pycom10g25120

Dof zinc finger protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr10
OG0017617
Physical Location & Seq
Forward (+)
26779747 .. 26780625
879 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 879 bp
ATGGGATTGAGTACTAAGCAGGTCAACAGTAACGGGATGGATTGGAGTCAGACAAGCTTGCTGCAAGTTCAGACGTTTCAGCTGCCAAAACCACCAACCGCCGTCAGGAGGCAGCAGCAACAAAATCAGCAGCAGCAATCTGAGCCGTTAAAGTGTCCGAGATGTGAATCAATGAACACAAAGTTTTGCTACTACAATAACTACAACAAGTCACAGCCAAGACACTTCTGCAGAGCTTGCAAGAGGCACTGGACAAAAGGTGGGACTCTCCGAAACGTCCCCGTTGGCGGCGTCCGCAAAAACAAGCGCCACAAAAAGTCATCAAACAATTCTCCCTCGGAAGCAGCTGCCACAACCGCCGCAAACAGTGCGACGATCGAGGATCATCATGAGCAAAAAACCACTGCGCAAGCTCTCTATCACGCGCTTATCGGTCCCCAATCTTCACTTCCGCAACAGAATTTGGACAACACAATCATATTTTCATCAGCAGGTTTAAGTAGTGCTACTACTTTGCCTTTTCTTCATCAAAGTAGAAACCTAATAAACTTTGATCCCTTCTCAAGCTCAATTAATACTACTACTTCAAGTTCCTTTGACACAAACTTCTCTTCAATCTCAACATCCTTGCAATCCTTAAACGTTTATAACTACGCTGGCACCGAAGATCAGTTCAAAGCCACCGTAGAGGAGCCAACCATTACAAGCATCATGCCAAATATTCTTCCTCAGCAACCCAATTGGAAAGCCCCTTCCACAAGTAACGCCGCCACGGATGTGTACTCGAATGACTGGAATTGGGAAGACATTGAAACCCTCGTTTCTACTGATCTCAACTTGCCTCATTGGGATGATTCTTCTGATCACATGAAACCGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-Dof

Protein Analysis

293

Amino Acids

32.66

Weight (kDa)

8.24

Isoelectric Point (pI)

68.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Zn_ribbon_Dof PF02701 49 - 103 8.3e-32 Dof domain, zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017617)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g04730
malus_domestica MD05G1318600.v1.1 MD10G1297900.v1.1
prunus_persica Prupe.4G042500_v2.0.a1
pyrus_communis pycom05g29470 pycom10g25120
rosa_chinensis RchiOBHm_Chr5g0007751
rosa_laevigata RLG00000031484
rosa_samantha Rh5BG055200 Rh5CG065000 Rh5DG054200
rosa_wichuraiana Rw5G006130

