cut(s) 360, 607, 699, 765
BfaI CTAG 2 cut(s) 17, 495
BfoI RGCGCY 1 cut(s) 923
BisI GCNGC 3 cut(s) 786, 918, 1125
BlsI GCNGC 3 cut(s) 787, 919, 1126
Bme1390I CCNGG 4 cut(s) 77, 329, 674, 796
BmeT110I CYCGRG 2 cut(s) 8, 1097
BmgBI CACGTC 2 cut(s) 442, 1120
BmgT120I GGNCC 1 cut(s) 1184
BmiI GGNNCC 5 cut(s) 709, 877, 954, 1185, 1269
BmrFI CCNGG 4 cut(s) 77, 329, 674, 796
BmrI ACTGGG 1 cut(s) 1090
BmuI ACTGGG 1 cut(s) 1090
BpiI GAAGAC 2 cut(s) 444, 674
BpmI CTGGAG 3 cut(s) 311, 379, 695
Bpu10I CCTNAGC 2 cut(s) 22, 781
BpuEI CTTGAG 3 cut(s) 44, 260, 830
BpuMI CCSGG 1 cut(s) 77
BsaI GGTCTC 1 cut(s) 607
BsaJI CCNNGG 4 cut(s) 195, 337, 672, 1187
BsaWI WCCGGW 2 cut(s) 83, 1342
BsaXI ACNNNNNCTCC 4 cut(s) 890, 920, 1199, 1229
Bsc4I CCNNNNNNNGG 5 cut(s) 83, 119, 259, 962, 1104
Bse118I RCCGGY 2 cut(s) 83, 949
Bse1I ACTGG 2 cut(s) 377, 1085
BseBI CCWGG 3 cut(s) 329, 674, 796
BseDI CCNNGG 4 cut(s) 195, 337, 672, 1187
BseGI GGATG 4 cut(s) 270, 311, 1026, 1062
BseLI CCNNNNNNNGG 5 cut(s) 83, 119, 259, 962, 1104
BseMII CTCAG 3 cut(s) 165, 413, 795
BseNI ACTGG 2 cut(s) 377, 1085
BseRI GAGGAG 1 cut(s) 326
BseXI GCAGC 1 cut(s) 772
BseYI CCCAGC 1 cut(s) 130
Bsh1236I CGCG 2 cut(s) 917, 1046
Bsh1285I CGRYCG 1 cut(s) 960
BshFI GGCC 4 cut(s) 200, 228, 714, 1186
BshNI GGYRCC 1 cut(s) 1267
BshTI ACCGGT 1 cut(s) 83
BsiEI CGRYCG 1 cut(s) 960
BsiHKAI GWGCWC 1 cut(s) 336
BsiHKCI CYCGRG 2 cut(s) 8, 1097
BslFI GGGAC 1 cut(s) 1015
BslI CCNNNNNNNGG 5 cut(s) 83, 119, 259, 962, 1104
BsmAI GTCTC 4 cut(s) 360, 607, 699, 765
BsmFI GGGAC 1 cut(s) 1015
BsnI GGCC 4 cut(s) 200, 228, 714, 1186
Bso31I GGTCTC 1 cut(s) 607
BsoBI CYCGRG 2 cut(s) 8, 1097
Bsp1286I GDGCHC 2 cut(s) 336, 710
Bsp1407I TGTACA 1 cut(s) 906
Bsp143I GATC 3 cut(s) 685, 957, 1191
BspACI CCGC 7 cut(s) 246, 917, 947, 974, 1124, 1127, 1181
BspANI GGCC 4 cut(s) 200, 228, 714, 1186
BspCNI CTCAG 3 cut(s) 166, 414, 794
BspFNI CGCG 2 cut(s) 917, 1046
BspLI GGNNCC 5 cut(s) 709, 877, 954, 1185, 1269
BspPI GGATC 1 cut(s) 1199
BspT107I GGYRCC 1 cut(s) 1267
BspTNI GGTCTC 1 cut(s) 607
BsrFI RCCGGY 2 cut(s) 83, 949
BsrGI TGTACA 1 cut(s) 906
BsrI ACTGG 2 cut(s) 377, 1085
BssAI RCCGGY 2 cut(s) 83, 949
BssECI CCNNGG 4 cut(s) 195, 337, 672, 1187
BssMI GATC 3 cut(s) 685, 957, 1191
