pycom10g23950

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr10
OG0016090
Physical Location & Seq
Reverse (-)
25894141 .. 25894494
354 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 354 bp
ATGACTGAACCCAAACCCGATACACCTCAAAACGTTCCTCCTTCCGAGATTAACAACACCGCCCATACTAGCAAACCCAGCAGGAGTTTCTCAGGCGAAAAGGTCCGCTTCCCGAACCCGCCCGACCCTCAAATCCCAGACGCGGCGACGCTTCGGGAGCAGTGGAAGTTCGCCATCAGGCAGTACAGCAAATGGTACTCTCACGCCTGGGGCACCGCCATTCTCGCTGGAGCTTCCTTTTTCGCCCTCGGTTGGTTCATCAAGGGCGGTAATCCTCTGCCCTCCGTCGGCCGCCACGACGATTCTCCTCCTCCTCCTCCTCCCCACGAATCCGAGGAAGCTCGACGCCCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

118

Amino Acids

13.01

Weight (kDa)

8.11

Isoelectric Point (pI)

60.11

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0016090)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G28540
fragaria_vesca FvH4_3g08330
malus_domestica MD10G1286700.v1.1
prunus_persica Prupe.4G055000_v2.0.a1
pyrus_communis pycom10g23950
rosa_chinensis RchiOBHm_Chr5g0009671
rosa_laevigata RLG00000031678
rosa_multiflora Rmu_sc0006311.1_g000002 Rmu_sc0038062.1_g000001
rosa_roxburghii Rroxscaffold_1G00066540
rosa_rugosa Rorug04G0444600
rosa_samantha Rh5BG071400 Rh5CG084100 Rh5DG072100
rosa_wichuraiana Rw5G007020

