pycom10g17980

Uncharacterized conserved protein (DUF2358)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr10
OG0013249
Physical Location & Seq
Forward (+)
21139249 .. 21140213
965 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 783 bp
ATGGCTTTTCTGCTACCAAACTTCTCTCCCTCCTCCCCACTCCTCCAAACCAAAACCAAAGAAAAACCCATTCACCAAACGCTCGCCCAGACAAAACCCAGTTTTTCTTTCTCTCACCTCTCTCCTCTCGCCAGCGTACAGACGCCCACTTTGTCGGAGGGTGCGCAGCTTAACACCTCCAGGGTTGCGCAGGATAAGCAGCAAAGGGACGACTTTTATGTCAATCTTGGCCTGGCCGTACGGACGCTTCGTGAAGATGTCCCCTTGATTTTTTCCAAGGACCTTAATTATGATATTTATAGGGATGATATAACATTTACGGATCCTTTGAACACATTTACTGGCATTGAGAATTACAAATTGATCTTCTGGGCTTTGAGATTTCATGGAAAGATTCTGTTCCGCGATATCTCCCTCGAGGTATATAGGATTTGGCAGCCTTCGGAGAATGTGATACTGATTAGGTGGAACATGAAGGGTGTTCCTCGGGTTCCATGGGAAGCGAAAGGACAGTTTCAGGGCACCTCGCGGTATAAATTGGATCGAAAGGGCAAAATATATGAACATAAAGTCGATAACTTGGCGTTTAACTTTCCACAGAAGCTCAAACCAGCTGCATCAGTGTTAGACTTAGTAGCAGCTTGCCCTGCAAGTCCTAACCTGACATTTCTGTGGGGTCCTGCGGATGCGTACTCATCTTCGTGGTTGGAGTTTTATCGAGCAGTGAGGGGGACTTTGAATCGGGATGGTTACTTGCTTCCACAAGATGGTTTGGTCAGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF2358

Protein Analysis

261

Amino Acids

29.73

Weight (kDa)

9.3

Isoelectric Point (pI)