Bst2UI CCWGG 3 cut(s) 329, 674, 796
Bst4CI ACNGT 3 cut(s) 259, 587, 1351
Bst6I CTCTTC 6 cut(s) 641, 763, 852, 1223, 1247, 1271
BstAPI GCANNNNNTGC 1 cut(s) 688
BstAUI TGTACA 1 cut(s) 906
BstC8I GCNNGC 2 cut(s) 95, 500
BstDEI CTNAG 4 cut(s) 22, 174, 422, 781
BstEII GGTNACC 1 cut(s) 1345
BstF5I GGATG 4 cut(s) 270, 311, 1026, 1062
BstFNI CGCG 2 cut(s) 917, 1046
BstH2I RGCGCY 1 cut(s) 923
BstHHI GCGC 1 cut(s) 922
BstKTI GATC 3 cut(s) 688, 960, 1194
BstMAI GTCTC 4 cut(s) 360, 607, 699, 765
BstMBI GATC 3 cut(s) 685, 957, 1191
BstMCI CGRYCG 1 cut(s) 960
BstMWI GCNNNNNNNGC 3 cut(s) 43, 688, 946
BstNI CCWGG 3 cut(s) 329, 674, 796
BstPI GGTNACC 1 cut(s) 1345
BstSCI CCNGG 4 cut(s) 75, 327, 672, 794
BstUI CGCG 2 cut(s) 917, 1046
BstV1I GCAGC 1 cut(s) 772
BstV2I GAAGAC 2 cut(s) 444, 674
BstX2I RGATCY 1 cut(s) 1191
BstYI RGATCY 1 cut(s) 1191
BsuRI GGCC 4 cut(s) 200, 228, 714, 1186
BtgZI GCGATG 1 cut(s) 1061
BtrI CACGTC 2 cut(s) 442, 1120
BtsCI GGATG 4 cut(s) 270, 311, 1026, 1062
BtsI GCAGTG 1 cut(s) 1032
BtsIMutI CAGTG 3 cut(s) 171, 255, 1032
Cac8I GCNNGC 2 cut(s) 95, 500
CfoI GCGC 1 cut(s) 922
Cfr10I RCCGGY 2 cut(s) 83, 949
Cfr13I GGNCC 1 cut(s) 1184
CsiI ACCWGGT 1 cut(s) 794
Csp6I GTAC 4 cut(s) 473, 907, 943, 1033
CspAI ACCGGT 1 cut(s) 83
CviAII CATG 4 cut(s) 149, 165, 934, 1037
CviQI GTAC 4 cut(s) 473, 907, 943, 1033
DdeI CTNAG 4 cut(s) 22, 174, 422, 781
DpnI GATC 3 cut(s) 687, 959, 1193
DpnII GATC 3 cut(s) 685, 957, 1191
DrdI GACNNNNNNGTC 1 cut(s) 676
DseDI GACNNNNNNGTC 1 cut(s) 676
EaeI YGGCCR 3 cut(s) 198, 226, 712
Eam1104I CTCTTC 6 cut(s) 641, 763, 852, 1223, 1247, 1271
EarI CTCTTC 6 cut(s) 641, 763, 852, 1223, 1247, 1271
EciI GGCGGA 1 cut(s) 1142
Ecl136II GAGCTC 1 cut(s) 334
Eco24I GRGCYC 2 cut(s) 336, 710
Eco31I GGTCTC 1 cut(s) 607
Eco53kI GAGCTC 1 cut(s) 334
Eco57I CTGAAG 1 cut(s) 167
Eco88I CYCGRG 2 cut(s) 8, 1097
Eco91I GGTNACC 1 cut(s) 1345
EcoICRI GAGCTC 1 cut(s) 334
EcoO65I GGTNACC 1 cut(s) 1345
EcoRI GAATTC 1 cut(s) 404
EcoRII CCWGG 3 cut(s) 327, 672, 794
EcoT38I GRGCYC 2 cut(s) 336, 710
FaeI CATG 4 cut(s) 152, 168, 937, 1040
FaiI YATR 8 cut(s) 109, 150, 166, 885, 911, 935, 1038, 1069
FalI AAGNNNNNCTT 2 cut(s) 269, 301
FaqI GGGAC 1 cut(s) 1015
FatI CATG 4 cut(s) 148, 164, 933, 1036
