pycom10g24400

Squamosa promoter-binding-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr10
OG0011706
Physical Location & Seq
Reverse (-)
26264034 .. 26265500
1467 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 522 bp
ATGGATTCAGGCAGAGCTCATGGAAAGAGGACCATGTCGAAATACGAGGTGGAGGAGGAGGAGGAAGAGGAGGAGGAGGAAGAGGAAGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAAGAAAGTAGGAGTAGGAGACCATCAATTGTGTATGGTGAGGATGAGGGGAGAACAAGAGTGATGATGGTGAATAGTACTGCTGCTACTCCTACAGGGGGAAGATCTGGTACAGGAGGGTCTACGGCAGGGCCATGTTGTCAGGTAGATAATTGCACTGCTGACTTGAGTGATCTAAAGCAATACTACCGCCGCCACAAGGTCTGTGATGTTCATGCCAAGGCTTCGTCGATAGTTGTGGGTGGATTCCGGCAGCGTTTTTGCCAGCAATGTAGCAGGTTTCATAGCCTATCAGAGTTTGATGACAGTAAAAGGAGTTGTCGCAGGCGATTAGCTGGACACAATGAGCGGCGTCGGAAAACTTCATCGGAATACCATGGACATGGAGGCACGTCTAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SBP

Protein Analysis

174

Amino Acids

19.68

Weight (kDa)

5.14

Isoelectric Point (pI)

