pycom10g17290

Auxin responsive protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr10
OG0015978
Physical Location & Seq
Forward (+)
20503921 .. 20504325
405 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 405 bp
ATGAAGAAGATGAATATTCTGCTAAGGAAGTGCAAGAGCTTGTCAAGGCAGCTAGGGAGATCGTCGTCGTATAGTAGCCTAAGGTCGAAATCTACGAGGGAAGCTATATTCAGGCATGAAAATCATGAGCTTCATCCTCATCATCATCACCAAACTATAATATATGTAGGAAGCACGAGGAAACGTTACGTGATTAGCTCAAAGTACCTCAATCATCCGTTGTTAAATGCCTTGATCGACAAGTCATCGAAGCAAAAGCGAGGAGAGGAGGATGATATATTTGTCAACTGTGAGGTGGTTTTGTTTGATCACTTGTTGTGGATGCTGGAGAATAATGCAGAAGATCCCAGCTTTGGTAGCACTTCAGAGTCATTGGAGGAATTGGCTGCCCTCTATGTGTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Auxin_inducible

Protein Analysis

135

Amino Acids

15.61

Weight (kDa)

8.91

Isoelectric Point (pI)

57.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Auxin_inducible PF02519 28 - 109 9.7e-17 Auxin responsive protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015978)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G12955
fragaria_vesca FvH4_3g15820
malus_domestica MD05G1219800.v1.1 MD10G1202100.v1.1
prunus_persica Prupe.4G140200_v2.0.a1
pyrus_communis pycom05g20110 pycom10g17290
rosa_chinensis RchiOBHm_Chr5g0026611
rosa_multiflora Rmu_sc0018952.1_g000005
rosa_rugosa Rorug05G0094200
rosa_samantha Rh5AG187600 Rh5BG184100 Rh5CG204100 Rh5DG186400
rosa_wichuraiana Rw5G016990