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 648
Acc16I TGCGCA 1 cut(s) 408
Acc36I ACCTGC 2 cut(s) 10, 482
AccB1I GGYRCC 1 cut(s) 659
AccII CGCG 1 cut(s) 425
AciI CCGC 7 cut(s) 99, 288, 295, 357, 360, 452, 768
AclI AACGTT 1 cut(s) 642
AclWI GGATC 2 cut(s) 390, 548
AcsI RAATTY 1 cut(s) 460
AcyI GRCGYC 1 cut(s) 291
AfaI GTAC 2 cut(s) 13, 782
AfiI CCNNNNNNNGG 3 cut(s) 105, 108, 287
AgsI TTSAA 4 cut(s) 588, 615, 676, 812
AjuI GAANNNNNNNTTGG 2 cut(s) 432, 464
AleI CACNNNNGTG 1 cut(s) 776
AluBI AGCT 6 cut(s) 57, 82, 236, 347, 413, 567
AluI AGCT 6 cut(s) 57, 82, 236, 347, 413, 567
AlwI GGATC 2 cut(s) 390, 548
ApeKI GCWGC 8 cut(s) 61, 82, 112, 115, 130, 133, 344, 347
ApoI RAATTY 1 cut(s) 460
AseI ATTAAT 1 cut(s) 573
AspLEI GCGC 3 cut(s) 309, 409, 427
AspS9I GGNCC 1 cut(s) 434
AvaII GGWCC 1 cut(s) 434
BanI GGYRCC 1 cut(s) 659
BbsI GAAGAC 1 cut(s) 810
BbvCI CCTCAGC 1 cut(s) 729
BbvI GCAGC 8 cut(s) 48, 69, 124, 127, 142, 145, 334, 356
BccI CCATC 1 cut(s) 31
BceAI ACGGC 2 cut(s) 86, 130
BclI TGATCA 1 cut(s) 862
BfmI CTRYAG 1 cut(s) 229
BfoI RGCGCY 1 cut(s) 310
BfuAI ACCTGC 2 cut(s) 10, 482
BmcAI AGTACT 1 cut(s) 13
Bme18I GGWCC 1 cut(s) 434
BmgT120I GGNCC 1 cut(s) 434
BmiI GGNNCC 3 cut(s) 436, 661, 693
BmsI GCATC 1 cut(s) 717
BpiI GAAGAC 1 cut(s) 810
Bpu10I CCTNAGC 1 cut(s) 729
BpuEI CTTGAG 1 cut(s) 547
BsaBI GATNNNNATC 1 cut(s) 166
BsaHI GRCGYC 1 cut(s) 291
BsaJI CCNNGG 2 cut(s) 336, 771
Bsc4I CCNNNNNNNGG 3 cut(s) 105, 108, 287
Bse1I ACTGG 2 cut(s) 254, 797
Bse8I GATNNNNATC 1 cut(s) 166
BseDI CCNNGG 2 cut(s) 336, 771
BseGI GGATG 4 cut(s) 42, 623, 781, 856
BseJI GATNNNNATC 1 cut(s) 166
BseLI CCNNNNNNNGG 3 cut(s) 105, 108, 287
BseMII CTCAG 2 cut(s) 132, 743
BseNI ACTGG 2 cut(s) 254, 797
BseRI GAGGAG 1 cut(s) 704
BseXI GCAGC 8 cut(s) 48, 69, 124, 127, 142, 145, 334, 356
Bsh1236I CGCG 1 cut(s) 425
Bsh1285I CGRYCG 1 cut(s) 378
BshNI GGYRCC 1 cut(s) 659
BsiEI CGRYCG 1 cut(s) 378
BslFI GGGAC 3 cut(s) 263, 277, 420
BslI CCNNNNNNNGG 3 cut(s) 105, 108, 287
BsmFI GGGAC 3 cut(s) 263, 277, 420
Bsp143I GATC 6 cut(s) 375, 382, 553, 667, 829, 862
BspACI CCGC 7 cut(s) 99, 288, 295, 357, 360, 452, 768
BspCNI CTCAG 2 cut(s) 133, 742
BspFNI CGCG 1 cut(s) 425
BspHI TCATGA 1 cut(s) 388
BspLI GGNNCC 3 cut(s) 436, 661, 693
BspMAI CTGCAG 1 cut(s) 233
BspMI ACCTGC 2 cut(s) 10, 482
BspPI GGATC 2 cut(s) 390, 548
BspT107I GGYRCC 1 cut(s) 659
BsrI ACTGG 2 cut(s) 254, 797
BssECI CCNNGG 2 cut(s) 336, 771
BssMI GATC 6 cut(s) 375, 382, 553, 667, 829, 862
BssNI GRCGYC 1 cut(s) 291
Bst4CI ACNGT 4 cut(s) 29, 368, 685, 876