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 212
AccII CGCG 1 cut(s) 143
AciI CCGC 7 cut(s) 60, 106, 119, 143, 216, 267, 292
AclI AACGTT 1 cut(s) 33
AcoI YGGCCR 1 cut(s) 289
AcyI GRCGYC 1 cut(s) 346
AfaI GTAC 2 cut(s) 185, 197
AfiI CCNNNNNNNGG 3 cut(s) 142, 252, 287
AjnI CCWGG 1 cut(s) 206
AluBI AGCT 2 cut(s) 233, 341
AluI AGCT 2 cut(s) 233, 341
AoxI GGCC 1 cut(s) 289
AspS9I GGNCC 1 cut(s) 103
AvaII GGWCC 1 cut(s) 103
BaeGI GKGCMC 1 cut(s) 215
BanI GGYRCC 1 cut(s) 212
BccI CCATC 1 cut(s) 182
BciT130I CCWGG 1 cut(s) 208
BfaI CTAG 1 cut(s) 69
BisI GCNGC 2 cut(s) 144, 292
BlsI GCNGC 2 cut(s) 145, 293
Bme1390I CCNGG 1 cut(s) 208
Bme18I GGWCC 1 cut(s) 103
BmgT120I GGNCC 1 cut(s) 103
BmiI GGNNCC 1 cut(s) 214
BmrFI CCNGG 1 cut(s) 208
BpmI CTGGAG 1 cut(s) 249
BsaHI GRCGYC 1 cut(s) 346
BsaJI CCNNGG 3 cut(s) 207, 247, 333
Bsc4I CCNNNNNNNGG 3 cut(s) 142, 252, 287
BseBI CCWGG 1 cut(s) 208
BseDI CCNNGG 3 cut(s) 207, 247, 333
BseLI CCNNNNNNNGG 3 cut(s) 142, 252, 287
BseMII CTCAG 1 cut(s) 105
BseRI GAGGAG 5 cut(s) 297, 300, 303, 306, 309
BseSI GKGCMC 1 cut(s) 215
BseX3I CGGCCG 1 cut(s) 289
BseYI CCCAGC 1 cut(s) 77
Bsh1236I CGCG 1 cut(s) 143
Bsh1285I CGRYCG 1 cut(s) 292
BshFI GGCC 1 cut(s) 291
BshNI GGYRCC 1 cut(s) 212
BsiEI CGRYCG 1 cut(s) 292
BslI CCNNNNNNNGG 3 cut(s) 142, 252, 287
BsnI GGCC 1 cut(s) 291
Bsp1286I GDGCHC 1 cut(s) 215
BspACI CCGC 7 cut(s) 60, 106, 119, 143, 216, 267, 292
BspANI GGCC 1 cut(s) 291
BspCNI CTCAG 1 cut(s) 104
BspFNI CGCG 1 cut(s) 143
BspLI GGNNCC 1 cut(s) 214
BspT107I GGYRCC 1 cut(s) 212
BssECI CCNNGG 3 cut(s) 207, 247, 333
BssNI GRCGYC 1 cut(s) 346
Bst2UI CCWGG 1 cut(s) 208
BstACI GRCGYC 1 cut(s) 346
BstDEI CTNAG 1 cut(s) 91
BstFNI CGCG 1 cut(s) 143
BstMCI CGRYCG 1 cut(s) 292
BstMWI GCNNNNNNNGC 3 cut(s) 78, 157, 224
BstNI CCWGG 1 cut(s) 208
BstSCI CCNGG 1 cut(s) 206
BstSLI GKGCMC 1 cut(s) 215
BstUI CGCG 1 cut(s) 143
BstZI CGGCCG 1 cut(s) 289
BsuRI GGCC 1 cut(s) 291
BtsI GCAGTG 1 cut(s) 167
BtsIMutI CAGTG 1 cut(s) 167
Cfr13I GGNCC 1 cut(s) 103
CseI GACGC 2 cut(s) 149, 157
Csp6I GTAC 2 cut(s) 184, 196
CviAII CATG 1 cut(s) 351
CviJI RGCY 3 cut(s) 233, 291, 341
CviKI_1 RGCY 3 cut(s) 233, 291, 341
CviQI GTAC 2 cut(s) 184, 196
DdeI CTNAG 1 cut(s) 91
EaeI YGGCCR 1 cut(s) 289
EagI CGGCCG 1 cut(s) 289
EclXI CGGCCG 1 cut(s) 289
Eco47I GGWCC 1 cut(s) 103
Eco52I CGGCCG 1 cut(s) 289
EcoRII CCWGG 1 cut(s) 206
FaeI CATG 1 cut(s) 354
FaiI YATR 2 cut(s) 66, 352
FalI AAGNNNNNCTT 2 cut(s) 92, 124
FatI CATG 1 cut(s) 350
FauI CCCGC 1 cut(s) 126
Fnu4HI GCNGC 2 cut(s) 144, 292
Fsp4HI GCNGC 2 cut(s) 144, 292
FspBI CTAG 1 cut(s) 69
GluI GCNGC 2 cut(s) 144, 292
GsaI CCCAGC 1 cut(s) 81
GsuI CTGGAG 1 cut(s) 249
HaeIII GGCC 1 cut(s) 291
HgaI GACGC 2 cut(s) 149, 157
Hin1I GRCGYC 1 cut(s) 346
Hin1II CATG 1 cut(s) 354
HinfI GANTC 2 cut(s) 302, 329
Hpy188I TCNGA 2 cut(s) 46, 334
Hpy188III TCNNGA 2 cut(s) 112, 155
Hpy99I CGWCG 4 cut(s) 151, 290, 302, 348
HpyAV CCTTC 1 cut(s) 51
HpyCH4IV ACGT 1 cut(s) 33
HpyF10VI GCNNNNNNNGC 3 cut(s) 78, 157, 224
HpyF3I CTNAG 1 cut(s) 91
HpySE526I ACGT 1 cut(s) 33
Hsp92I GRCGYC 1 cut(s) 346
Hsp92II CATG 1 cut(s) 354
LmnI GCTCC 2 cut(s) 157, 230
LpnPI CCDG 8 cut(s) 67, 78, 91, 150, 163, 193, 213, 220
MaeI CTAG 1 cut(s) 69
MaeII ACGT 1 cut(s) 33
MhlI GDGCHC 1 cut(s) 215
MseI TTAA 1 cut(s) 51
MspR9I CCNGG 1 cut(s) 208
MvaI CCWGG 1 cut(s) 208
MvnI CGCG 1 cut(s) 143
MwoI GCNNNNNNNGC 3 cut(s) 78, 157, 224
NlaIII CATG 1 cut(s) 354
NlaIV GGNNCC 1 cut(s) 214
PcsI WCGNNNNNNNCGW 1 cut(s) 294
PfeI GAWTC 2 cut(s) 302, 329
PkrI GCNGC 2 cut(s) 145, 293
Psp1406I AACGTT 1 cut(s) 33
Psp6I CCWGG 1 cut(s) 206
PspFI CCCAGC 1 cut(s) 77
PspGI CCWGG 1 cut(s) 206
PspN4I GGNNCC 1 cut(s) 214
PspPI GGNCC 1 cut(s) 103
RsaI GTAC 2 cut(s) 185, 197
RsaNI GTAC 2 cut(s) 184, 196
SaqAI TTAA 1 cut(s) 51
SatI GCNGC 2 cut(s) 144, 292
Sau96I GGNCC 1 cut(s) 103
ScrFI CCNGG 1 cut(s) 208
SduI GDGCHC 1 cut(s) 215
SetI ASST 5 cut(s) 28, 36, 105, 235, 343
SinI GGWCC 1 cut(s) 103
SsiI CCGC 7 cut(s) 60, 106, 119, 143, 216, 267, 292
SspMI CTAG 1 cut(s) 69
StyD4I CCNGG 1 cut(s) 206
TaiI ACGT 1 cut(s) 36
TaqI TCGA 1 cut(s) 343
TatI WGTACW 1 cut(s) 183
TauI GCSGC 2 cut(s) 146, 294
TfiI GAWTC 2 cut(s) 302, 329
Tru1I TTAA 1 cut(s) 51
Tru9I TTAA 1 cut(s) 51
TscAI CASTG 1 cut(s) 167
TspDTI ATGAA 1 cut(s) 247
TspGWI ACGGA 1 cut(s) 274
TspRI CASTG 1 cut(s) 167
VpaK11BI GGWCC 1 cut(s) 103
XspI CTAG 1 cut(s) 69
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.