106.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SBP PF03110 87 - 160 1.4e-33 SBP domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011706)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G33810
fragaria_vesca FvH4_3g08880
malus_domestica MD05G1312300.v1.1 MD10G1291800.v1.1
prunus_persica Prupe.4G050400_v2.0.a1 Prupe.4G050400_v2.0.a1
pyrus_communis pycom05g28830 pycom10g24400
rosa_chinensis RchiOBHm_Chr5g0008871
rosa_laevigata RLG00000031612
rosa_multiflora Rmu_sc0004677.1_g000008
rosa_roxburghii Rroxscaffold_1G00067130 Rroxscaffold_1G00067750
rosa_rugosa Rorug04G0439900
rosa_samantha Rh5AG068500 Rh5BG065200 Rh5CG076400 Rh5DG064300
rosa_wichuraiana Rw5G006410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 387
AccBSI CCGCTC 1 cut(s) 469
AccI GTMKAC 1 cut(s) 242
AciI CCGC 3 cut(s) 310, 313, 469
AcyI GRCGYC 1 cut(s) 472
AfaI GTAC 2 cut(s) 199, 232
AfiI CCNNNNNNNGG 2 cut(s) 218, 319
AjiI CACGTC 1 cut(s) 513
AluBI AGCT 2 cut(s) 17, 455
AluI AGCT 2 cut(s) 17, 455
Alw21I GWGCWC 1 cut(s) 19
Alw26I GTCTC 1 cut(s) 133
AoxI GGCC 1 cut(s) 251
ApeKI GCWGC 2 cut(s) 203, 373
AspS9I GGNCC 2 cut(s) 30, 251
AsuHPI GGTGA 2 cut(s) 170, 202
AvaII GGWCC 1 cut(s) 30
BanII GRGCYC 1 cut(s) 19
BarI GAAGNNNNNNTAC 2 cut(s) 214, 246
Bbv12I GWGCWC 1 cut(s) 19
BbvI GCAGC 2 cut(s) 190, 385
BccI CCATC 2 cut(s) 151, 181
BceAI ACGGC 1 cut(s) 261
BcoDI GTCTC 1 cut(s) 133
BfmI CTRYAG 1 cut(s) 213
BfuAI ACCTGC 1 cut(s) 387
BglII AGATCT 1 cut(s) 224
BisI GCNGC 4 cut(s) 204, 313, 374, 470
BlsI GCNGC 4 cut(s) 205, 314, 375, 471
BmcAI AGTACT 1 cut(s) 199
Bme18I GGWCC 1 cut(s) 30
BmgBI CACGTC 1 cut(s) 513
BmgT120I GGNCC 2 cut(s) 30, 251
BpuEI CTTGAG 1 cut(s) 307
BsaHI GRCGYC 1 cut(s) 472
BsaI GGTCTC 1 cut(s) 133
BsaJI CCNNGG 2 cut(s) 339, 496
Bsc4I CCNNNNNNNGG 2 cut(s) 218, 319
Bse3DI GCAATG 1 cut(s) 395
BseDI CCNNGG 2 cut(s) 339, 496
BseGI GGATG 1 cut(s) 169
BseLI CCNNNNNNNGG 2 cut(s) 218, 319
BseMI GCAATG 1 cut(s) 395
BseXI GCAGC 2 cut(s) 190, 385
BshFI GGCC 1 cut(s) 253
BsiHKAI GWGCWC 1 cut(s) 19
BsiSI CCGG 1 cut(s) 370
BslI CCNNNNNNNGG 2 cut(s) 218, 319
BsmAI GTCTC 1 cut(s) 133
BsnI GGCC 1 cut(s) 253
Bso31I GGTCTC 1 cut(s) 133
Bsp1286I GDGCHC 1 cut(s) 19
Bsp143I GATC 2 cut(s) 224, 292
Bsp19I CCATGG 1 cut(s) 496
BspACI CCGC 3 cut(s) 310, 313, 469
BspANI GGCC 1 cut(s) 253
BspMI ACCTGC 1 cut(s) 387
BspTNI GGTCTC 1 cut(s) 133
BsrBI CCGCTC 1 cut(s) 469
BsrDI GCAATG 1 cut(s) 395
BssECI CCNNGG 2 cut(s) 339, 496
BssMI GATC 2 cut(s) 224, 292
BssNI GRCGYC 1 cut(s) 472
BssT1I CCWWGG 2 cut(s) 339, 496
Bst4CI ACNGT 1 cut(s) 428
Bst6I CTCTTC 3 cut(s) 60, 75, 81
BstACI GRCGYC 1 cut(s) 472
BstC8I GCNNGC 2 cut(s) 386, 446
BstDSI CCRYGG 1 cut(s) 496
BstF5I GGATG 1 cut(s) 169
BstKTI GATC 2 cut(s) 227, 295
BstMAI GTCTC 1 cut(s) 133
BstMBI GATC 2 cut(s) 224, 292
BstSFI CTRYAG 1 cut(s) 213
BstV1I GCAGC 2 cut(s) 190, 385
BstX2I RGATCY 1 cut(s) 224
BstXI CCANNNNNNTGG 1 cut(s) 503
BstYI RGATCY 1 cut(s) 224
BsuRI GGCC 1 cut(s) 253
BtgI CCRYGG 1 cut(s) 496
BtrI CACGTC 1 cut(s) 513
BtsCI GGATG 1 cut(s) 169
BtsI GCAGTG 1 cut(s) 276
BtsIMutI CAGTG 1 cut(s) 276
BveI ACCTGC 1 cut(s) 387
Cac8I GCNNGC 2 cut(s) 386, 446
Cfr13I GGNCC 2 cut(s) 30, 251
CseI GACGC 1 cut(s) 461
Csp6I GTAC 2 cut(s) 198, 231
CviAII CATG 6 cut(s) 20, 34, 255, 335, 497, 503