FauI CCCGC 2 cut(s) 954, 1174
Fnu4HI GCNGC 3 cut(s) 786, 918, 1125
FokI GGATG 4 cut(s) 257, 298, 1033, 1069
FriOI GRGCYC 2 cut(s) 336, 710
Fsp4HI GCNGC 3 cut(s) 786, 918, 1125
FspBI CTAG 2 cut(s) 17, 495
GlaI GCGC 1 cut(s) 921
GluI GCNGC 3 cut(s) 786, 918, 1125
GsaI CCCAGC 1 cut(s) 134
GsuI CTGGAG 3 cut(s) 311, 379, 695
HaeII RGCGCY 1 cut(s) 923
HaeIII GGCC 4 cut(s) 200, 228, 714, 1186
HhaI GCGC 1 cut(s) 922
Hin1II CATG 4 cut(s) 152, 168, 937, 1040
Hin6I GCGC 1 cut(s) 920
HinP1I GCGC 1 cut(s) 920
HincII GTYRAC 1 cut(s) 448
HindII GTYRAC 1 cut(s) 448
HinfI GANTC 6 cut(s) 159, 308, 561, 677, 699, 1154
HphI GGTGA 6 cut(s) 206, 235, 727, 748, 988, 1339
Hpy166II GTNNAC 5 cut(s) 171, 448, 907, 979, 1042
Hpy188I TCNGA 7 cut(s) 186, 607, 721, 792, 868, 957, 1094
Hpy188III TCNNGA 6 cut(s) 8, 277, 382, 512, 696, 832
Hpy8I GTNNAC 5 cut(s) 171, 448, 907, 979, 1042
Hpy99I CGWCG 7 cut(s) 242, 347, 725, 833, 965, 986, 989
HpyAV CCTTC 7 cut(s) 553, 865, 889, 1009, 1144, 1198, 1324
HpyCH4III ACNGT 3 cut(s) 259, 587, 1351
HpyCH4IV ACGT 4 cut(s) 441, 828, 987, 1119
HpyCH4V TGCA 1 cut(s) 1222
HpyF10VI GCNNNNNNNGC 3 cut(s) 43, 688, 946
HpyF3I CTNAG 4 cut(s) 22, 174, 422, 781
HpySE526I ACGT 4 cut(s) 441, 828, 987, 1119
Hsp92II CATG 4 cut(s) 152, 168, 937, 1040
HspAI GCGC 1 cut(s) 920
Kzo9I GATC 3 cut(s) 685, 957, 1191
LmnI GCTCC 8 cut(s) 42, 102, 331, 339, 713, 875, 1060, 1111
Lsp1109I GCAGC 1 cut(s) 772
MabI ACCWGGT 1 cut(s) 794
MaeI CTAG 2 cut(s) 17, 495
MaeII ACGT 4 cut(s) 441, 828, 987, 1119
MaeIII GTNAC 5 cut(s) 86, 241, 733, 1115, 1345
MalI GATC 3 cut(s) 687, 959, 1193
MboI GATC 3 cut(s) 685, 957, 1191
MflI RGATCY 1 cut(s) 1191
MhlI GDGCHC 2 cut(s) 336, 710
MluCI AATT 4 cut(s) 321, 404, 428, 840
MlyI GAGTC 4 cut(s) 153, 317, 686, 1148
MmeI TCCRAC 3 cut(s) 744, 1089, 1117
MseI TTAA 2 cut(s) 1260, 1366
MslI CAYNNNNRTG 1 cut(s) 1352
MspA1I CMGCKG 1 cut(s) 785
MspR9I CCNGG 4 cut(s) 77, 329, 674, 796
MvaI CCWGG 3 cut(s) 329, 674, 796
MvnI CGCG 2 cut(s) 917, 1046
MwoI GCNNNNNNNGC 3 cut(s) 43, 688, 946
NciI CCSGG 1 cut(s) 77
NdeII GATC 3 cut(s) 685, 957, 1191
NlaIII CATG 4 cut(s) 152, 168, 937, 1040
NlaIV GGNNCC 5 cut(s) 709, 877, 954, 1185, 1269
NmeAIII GCCGAG 3 cut(s) 176, 318, 1212