Bst6I CTCTTC 1 cut(s) 616
BstACI GRCGYC 1 cut(s) 291
BstAPI GCANNNNNTGC 2 cut(s) 237, 368
BstC8I GCNNGC 4 cut(s) 59, 238, 411, 658
BstDEI CTNAG 3 cut(s) 15, 141, 729
BstDSI CCRYGG 1 cut(s) 771
BstF5I GGATG 4 cut(s) 42, 623, 781, 856
BstFNI CGCG 1 cut(s) 425
BstH2I RGCGCY 1 cut(s) 310
BstHHI GCGC 3 cut(s) 309, 409, 427
BstKTI GATC 6 cut(s) 378, 385, 556, 670, 832, 865
BstMBI GATC 6 cut(s) 375, 382, 553, 667, 829, 862
BstMCI CGRYCG 1 cut(s) 378
BstMWI GCNNNNNNNGC 5 cut(s) 142, 237, 294, 356, 368
BstSFI CTRYAG 1 cut(s) 229
BstUI CGCG 1 cut(s) 425
BstV1I GCAGC 8 cut(s) 48, 69, 124, 127, 142, 145, 334, 356
BstV2I GAAGAC 1 cut(s) 810
BtgI CCRYGG 1 cut(s) 771
BtsCI GGATG 4 cut(s) 42, 623, 781, 856
BtsI GCAGTG 1 cut(s) 402
BtsIMutI CAGTG 3 cut(s) 247, 373, 402
BveI ACCTGC 2 cut(s) 10, 482
Cac8I GCNNGC 4 cut(s) 59, 238, 411, 658
CciI TCATGA 1 cut(s) 388
CfoI GCGC 3 cut(s) 309, 409, 427
Cfr13I GGNCC 1 cut(s) 434
CseI GACGC 1 cut(s) 280
Csp6I GTAC 2 cut(s) 12, 781
CviAII CATG 3 cut(s) 389, 712, 868
CviQI GTAC 2 cut(s) 12, 781
DdeI CTNAG 3 cut(s) 15, 141, 729
DpnI GATC 6 cut(s) 377, 384, 555, 669, 831, 864
DpnII GATC 6 cut(s) 375, 382, 553, 667, 829, 862
Eam1104I CTCTTC 1 cut(s) 616
EarI CTCTTC 1 cut(s) 616
Eco47I GGWCC 1 cut(s) 434
FaeI CATG 3 cut(s) 392, 715, 871
FaiI YATR 5 cut(s) 390, 479, 648, 713, 869
FaqI GGGAC 3 cut(s) 263, 277, 420
FatI CATG 3 cut(s) 388, 711, 867
FbaI TGATCA 1 cut(s) 862
FokI GGATG 4 cut(s) 49, 610, 788, 863
FspI TGCGCA 1 cut(s) 408
GlaI GCGC 3 cut(s) 308, 408, 426
HaeII RGCGCY 1 cut(s) 310
HgaI GACGC 1 cut(s) 280
HhaI GCGC 3 cut(s) 309, 409, 427
Hin1I GRCGYC 1 cut(s) 291
Hin1II CATG 3 cut(s) 392, 715, 871
Hin6I GCGC 3 cut(s) 307, 407, 425
HinP1I GCGC 3 cut(s) 307, 407, 425
HincII GTYRAC 1 cut(s) 25
HindII GTYRAC 1 cut(s) 25
HindIII AAGCTT 1 cut(s) 55
HinfI GANTC 4 cut(s) 46, 167, 265, 854
Hpy166II GTNNAC 2 cut(s) 25, 781
Hpy188I TCNGA 7 cut(s) 51, 72, 142, 159, 272, 340, 862
Hpy188III TCNNGA 2 cut(s) 106, 389
Hpy8I GTNNAC 2 cut(s) 25, 781
Hpy99I CGWCG 1 cut(s) 376
HpyAV CCTTC 2 cut(s) 568, 762
HpyCH4III ACNGT 4 cut(s) 29, 368, 685, 876
HpyCH4IV ACGT 3 cut(s) 74, 276, 642
HpyCH4V TGCA 4 cut(s) 64, 231, 240, 631
HpyF10VI GCNNNNNNNGC 5 cut(s) 142, 237, 294, 356, 368
HpyF3I CTNAG 3 cut(s) 15, 141, 729
HpySE526I ACGT 3 cut(s) 74, 276, 642
Hsp92I GRCGYC 1 cut(s) 291
Hsp92II CATG 3 cut(s) 392, 715, 871
HspAI GCGC 3 cut(s) 307, 407, 425
Ksp22I TGATCA 1 cut(s) 862
Kzo9I GATC 6 cut(s) 375, 382, 553, 667, 829, 862
LmnI GCTCC 1 cut(s) 691
LpnPI CCDG 6 cut(s) 5, 91, 235, 477, 642, 778