40.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF2358 PF10184 79 - 189 8e-40 Uncharacterized conserved protein (DUF2358)
SnoaL_2 PF12680 98 - 189 3.9e-06 SnoaL-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013249)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G79510 AT1G79510
fragaria_vesca FvH4_3g14540
malus_domestica MD05G1235700.v1.1 MD10G1212200.v1.1
prunus_persica Prupe.4G130800_v2.0.a1
pyrus_communis pycom05g21250 pycom10g17980
rosa_chinensis RchiOBHm_Chr5g0023911
rosa_laevigata RLG00000032748
rosa_multiflora Rmu_sc0004175.1_g000013
rosa_roxburghii Rroxscaffold_1G00055300
rosa_rugosa Rorug05G0080300
rosa_samantha Rh5AG170600 Rh5BG167700 Rh5CG183200 Rh5DG169800
rosa_wichuraiana Rw5G015430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 218
AbsI CCTCGAGG 1 cut(s) 416
Acc16I TGCGCA 2 cut(s) 165, 189
AccB1I GGYRCC 1 cut(s) 521
AccB7I CCANNNNNTGG 1 cut(s) 767
AccII CGCG 2 cut(s) 405, 529
AciI CCGC 3 cut(s) 403, 529, 683
AclWI GGATC 3 cut(s) 317, 330, 549
AcoI YGGCCR 1 cut(s) 234
AcyI GRCGYC 1 cut(s) 143
AfaI GTAC 3 cut(s) 138, 240, 692
AfiI CCNNNNNNNGG 1 cut(s) 767
AgsI TTSAA 2 cut(s) 331, 739
AjnI CCWGG 2 cut(s) 179, 231
AluBI AGCT 5 cut(s) 169, 604, 614, 641, 780
AluI AGCT 5 cut(s) 169, 604, 614, 641, 780
AlwI GGATC 3 cut(s) 317, 330, 549
Ama87I CYCGRG 2 cut(s) 416, 486
AoxI GGCC 2 cut(s) 229, 234
ApeKI GCWGC 5 cut(s) 166, 199, 436, 614, 638
ArsI GACNNNNNNTTYG 2 cut(s) 133, 165
AspLEI GCGC 2 cut(s) 166, 190
AspS9I GGNCC 2 cut(s) 280, 677
AsuHPI GGTGA 2 cut(s) 65, 107
AvaI CYCGRG 2 cut(s) 416, 486
AvaII GGWCC 2 cut(s) 280, 677
BaeGI GKGCMC 1 cut(s) 524
BamHI GGATCC 1 cut(s) 322
BanI GGYRCC 1 cut(s) 521
BarI GAAGNNNNNNTAC 2 cut(s) 231, 263
BbvI GCAGC 5 cut(s) 178, 211, 448, 601, 650
BccI CCATC 2 cut(s) 740, 761
BceAI ACGGC 1 cut(s) 221
BciT130I CCWGG 2 cut(s) 181, 233
BisI GCNGC 5 cut(s) 167, 200, 437, 615, 639
BlsI GCNGC 5 cut(s) 168, 201, 438, 616, 640
Bme1390I CCNGG 2 cut(s) 181, 233
Bme18I GGWCC 2 cut(s) 280, 677
BmeT110I CYCGRG 2 cut(s) 416, 486
BmgT120I GGNCC 2 cut(s) 280, 677
BmiI GGNNCC 4 cut(s) 324, 492, 523, 678
BmrFI CCNGG 2 cut(s) 181, 233
BmrI ACTGGG 1 cut(s) 93
BmsI GCATC 2 cut(s) 626, 676
BmuI ACTGGG 1 cut(s) 93
BpmI CTGGAG 1 cut(s) 163
BsaHI GRCGYC 1 cut(s) 143
BsaJI CCNNGG 4 cut(s) 180, 276, 485, 494
Bsc4I CCNNNNNNNGG 1 cut(s) 767
Bse1I ACTGG 2 cut(s) 99, 346
BseBI CCWGG 2 cut(s) 181, 233
BseDI CCNNGG 4 cut(s) 180, 276, 485, 494
BseGI GGATG 3 cut(s) 310, 691, 751
BseLI CCNNNNNNNGG 1 cut(s) 767
BseNI ACTGG 2 cut(s) 99, 346
BseRI GAGGAG 3 cut(s) 22, 32, 114
BseSI GKGCMC 1 cut(s) 524
BseXI GCAGC 5 cut(s) 178, 211, 448, 601, 650
Bsh1236I CGCG 2 cut(s) 405, 529
BshFI GGCC 2 cut(s) 231, 236
BshNI GGYRCC 1 cut(s) 521
