Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0012870

Physical Location & Seq

Genomic Coordinates Forward (+)

19937014 .. 19938564

Gene Structure 1551 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 888 bp

ATGCCTGTGAGGAGTATGGTTTCTTCAAGATCGATCATCAACCATGGTGTTCCAATGGACTTCATCACAAGATTGGAATCTGAGGCCATCAAATTCTTCTCCCTCCCACTTTCTGAGAAGGAAAAGTCAGGGCCTCCTAATCCATTAGGATATGGGAACAAGCATATTGGGAAGAATGGTGATGTTGGTTGGGTTGAGTACCTCCTTCTCACAACCAATACAGAATCCATTTCCCAAAGGTTTCTATCAGTTTTTGGAAATAACGCAGAAGAGTTTTGTTCTGCTTTGAATGATTACATATCAGCTGTGAAGAAAATGACCTGTGAGATTCTTGAGCTGATGTCTGAAGGATTGAAGATTCAACCAAGGAATGTGTTCAGTAAGCTTTTGATGGATGAACAGAGCGATTCTTGTTTCAGGCTCAATCACTACCCACCATGCCCAGAGCTTCAAGGTTTGAGTAGTGCCAGTACCAGAAATGTGATTGGATTTGGAGAGCACACAGACCCACAAATCATTTCTGTGCTAAGATCCAACAATACATCTGGCCTCCAAATTTCTTTGAGAGATGGGAGTTGGATTTCAGTCCCACCTGATCAGAACTCCTTCTTTATCAATGTTGGTGACTCTTTACAGGTTTTGACTAATGGGAGGTTTGAAAGTGTGAGGCACAGGGTTTTGGCAAATGGTTTAAAATCAAGAGTGTCAATGATTTATTTTGGGGGACCACCCTTGAGTGAGAAAATAGCTCCATTGCAATCTGTCATGAATGCAGAGGAGGAAAGCATGTACAAGGAGTTTACATGGTTTGAGTACAAAAAATCTGCCTACAGCTCAAGACTTGCAGATAATAGGCTTGGACACTTTGAGAGAATTGCAGCCGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006082 GO:0006629 GO:0006720 GO:0006721 GO:0008150 GO:0008152 GO:0008300 GO:0009056 GO:0009314 GO:0009416 GO:0009628 GO:0009685 GO:0009987 GO:0010817 GO:0016042 GO:0016054 GO:0016101 GO:0016103 GO:0016115 GO:0016491 GO:0016705 GO:0016706 GO:0019752 GO:0042445 GO:0042447 GO:0043436 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0044281 GO:0044282 GO:0045487 GO:0045543 GO:0046395 GO:0050896 GO:0051213 GO:0052634 GO:0055114 GO:0065007 GO:0065008 GO:0071704 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00904 ko01110 map00904 map01110

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

296

Amino Acids

33.0

Weight (kDa)

6.33

Isoelectric Point (pI)