Lsp1109I GCAGC 8 cut(s) 48, 69, 124, 127, 142, 145, 334, 356
LweI GCATC 1 cut(s) 717
MaeII ACGT 3 cut(s) 74, 276, 642
MaeIII GTNAC 3 cut(s) 29, 210, 761
MalI GATC 6 cut(s) 377, 384, 555, 669, 831, 864
MboI GATC 6 cut(s) 375, 382, 553, 667, 829, 862
MboII GAAGA 7 cut(s) 435, 515, 603, 677, 716, 815, 849
MfeI CAATTG 1 cut(s) 739
MluCI AATT 5 cut(s) 328, 460, 570, 739, 796
MlyI GAGTC 2 cut(s) 55, 259
MnlI CCTC 8 cut(s) 102, 237, 346, 373, 682, 738, 827, 852
MseI TTAA 4 cut(s) 149, 497, 573, 638
MslI CAYNNNNRTG 2 cut(s) 776, 849
MspA1I CMGCKG 2 cut(s) 82, 347
MunI CAATTG 1 cut(s) 739
MvnI CGCG 1 cut(s) 425
MwoI GCNNNNNNNGC 5 cut(s) 142, 237, 294, 356, 368
NdeII GATC 6 cut(s) 375, 382, 553, 667, 829, 862
NlaIII CATG 3 cut(s) 392, 715, 871
NlaIV GGNNCC 3 cut(s) 436, 661, 693
NmuCI GTSAC 1 cut(s) 210
NsbI TGCGCA 1 cut(s) 408
OliI CACNNNNGTG 1 cut(s) 776
PagI TCATGA 1 cut(s) 388
PcsI WCGNNNNNNNCGW 1 cut(s) 660
PfeI GAWTC 2 cut(s) 167, 854
Ple19I CGATCG 1 cut(s) 378
PleI GAGTC 2 cut(s) 54, 259
PpsI GAGTC 2 cut(s) 54, 259
PshBI ATTAAT 1 cut(s) 573
PsiI TTATAA 1 cut(s) 648
Psp1406I AACGTT 1 cut(s) 642
PspN4I GGNNCC 3 cut(s) 436, 661, 693
PspPI GGNCC 1 cut(s) 434
PstI CTGCAG 1 cut(s) 233
PvuI CGATCG 1 cut(s) 378
PvuII CAGCTG 2 cut(s) 82, 347
RsaI GTAC 2 cut(s) 13, 782
RsaNI GTAC 2 cut(s) 12, 781
RseI CAYNNNNRTG 2 cut(s) 776, 849
SaqAI TTAA 4 cut(s) 149, 497, 573, 638
Sau3AI GATC 6 cut(s) 375, 382, 553, 667, 829, 862
Sau96I GGNCC 1 cut(s) 434
ScaI AGTACT 1 cut(s) 13
SchI GAGTC 2 cut(s) 55, 259
SfaNI GCATC 1 cut(s) 717
SfcI CTRYAG 1 cut(s) 229
SinI GGWCC 1 cut(s) 434
SmiMI CAYNNNNRTG 2 cut(s) 776, 849
SmlI CTYRAG 1 cut(s) 562
SmoI CTYRAG 1 cut(s) 562
Sse9I AATT 5 cut(s) 328, 460, 570, 739, 796
SsiI CCGC 7 cut(s) 99, 288, 295, 357, 360, 452, 768
SspI AATATT 1 cut(s) 721
TaaI ACNGT 4 cut(s) 29, 368, 685, 876
TaiI ACGT 3 cut(s) 77, 279, 645
TaqI TCGA 2 cut(s) 378, 785
TaqII GACCGA 1 cut(s) 422
TasI AATT 5 cut(s) 328, 460, 570, 739, 796
TatI WGTACW 2 cut(s) 11, 780
TauI GCSGC 3 cut(s) 291, 362, 770
TfiI GAWTC 2 cut(s) 167, 854
Tru1I TTAA 4 cut(s) 149, 497, 573, 638
Tru9I TTAA 4 cut(s) 149, 497, 573, 638
TscAI CASTG 3 cut(s) 254, 373, 409
TseFI GTSAC 1 cut(s) 210
TseI GCWGC 8 cut(s) 61, 82, 112, 115, 130, 133, 344, 347
Tsp45I GTSAC 1 cut(s) 210
TspDTI ATGAA 3 cut(s) 188, 474, 515
TspGWI ACGGA 1 cut(s) 788
TspRI CASTG 3 cut(s) 254, 373, 409
VpaK11BI GGWCC 1 cut(s) 434
VspI ATTAAT 1 cut(s) 573
XapI RAATTY 1 cut(s) 460
ZrmI AGTACT 1 cut(s) 13
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.