CviJI RGCY 5 cut(s) 17, 253, 344, 408, 455
CviKI_1 RGCY 5 cut(s) 17, 253, 344, 408, 455
CviQI GTAC 2 cut(s) 198, 231
DpnI GATC 2 cut(s) 226, 294
DpnII GATC 2 cut(s) 224, 292
Eam1104I CTCTTC 3 cut(s) 60, 75, 81
EarI CTCTTC 3 cut(s) 60, 75, 81
Ecl136II GAGCTC 1 cut(s) 17
Eco130I CCWWGG 2 cut(s) 339, 496
Eco24I GRGCYC 1 cut(s) 19
Eco31I GGTCTC 1 cut(s) 133
Eco47I GGWCC 1 cut(s) 30
Eco53kI GAGCTC 1 cut(s) 17
EcoICRI GAGCTC 1 cut(s) 17
EcoT14I CCWWGG 2 cut(s) 339, 496
EcoT38I GRGCYC 1 cut(s) 19
ErhI CCWWGG 2 cut(s) 339, 496
FaeI CATG 6 cut(s) 23, 37, 258, 338, 500, 506
FaiI YATR 8 cut(s) 21, 35, 156, 256, 336, 405, 498, 504
FatI CATG 6 cut(s) 19, 33, 254, 334, 496, 502
FblI GTMKAC 1 cut(s) 242
Fnu4HI GCNGC 4 cut(s) 204, 313, 374, 470
FokI GGATG 1 cut(s) 176
FriOI GRGCYC 1 cut(s) 19
Fsp4HI GCNGC 4 cut(s) 204, 313, 374, 470
GluI GCNGC 4 cut(s) 204, 313, 374, 470
HaeIII GGCC 1 cut(s) 253
HapII CCGG 1 cut(s) 370
HgaI GACGC 1 cut(s) 461
Hin1I GRCGYC 1 cut(s) 472
Hin1II CATG 6 cut(s) 23, 37, 258, 338, 500, 506
HinfI GANTC 2 cut(s) 5, 366
HpaII CCGG 1 cut(s) 370
HphI GGTGA 2 cut(s) 170, 202
Hpy166II GTNNAC 1 cut(s) 243
Hpy188I TCNGA 3 cut(s) 415, 477, 490
Hpy8I GTNNAC 1 cut(s) 243
Hpy99I CGWCG 2 cut(s) 352, 477
HpyCH4III ACNGT 1 cut(s) 428
HpyCH4IV ACGT 1 cut(s) 512
HpyCH4V TGCA 1 cut(s) 276
HpySE526I ACGT 1 cut(s) 512
Hsp92I GRCGYC 1 cut(s) 472
Hsp92II CATG 6 cut(s) 23, 37, 258, 338, 500, 506
Kzo9I GATC 2 cut(s) 224, 292
Lsp1109I GCAGC 2 cut(s) 190, 385
MaeII ACGT 1 cut(s) 512
MalI GATC 2 cut(s) 226, 294
MbiI CCGCTC 1 cut(s) 469
MboI GATC 2 cut(s) 224, 292
MboII GAAGA 5 cut(s) 77, 92, 98, 134, 234
MfeI CAATTG 1 cut(s) 147
MflI RGATCY 1 cut(s) 224
MhlI GDGCHC 1 cut(s) 19
MluCI AATT 3 cut(s) 147, 271, 517
MmeI TCCRAC 1 cut(s) 455
MseI TTAA 1 cut(s) 520
MslI CAYNNNNRTG 1 cut(s) 501
MspI CCGG 1 cut(s) 370
MunI CAATTG 1 cut(s) 147
NcoI CCATGG 1 cut(s) 496
NdeII GATC 2 cut(s) 224, 292
NlaIII CATG 6 cut(s) 23, 37, 258, 338, 500, 506
PfeI GAWTC 2 cut(s) 5, 366
PflFI GACNNNGTC 1 cut(s) 34
PkrI GCNGC 4 cut(s) 205, 314, 375, 471
Psp124BI GAGCTC 1 cut(s) 19
PspPI GGNCC 2 cut(s) 30, 251
PsuI RGATCY 1 cut(s) 224
PsyI GACNNNGTC 1 cut(s) 34
RsaI GTAC 2 cut(s) 199, 232
RsaNI GTAC 2 cut(s) 198, 231
RseI CAYNNNNRTG 1 cut(s) 501
SacI GAGCTC 1 cut(s) 19
SaqAI TTAA 1 cut(s) 520
SatI GCNGC 4 cut(s) 204, 313, 374, 470
Sau3AI GATC 2 cut(s) 224, 292
Sau96I GGNCC 2 cut(s) 30, 251
ScaI AGTACT 1 cut(s) 199
SduI GDGCHC 1 cut(s) 19
SetI ASST 7 cut(s) 19, 51, 267, 324, 401, 457, 515
SfcI CTRYAG 1 cut(s) 213
SinI GGWCC 1 cut(s) 30
SmiMI CAYNNNNRTG 1 cut(s) 501
SmlI CTYRAG 1 cut(s) 286
SmoI CTYRAG 1 cut(s) 286
Sse9I AATT 3 cut(s) 147, 271, 517
SsiI CCGC 3 cut(s) 310, 313, 469
SstI GAGCTC 1 cut(s) 19
StyI CCWWGG 2 cut(s) 339, 496
TaaI ACNGT 1 cut(s) 428
TaiI ACGT 1 cut(s) 515
TaqI TCGA 2 cut(s) 38, 350
TasI AATT 3 cut(s) 147, 271, 517
TatI WGTACW 1 cut(s) 197
TauI GCSGC 2 cut(s) 315, 472
TfiI GAWTC 2 cut(s) 5, 366
Tru1I TTAA 1 cut(s) 520
Tru9I TTAA 1 cut(s) 520
TscAI CASTG 1 cut(s) 283
TseI GCWGC 2 cut(s) 203, 373
TspDTI ATGAA 3 cut(s) 323, 392, 474
TspRI CASTG 1 cut(s) 283
Tth111I GACNNNGTC 1 cut(s) 34
VpaK11BI GGWCC 1 cut(s) 30
XmiI GTMKAC 1 cut(s) 242
ZrmI AGTACT 1 cut(s) 199
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.