NmuCI GTSAC 4 cut(s) 241, 733, 1115, 1345
OliI CACNNNNGTG 1 cut(s) 1352
PaeR7I CTCGAG 1 cut(s) 8
PcsI WCGNNNNNNNCGW 4 cut(s) 438, 468, 729, 834
PfeI GAWTC 2 cut(s) 561, 699
PflFI GACNNNGTC 1 cut(s) 743
PfoI TCCNGGA 1 cut(s) 327
PinAI ACCGGT 1 cut(s) 83
PkrI GCNGC 3 cut(s) 787, 919, 1126
Ple19I CGATCG 1 cut(s) 960
PleI GAGTC 4 cut(s) 153, 316, 685, 1148
PpsI GAGTC 4 cut(s) 153, 316, 685, 1148
Psp124BI GAGCTC 1 cut(s) 336
Psp6I CCWGG 3 cut(s) 327, 672, 794
PspEI GGTNACC 1 cut(s) 1345
PspFI CCCAGC 1 cut(s) 130
PspGI CCWGG 3 cut(s) 327, 672, 794
PspN4I GGNNCC 5 cut(s) 709, 877, 954, 1185, 1269
PspPI GGNCC 1 cut(s) 1184
PsuI RGATCY 1 cut(s) 1191
PsyI GACNNNGTC 1 cut(s) 743
PvuI CGATCG 1 cut(s) 960
PvuII CAGCTG 1 cut(s) 785
RsaI GTAC 4 cut(s) 474, 908, 944, 1034
RsaNI GTAC 4 cut(s) 473, 907, 943, 1033
RseI CAYNNNNRTG 1 cut(s) 1352
SacI GAGCTC 1 cut(s) 336
SaqAI TTAA 2 cut(s) 1260, 1366
SatI GCNGC 3 cut(s) 786, 918, 1125
Sau3AI GATC 3 cut(s) 685, 957, 1191
Sau96I GGNCC 1 cut(s) 1184
SchI GAGTC 4 cut(s) 153, 317, 686, 1148
ScrFI CCNGG 4 cut(s) 77, 329, 674, 796
SduI GDGCHC 2 cut(s) 336, 710
SexAI ACCWGGT 1 cut(s) 794
Sfr274I CTCGAG 1 cut(s) 8
SlaI CTCGAG 1 cut(s) 8
SmiMI CAYNNNNRTG 1 cut(s) 1352
SmlI CTYRAG 4 cut(s) 8, 59, 275, 845
SmoI CTYRAG 4 cut(s) 8, 59, 275, 845
Sse9I AATT 4 cut(s) 321, 404, 428, 840
SsiI CCGC 7 cut(s) 246, 917, 947, 974, 1124, 1127, 1181
SspMI CTAG 2 cut(s) 17, 495
SstI GAGCTC 1 cut(s) 336
StyD4I CCNGG 4 cut(s) 75, 327, 672, 794
TaaI ACNGT 3 cut(s) 259, 587, 1351
TaiI ACGT 4 cut(s) 444, 831, 990, 1122
TaqI TCGA 5 cut(s) 9, 546, 697, 831, 960
TasI AATT 4 cut(s) 321, 404, 428, 840
TatI WGTACW 1 cut(s) 906
TauI GCSGC 2 cut(s) 920, 1127
TfiI GAWTC 2 cut(s) 561, 699
Tru1I TTAA 2 cut(s) 1260, 1366
Tru9I TTAA 2 cut(s) 1260, 1366
TscAI CASTG 3 cut(s) 178, 262, 1032
TseFI GTSAC 4 cut(s) 241, 733, 1115, 1345
TseI GCWGC 1 cut(s) 785
Tsp45I GTSAC 4 cut(s) 241, 733, 1115, 1345
TspDTI ATGAA 5 cut(s) 114, 680, 903, 1241, 1343
TspGWI ACGGA 2 cut(s) 226, 378
TspRI CASTG 3 cut(s) 178, 262, 1032
Tth111I GACNNNGTC 1 cut(s) 743
XapI RAATTY 4 cut(s) 321, 404, 428, 840
XcmI CCANNNNNNNNNTGG 1 cut(s) 256
XhoI CTCGAG 1 cut(s) 8
XspI CTAG 2 cut(s) 17, 495
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.