49.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DIOX_N	PF14226	12 - 74	2.2e-07	non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy	PF03171	136 - 241	5.5e-30	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012870)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G78440
fragaria_vesca	FvH4_3g16760 FvH4_3g16760
malus_domestica	MD05G1207000.v1.1 MD10G1194100.v1.1
prunus_persica	Prupe.4G150200_v2.0.a1
pyrus_communis	pycom05g19330 pycom10g16790
rosa_chinensis	RchiOBHm_Chr5g0027981
rosa_laevigata	RLG00000033053
rosa_multiflora	Rmu_sc0000309.1_g000005
rosa_roxburghii	Rroxscaffold_1G00051690
rosa_rugosa	Rorug05G0102600
rosa_samantha	Rh5AG196900 Rh5BG194900 Rh5CG215200 Rh5DG196700
rosa_wichuraiana	Rw5G017920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	882
AclWI	GGATC	1 cut(s)	525
AcsI	RAATTY	2 cut(s)	92, 555
AcuI	CTGAAG	1 cut(s)	366
AfaI	GTAC	4 cut(s)	200, 472, 791, 815
AgsI	TTSAA	6 cut(s)	27, 289, 355, 362, 452, 659
AluBI	AGCT	6 cut(s)	305, 337, 385, 448, 749, 834
AluI	AGCT	6 cut(s)	305, 337, 385, 448, 749, 834
Alw21I	GWGCWC	1 cut(s)	501
AlwI	GGATC	1 cut(s)	525
AoxI	GGCC	3 cut(s)	84, 131, 547
ApeKI	GCWGC	1 cut(s)	878
ApoI	RAATTY	2 cut(s)	92, 555
Asp700I	GAANNNNTTC	2 cut(s)	374, 605
AspS9I	GGNCC	2 cut(s)	131, 725
AsuHPI	GGTGA	2 cut(s)	191, 635
AvaII	GGWCC	1 cut(s)	725
BarI	GAAGNNNNNNTAC	2 cut(s)	7, 39
Bbv12I	GWGCWC	1 cut(s)	501
BccI	CCATC	3 cut(s)	95, 385, 563
BclI	TGATCA	1 cut(s)	595
BfmI	CTRYAG	1 cut(s)	829
BisI	GCNGC	2 cut(s)	879, 882
BlsI	GCNGC	2 cut(s)	880, 883
Bme18I	GGWCC	1 cut(s)	725
BmgT120I	GGNCC	2 cut(s)	131, 725
BmiI	GGNNCC	1 cut(s)	726
BpuEI	CTTGAG	3 cut(s)	353, 754, 820
Bsa29I	ATCGAT	1 cut(s)	32
BsaBI	GATNNNNATC	1 cut(s)	76
BsaJI	CCNNGG	2 cut(s)	43, 365
Bse1I	ACTGG	1 cut(s)	468
Bse3DI	GCAATG	1 cut(s)	752
Bse8I	GATNNNNATC	1 cut(s)	76
BseCI	ATCGAT	1 cut(s)	32
BseDI	CCNNGG	2 cut(s)	43, 365
BseGI	GGATG	1 cut(s)	400
BseJI	GATNNNNATC	1 cut(s)	76
BseMI	GCAATG	1 cut(s)	752
BseMII	CTCAG	2 cut(s)	72, 105
BseNI	ACTGG	1 cut(s)	468
BseRI	GAGGAG	2 cut(s)	25, 791
BshFI	GGCC	3 cut(s)	86, 133, 549
BshVI	ATCGAT	1 cut(s)	32
BsiHKAI	GWGCWC	1 cut(s)	501
BslFI	GGGAC	2 cut(s)	572, 738
BsmFI	GGGAC	2 cut(s)	572, 738
BsmI	GAATGC	1 cut(s)	775
BsnI	GGCC	3 cut(s)	86, 133, 549
Bsp1286I	GDGCHC	1 cut(s)	501
Bsp1407I	TGTACA	1 cut(s)	789
Bsp143I	GATC	4 cut(s)	29, 33, 530, 595
Bsp19I	CCATGG	1 cut(s)	43
BspACI	CCGC	1 cut(s)	882
BspANI	GGCC	3 cut(s)	86, 133, 549
BspCNI	CTCAG	2 cut(s)	73, 106
BspDI	ATCGAT	1 cut(s)	32
BspHI	TCATGA	1 cut(s)	765
BspLI	GGNNCC	1 cut(s)	726
BspPI	GGATC	1 cut(s)	525
BsrDI	GCAATG	1 cut(s)	752
BsrGI	TGTACA	1 cut(s)	789
BsrI	ACTGG	1 cut(s)	468
BssECI	CCNNGG	2 cut(s)	43, 365
BssMI	GATC	4 cut(s)	29, 33, 530, 595
BssT1I	CCWWGG	2 cut(s)	43, 365
Bst6I	CTCTTC	1 cut(s)	264
BstAUI	TGTACA	1 cut(s)	789
BstDEI	CTNAG	3 cut(s)	81, 114, 527
BstDSI	CCRYGG	1 cut(s)	43
BstF5I	GGATG	1 cut(s)	400
BstKTI	GATC	4 cut(s)	32, 36, 533, 598
BstMBI	GATC	4 cut(s)	29, 33, 530, 595
BstNSI	RCATGY	1 cut(s)	790
BstSFI	CTRYAG	1 cut(s)	829
BstX2I	RGATCY	1 cut(s)	530
BstYI	RGATCY	1 cut(s)	530
Bsu15I	ATCGAT	1 cut(s)	32
BsuRI	GGCC	3 cut(s)	86, 133, 549
BsuTUI	ATCGAT	1 cut(s)	32
BtgI	CCRYGG	1 cut(s)	43
BtsCI	GGATG	1 cut(s)	400
CciI	TCATGA	1 cut(s)	765
Cfr13I	GGNCC	2 cut(s)	131, 725
ClaI	ATCGAT	1 cut(s)	32