BsiHKCI CYCGRG 2 cut(s) 416, 486
BsiWI CGTACG 1 cut(s) 238
BslFI GGGAC 3 cut(s) 221, 245, 745
BslI CCNNNNNNNGG 1 cut(s) 767
BsmFI GGGAC 3 cut(s) 221, 245, 745
BsnI GGCC 2 cut(s) 231, 236
BsoBI CYCGRG 2 cut(s) 416, 486
Bsp1286I GDGCHC 1 cut(s) 524
Bsp143I GATC 3 cut(s) 322, 363, 541
Bsp19I CCATGG 1 cut(s) 494
BspACI CCGC 3 cut(s) 403, 529, 683
BspANI GGCC 2 cut(s) 231, 236
BspFNI CGCG 2 cut(s) 405, 529
BspLI GGNNCC 4 cut(s) 324, 492, 523, 678
BspPI GGATC 3 cut(s) 317, 330, 549
BspT107I GGYRCC 1 cut(s) 521
BsrI ACTGG 2 cut(s) 99, 346
BssECI CCNNGG 4 cut(s) 180, 276, 485, 494
BssMI GATC 3 cut(s) 322, 363, 541
BssNI GRCGYC 1 cut(s) 143
BssT1I CCWWGG 2 cut(s) 276, 494
Bst2UI CCWGG 2 cut(s) 181, 233
Bst4CI ACNGT 1 cut(s) 513
BstACI GRCGYC 1 cut(s) 143
BstC8I GCNNGC 3 cut(s) 84, 133, 643
BstDEI CTNAG 1 cut(s) 631
BstDSI CCRYGG 1 cut(s) 494
BstF5I GGATG 3 cut(s) 310, 691, 751
BstFNI CGCG 2 cut(s) 405, 529
BstHHI GCGC 2 cut(s) 166, 190
BstKTI GATC 3 cut(s) 325, 366, 544
BstMBI GATC 3 cut(s) 322, 363, 541
BstMWI GCNNNNNNNGC 2 cut(s) 196, 647
BstNI CCWGG 2 cut(s) 181, 233
BstSCI CCNGG 2 cut(s) 179, 231
BstSLI GKGCMC 1 cut(s) 524
BstUI CGCG 2 cut(s) 405, 529
BstV1I GCAGC 5 cut(s) 178, 211, 448, 601, 650
BstX2I RGATCY 1 cut(s) 322
BstYI RGATCY 1 cut(s) 322
BsuRI GGCC 2 cut(s) 231, 236
BtgI CCRYGG 1 cut(s) 494
BtsCI GGATG 3 cut(s) 310, 691, 751
BtsI GCAGTG 1 cut(s) 729
BtsIMutI CAGTG 2 cut(s) 627, 729
Cac8I GCNNGC 3 cut(s) 84, 133, 643
CfoI GCGC 2 cut(s) 166, 190
Cfr13I GGNCC 2 cut(s) 280, 677
CseI GACGC 2 cut(s) 151, 253
Csp6I GTAC 3 cut(s) 137, 239, 691
CviAII CATG 3 cut(s) 386, 472, 495
CviQI GTAC 3 cut(s) 137, 239, 691
DdeI CTNAG 1 cut(s) 631
DpnI GATC 3 cut(s) 324, 365, 543
DpnII GATC 3 cut(s) 322, 363, 541
DrdI GACNNNNNNGTC 1 cut(s) 218
DseDI GACNNNNNNGTC 1 cut(s) 218
EaeI YGGCCR 1 cut(s) 234
Eco130I CCWWGG 2 cut(s) 276, 494
Eco32I GATATC 1 cut(s) 409
Eco47I GGWCC 2 cut(s) 280, 677
Eco88I CYCGRG 2 cut(s) 416, 486
EcoO109I RGGNCCY 2 cut(s) 280, 677
EcoRII CCWGG 2 cut(s) 179, 231
EcoRV GATATC 1 cut(s) 409
EcoT14I CCWWGG 2 cut(s) 276, 494
ErhI CCWWGG 2 cut(s) 276, 494
FaeI CATG 3 cut(s) 389, 475, 498
FaqI GGGAC 3 cut(s) 221, 245, 745
FatI CATG 3 cut(s) 385, 471, 494
Fnu4HI GCNGC 5 cut(s) 167, 200, 437, 615, 639
FokI GGATG 3 cut(s) 317, 698, 758
Fsp4HI GCNGC 5 cut(s) 167, 200, 437, 615, 639
FspI TGCGCA 2 cut(s) 165, 189
GlaI GCGC 2 cut(s) 165, 189
GluI GCNGC 5 cut(s) 167, 200, 437, 615, 639
GsuI CTGGAG 1 cut(s) 163
HaeIII GGCC 2 cut(s) 231, 236
HgaI GACGC 2 cut(s) 151, 253
HhaI GCGC 2 cut(s) 166, 190
Hin1I GRCGYC 1 cut(s) 143
Hin1II CATG 3 cut(s) 389, 475, 498
Hin6I GCGC 2 cut(s) 164, 188
HinP1I GCGC 2 cut(s) 164, 188
HinfI GANTC 2 cut(s) 394, 739
HphI GGTGA 2 cut(s) 65, 107