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclI AACGTT 1 cut(s) 184
AclWI GGATC 1 cut(s) 338
AcuI CTGAAG 1 cut(s) 348
AfaI GTAC 1 cut(s) 206
AfiI CCNNNNNNNGG 1 cut(s) 353
AluBI AGCT 6 cut(s) 39, 52, 104, 130, 198, 351
AluI AGCT 6 cut(s) 39, 52, 104, 130, 198, 351
AlwI GGATC 1 cut(s) 338
ApeKI GCWGC 2 cut(s) 49, 386
AsuHPI GGTGA 1 cut(s) 140
AxyI CCTNAGG 1 cut(s) 80
BauI CACGAG 1 cut(s) 175
BbvI GCAGC 2 cut(s) 61, 373
BclI TGATCA 1 cut(s) 307
BfaI CTAG 1 cut(s) 53
BisI GCNGC 2 cut(s) 50, 387
BlsI GCNGC 2 cut(s) 51, 388
BmsI GCATC 1 cut(s) 312
BpmI CTGGAG 1 cut(s) 347
Bpu10I CCTNAGC 1 cut(s) 23
BsaAI YACGTR 1 cut(s) 190
Bsc4I CCNNNNNNNGG 1 cut(s) 353
Bse21I CCTNAGG 1 cut(s) 80
BseGI GGATG 4 cut(s) 133, 214, 277, 327
BseLI CCNNNNNNNGG 1 cut(s) 353
BseRI GAGGAG 2 cut(s) 276, 281
BseXI GCAGC 2 cut(s) 61, 373
BseYI CCCAGC 1 cut(s) 347
BslI CCNNNNNNNGG 1 cut(s) 353
Bsp143I GATC 4 cut(s) 59, 234, 307, 343
BspHI TCATGA 1 cut(s) 124
BspPI GGATC 1 cut(s) 338
BssMI GATC 4 cut(s) 59, 234, 307, 343
BssSI CACGAG 1 cut(s) 175
Bst2BI CACGAG 1 cut(s) 175
Bst4CI ACNGT 1 cut(s) 290
BstBAI YACGTR 1 cut(s) 190
BstDEI CTNAG 2 cut(s) 23, 80
BstF5I GGATG 4 cut(s) 133, 214, 277, 327
BstKTI GATC 4 cut(s) 62, 237, 310, 346
BstMBI GATC 4 cut(s) 59, 234, 307, 343
BstMWI GCNNNNNNNGC 1 cut(s) 357
BstV1I GCAGC 2 cut(s) 61, 373
BstX2I RGATCY 1 cut(s) 343
BstYI RGATCY 1 cut(s) 343
Bsu36I CCTNAGG 1 cut(s) 80
BtsCI GGATG 4 cut(s) 133, 214, 277, 327
CciI TCATGA 1 cut(s) 124
Csp6I GTAC 1 cut(s) 205
CviAII CATG 2 cut(s) 116, 125
CviJI RGCY 8 cut(s) 39, 52, 78, 104, 130, 198, 351, 386
CviKI_1 RGCY 8 cut(s) 39, 52, 78, 104, 130, 198, 351, 386
CviQI GTAC 1 cut(s) 205
DdeI CTNAG 2 cut(s) 23, 80
DpnI GATC 4 cut(s) 61, 236, 309, 345
DpnII GATC 4 cut(s) 59, 234, 307, 343
Eco57I CTGAAG 1 cut(s) 348
Eco81I CCTNAGG 1 cut(s) 80
FaeI CATG 2 cut(s) 119, 128
FaiI YATR 9 cut(s) 72, 107, 117, 126, 158, 163, 165, 278, 396
FatI CATG 2 cut(s) 115, 124
FbaI TGATCA 1 cut(s) 307
Fnu4HI GCNGC 2 cut(s) 50, 387
FokI GGATG 4 cut(s) 120, 201, 284, 334
Fsp4HI GCNGC 2 cut(s) 50, 387
FspBI CTAG 1 cut(s) 53
GluI GCNGC 2 cut(s) 50, 387
GsaI CCCAGC 1 cut(s) 351
GsuI CTGGAG 1 cut(s) 347
Hin1II CATG 2 cut(s) 119, 128
HincII GTYRAC 1 cut(s) 286
HindII GTYRAC 1 cut(s) 286
HinfI GANTC 1 cut(s) 368
HphI GGTGA 1 cut(s) 140
Hpy166II GTNNAC 1 cut(s) 286
Hpy188I TCNGA 2 cut(s) 367, 404
Hpy188III TCNNGA 1 cut(s) 125
Hpy8I GTNNAC 1 cut(s) 286
Hpy99I CGWCG 2 cut(s) 67, 70
HpyCH4III ACNGT 1 cut(s) 290
HpyCH4IV ACGT 2 cut(s) 184, 189
HpyCH4V TGCA 2 cut(s) 33, 338
HpyF10VI GCNNNNNNNGC 1 cut(s) 357
HpyF3I CTNAG 2 cut(s) 23, 80
HpySE526I ACGT 2 cut(s) 184, 189
Hsp92II CATG 2 cut(s) 119, 128
Ksp22I TGATCA 1 cut(s) 307
Kzo9I GATC 4 cut(s) 59, 234, 307, 343
LpnPI CCDG 3 cut(s) 97, 311, 361
Lsp1109I GCAGC 2 cut(s) 61, 373
LweI GCATC 1 cut(s) 312
MaeI CTAG 1 cut(s) 53
MaeII ACGT 2 cut(s) 184, 189
MaeIII GTNAC 1 cut(s) 185
MalI GATC 4 cut(s) 61, 236, 309, 345
MboI GATC 4 cut(s) 59, 234, 307, 343
MboII GAAGA 3 cut(s) 16, 19, 353
MflI RGATCY 1 cut(s) 343
MluCI AATT 1 cut(s) 380
MlyI GAGTC 1 cut(s) 377
MseI TTAA 1 cut(s) 224
MwoI GCNNNNNNNGC 1 cut(s) 357
NdeII GATC 4 cut(s) 59, 234, 307, 343
NlaIII CATG 2 cut(s) 119, 128
PagI TCATGA 1 cut(s) 124
PcsI WCGNNNNNNNCGW 1 cut(s) 92
PkrI GCNGC 2 cut(s) 51, 388
PleI GAGTC 1 cut(s) 376
PpsI GAGTC 1 cut(s) 376
Ppu21I YACGTR 1 cut(s) 190
Psp1406I AACGTT 1 cut(s) 184
PspFI CCCAGC 1 cut(s) 347
PsuI RGATCY 1 cut(s) 343
RsaI GTAC 1 cut(s) 206
RsaNI GTAC 1 cut(s) 205
SaqAI TTAA 1 cut(s) 224
SatI GCNGC 2 cut(s) 50, 387
Sau3AI GATC 4 cut(s) 59, 234, 307, 343
SchI GAGTC 1 cut(s) 377
SfaNI GCATC 1 cut(s) 312
Sse9I AATT 1 cut(s) 380
SspI AATATT 1 cut(s) 16
SspMI CTAG 1 cut(s) 53
TaaI ACNGT 1 cut(s) 290
TaiI ACGT 2 cut(s) 187, 192
TaqI TCGA 3 cut(s) 86, 237, 248
TasI AATT 1 cut(s) 380
Tru1I TTAA 1 cut(s) 224
Tru9I TTAA 1 cut(s) 224
TseI GCWGC 2 cut(s) 49, 386
TspDTI ATGAA 4 cut(s) 17, 26, 122, 132
TspGWI ACGGA 1 cut(s) 207
XspI CTAG 1 cut(s) 53
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.