Csp6I	GTAC	4 cut(s)	199, 471, 790, 814
CviAII	CATG	5 cut(s)	44, 438, 766, 787, 804
CviQI	GTAC	4 cut(s)	199, 471, 790, 814
DdeI	CTNAG	3 cut(s)	81, 114, 527
DpnI	GATC	4 cut(s)	31, 35, 532, 597
DpnII	GATC	4 cut(s)	29, 33, 530, 595
DraI	TTTAAA	1 cut(s)	693
Eam1104I	CTCTTC	1 cut(s)	264
EarI	CTCTTC	1 cut(s)	264
Eco130I	CCWWGG	2 cut(s)	43, 365
Eco47I	GGWCC	1 cut(s)	725
Eco57I	CTGAAG	1 cut(s)	366
EcoO109I	RGGNCCY	1 cut(s)	131
EcoT14I	CCWWGG	2 cut(s)	43, 365
ErhI	CCWWGG	2 cut(s)	43, 365
FaeI	CATG	5 cut(s)	47, 441, 769, 790, 807
FaqI	GGGAC	2 cut(s)	572, 738
FatI	CATG	5 cut(s)	43, 437, 765, 786, 803
FbaI	TGATCA	1 cut(s)	595
Fnu4HI	GCNGC	2 cut(s)	879, 882
FokI	GGATG	1 cut(s)	407
Fsp4HI	GCNGC	2 cut(s)	879, 882
GluI	GCNGC	2 cut(s)	879, 882
HaeIII	GGCC	3 cut(s)	86, 133, 549
Hin1II	CATG	5 cut(s)	47, 441, 769, 790, 807
HindIII	AAGCTT	1 cut(s)	383
HinfI	GANTC	6 cut(s)	77, 224, 328, 358, 407, 626
HphI	GGTGA	2 cut(s)	191, 635
Hpy166II	GTNNAC	1 cut(s)	801
Hpy188I	TCNGA	4 cut(s)	82, 115, 346, 600
Hpy188III	TCNNGA	5 cut(s)	27, 332, 699, 766, 837
Hpy8I	GTNNAC	1 cut(s)	801
HpyAV	CCTTC	4 cut(s)	112, 215, 341, 616
HpyCH4V	TGCA	4 cut(s)	757, 773, 845, 878
HpyF3I	CTNAG	3 cut(s)	81, 114, 527
Hsp92II	CATG	5 cut(s)	47, 441, 769, 790, 807
Ksp22I	TGATCA	1 cut(s)	595
Kzo9I	GATC	4 cut(s)	29, 33, 530, 595
LmnI	GCTCC	1 cut(s)	754
MaeIII	GTNAC	1 cut(s)	623
MalI	GATC	4 cut(s)	31, 35, 532, 597
MboI	GATC	4 cut(s)	29, 33, 530, 595
MboII	GAAGA	6 cut(s)	15, 88, 184, 281, 322, 367
MflI	RGATCY	1 cut(s)	530
MhlI	GDGCHC	1 cut(s)	501
MluCI	AATT	3 cut(s)	92, 555, 873
MlyI	GAGTC	1 cut(s)	620
MmeI	TCCRAC	2 cut(s)	557, 558
MroXI	GAANNNNTTC	2 cut(s)	374, 605
MseI	TTAA	1 cut(s)	692
MslI	CAYNNNNRTG	1 cut(s)	521
MspA1I	CMGCKG	1 cut(s)	305
Mva1269I	GAATGC	1 cut(s)	775
NcoI	CCATGG	1 cut(s)	43
NdeII	GATC	4 cut(s)	29, 33, 530, 595
NlaIII	CATG	5 cut(s)	47, 441, 769, 790, 807
NlaIV	GGNNCC	1 cut(s)	726
NmuCI	GTSAC	1 cut(s)	623
NspI	RCATGY	1 cut(s)	790
PagI	TCATGA	1 cut(s)	765
PctI	GAATGC	1 cut(s)	775
PdmI	GAANNNNTTC	2 cut(s)	374, 605
PfeI	GAWTC	5 cut(s)	77, 224, 328, 358, 407
PkrI	GCNGC	2 cut(s)	880, 883
PleI	GAGTC	1 cut(s)	620
PpsI	GAGTC	1 cut(s)	620
PspN4I	GGNNCC	1 cut(s)	726
PspPI	GGNCC	2 cut(s)	131, 725
PsuI	RGATCY	1 cut(s)	530
PvuII	CAGCTG	1 cut(s)	305
RsaI	GTAC	4 cut(s)	200, 472, 791, 815
RsaNI	GTAC	4 cut(s)	199, 471, 790, 814
RseI	CAYNNNNRTG	1 cut(s)	521
SaqAI	TTAA	1 cut(s)	692
SatI	GCNGC	2 cut(s)	879, 882
Sau3AI	GATC	4 cut(s)	29, 33, 530, 595
Sau96I	GGNCC	2 cut(s)	131, 725
SchI	GAGTC	1 cut(s)	620
SduI	GDGCHC	1 cut(s)	501
SfcI	CTRYAG	1 cut(s)	829
SinI	GGWCC	1 cut(s)	725
SmiMI	CAYNNNNRTG	1 cut(s)	521
SmlI	CTYRAG	3 cut(s)	332, 733, 835
SmoI	CTYRAG	3 cut(s)	332, 733, 835
Sse9I	AATT	3 cut(s)	92, 555, 873
SsiI	CCGC	1 cut(s)	882
StyI	CCWWGG	2 cut(s)	43, 365
TaqI	TCGA	1 cut(s)	32
TasI	AATT	3 cut(s)	92, 555, 873
TatI	WGTACW	2 cut(s)	789, 813
TauI	GCSGC	1 cut(s)	884
TfiI	GAWTC	5 cut(s)	77, 224, 328, 358, 407
Tru1I	TTAA	1 cut(s)	692
Tru9I	TTAA	1 cut(s)	692
TseFI	GTSAC	1 cut(s)	623
TseI	GCWGC	1 cut(s)	878
Tsp45I	GTSAC	1 cut(s)	623
TspDTI	ATGAA	3 cut(s)	52, 411, 782
VpaK11BI	GGWCC	1 cut(s)	725
XapI	RAATTY	2 cut(s)	92, 555
XceI	RCATGY	1 cut(s)	790
XmnI	GAANNNNTTC	2 cut(s)	374, 605

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.