Hpy188I TCNGA 2 cut(s) 157, 445
Hpy188III TCNNGA 2 cut(s) 251, 743
HpyAV CCTTC 2 cut(s) 450, 469
HpyCH4III ACNGT 1 cut(s) 513
HpyCH4V TGCA 2 cut(s) 617, 650
HpyF10VI GCNNNNNNNGC 2 cut(s) 196, 647
HpyF3I CTNAG 1 cut(s) 631
Hsp92I GRCGYC 1 cut(s) 143
Hsp92II CATG 3 cut(s) 389, 475, 498
HspAI GCGC 2 cut(s) 164, 188
Kzo9I GATC 3 cut(s) 322, 363, 541
Lsp1109I GCAGC 5 cut(s) 178, 211, 448, 601, 650
LweI GCATC 2 cut(s) 626, 676
MaeIII GTNAC 1 cut(s) 749
MalI GATC 3 cut(s) 324, 365, 543
MboI GATC 3 cut(s) 322, 363, 541
MboII GAAGA 3 cut(s) 266, 358, 690
MflI RGATCY 1 cut(s) 322
MhlI GDGCHC 1 cut(s) 524
MluCI AATT 4 cut(s) 286, 352, 359, 536
MmeI TCCRAC 2 cut(s) 135, 687
MseI TTAA 3 cut(s) 171, 285, 588
MslI CAYNNNNRTG 2 cut(s) 670, 700
MspA1I CMGCKG 2 cut(s) 614, 780
MspR9I CCNGG 2 cut(s) 181, 233
MvaI CCWGG 2 cut(s) 181, 233
MvnI CGCG 2 cut(s) 405, 529
MwoI GCNNNNNNNGC 2 cut(s) 196, 647
NcoI CCATGG 1 cut(s) 494
NdeII GATC 3 cut(s) 322, 363, 541
NlaIII CATG 3 cut(s) 389, 475, 498
NlaIV GGNNCC 4 cut(s) 324, 492, 523, 678
NsbI TGCGCA 2 cut(s) 165, 189
PaeR7I CTCGAG 1 cut(s) 416
PcsI WCGNNNNNNNCGW 1 cut(s) 247
PfeI GAWTC 2 cut(s) 394, 739
Pfl23II CGTACG 1 cut(s) 238
PflMI CCANNNNNTGG 1 cut(s) 767
PkrI GCNGC 5 cut(s) 168, 201, 438, 616, 640
PpuMI RGGWCCY 2 cut(s) 280, 677
Psp5II RGGWCCY 2 cut(s) 280, 677
Psp6I CCWGG 2 cut(s) 179, 231
PspGI CCWGG 2 cut(s) 179, 231
PspLI CGTACG 1 cut(s) 238
PspN4I GGNNCC 4 cut(s) 324, 492, 523, 678
PspPI GGNCC 2 cut(s) 280, 677
PspPPI RGGWCCY 2 cut(s) 280, 677
PspXI VCTCGAGB 1 cut(s) 416
PsuI RGATCY 1 cut(s) 322
PvuII CAGCTG 2 cut(s) 614, 780
RsaI GTAC 3 cut(s) 138, 240, 692
RsaNI GTAC 3 cut(s) 137, 239, 691
RseI CAYNNNNRTG 2 cut(s) 670, 700
SaqAI TTAA 3 cut(s) 171, 285, 588
SatI GCNGC 5 cut(s) 167, 200, 437, 615, 639
Sau3AI GATC 3 cut(s) 322, 363, 541
Sau96I GGNCC 2 cut(s) 280, 677
ScrFI CCNGG 2 cut(s) 181, 233
SduI GDGCHC 1 cut(s) 524
SfaNI GCATC 2 cut(s) 626, 676
Sfr274I CTCGAG 1 cut(s) 416
SinI GGWCC 2 cut(s) 280, 677
SlaI CTCGAG 1 cut(s) 416
SmiMI CAYNNNNRTG 2 cut(s) 670, 700
SmlI CTYRAG 1 cut(s) 416
SmoI CTYRAG 1 cut(s) 416
Sse9I AATT 4 cut(s) 286, 352, 359, 536
SsiI CCGC 3 cut(s) 403, 529, 683
StyD4I CCNGG 2 cut(s) 179, 231
StyI CCWWGG 2 cut(s) 276, 494
TaaI ACNGT 1 cut(s) 513
TaqI TCGA 4 cut(s) 417, 544, 573, 718
TasI AATT 4 cut(s) 286, 352, 359, 536
TfiI GAWTC 2 cut(s) 394, 739
Tru1I TTAA 3 cut(s) 171, 285, 588
Tru9I TTAA 3 cut(s) 171, 285, 588
TscAI CASTG 2 cut(s) 627, 729
TseI GCWGC 5 cut(s) 166, 199, 436, 614, 638
TspDTI ATGAA 3 cut(s) 374, 488, 576
TspGWI ACGGA 2 cut(s) 256, 335
TspRI CASTG 2 cut(s) 627, 729
Van91I CCANNNNNTGG 1 cut(s) 767
VpaK11BI GGWCC 2 cut(s) 280, 677
XhoI CTCGAG 1 cut(s) 416
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.