Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0007917

Physical Location & Seq

Genomic Coordinates Forward (+)

27346218 .. 27349900

Gene Structure 3683 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2607 bp

ATGAATGCCTGCACTTCTCTGAGTTCATCAATGGCAGTCGATAGAAAAAACCCAGGTAGCAGAATTTGTAACTTCTCATTCCTTAATGTTTTCTGCTGGTCTCTCCCTCTGTTTTGCTCTGCGTCGAGTTCGATTTCGCAGGGGCAATCTATAAAAGATGGAGAGAGACTGATCTCGGATGGCGAAATATTCGAACTGGGTTTCTTCAGTCCGGGGAATTCATCGTCCCGGTACGTCGGAATTCGGTATTACAAAATTTCGGACCCGTCAGTGATCTGGGTTGCAAACAGAGAAAACCCAATTTCTGATAAATCTGGAGTCTTGGAATTTAAAAGCGATGGAAATCTGGTTGTTTTGGATGGAAATGGCACCGCTGTTTGGTCTACTAACGCTTCAGCCGCCACTAACTCGACGGCGAGACTCCATGACGAAGGAAGTCTTATTCTTTCCCGCCGCGGCGATGCCAACGTGGTCTATTGGCAGAGCTTTGACGATGCAGCGGACACATTTTTGCCGGGAATGAAAGTTGAGGTGAGTGATGAGATCGGAGAGAATCGGTTTCTGAGTTCGTGGAAGTCGGAAAGTGACCCTTCGGCCGGAGGGTACTCAATGGGGGTTGATCCTCGAGGATCGCCGCAGATTGTGATATGGGAAGGATCAGAACGGCGGTGGAGAAGCGGGCATTGGAACAAGCAGATATTCATTGGACTTCCGAATATGCCAACTACTTATGCATCTGGTTTTAAGCTTAGTGATGAGAATGGGAAAGCATATTTTACATACAGACCGTGGAATCCTTCAGATAAGTTGAGGTTTCGGATAAGGTGGGACGGGTACGAAGAGCAGCTGCAGTGGGCGGAAGAGAAGAGCCAGTGGGAAGTGATACAATCTCGGCCTAACAAGACCAACCAATGTGAGTTTTACAACAAATGTGGAAGGTTTGGGGTGTGTAGTGCATCTGATGAATCGAGTTCAATTTGCCGTTGTATGCATGGATTTCAACCGAGGAATTTGGATCAATGGACTGGGGGAAATTGGTCGGAAGGGTGTTCTAGGAAAACCCCTTTGCAGTGTCAGAGAAATAGTTCTAATGGAACGGTGGCAAGTGATGAAACAGATGGATTTGTAGCGATAAGGTGTGCCAAGTTGCCGGATTTTGCAGACTTGGTTGTTGCAGTTCCAGGGGAGAGCTGCGAGGAGAAATGTCTCGAGAATTGTGCTTGTACTGCATATGCAATGGTTCAAGGGATTGGTTGTATGATGTGGACCGAAGACTTGATTGATGTCCAACAATTTACAAAGGGAGGAAACATGTTGCATATACGTGTTGCGCATTCAGATTTAGGTAGCAAGCACAAATTGTCCACCGCTGTGATAGCAGTAATTTCTGTAGCGGGAGCATTGTTCGCTGTCATCATCCTATTGCTTTTGTGGAAGTTTAAGGCAAAATTGAAAGTGTTGCCCACCGCTTCTTCAATTTCATGGTTAAGGGGAGGTGATACATCAACGCTCGATGCTGGAAAGAGAGAAGAATTTTCAACAGATGCTTCAGGATCAGTAGATGTTTATTCAGAAGGGAATCAAGTAAATAGATGCGAATTACGGCTGTTAAATTTGAGTTGTGTAGCAGCTGCTACGAACAACTTTTCTGAAGAAAATAAGCTTGGGAAGGGGGGATTTGGTACTGTCTACAAGGGTAGCCTTCCAGGGCTACCACAAATAGCTGTAAAAAGACTTTCGAGAAGGTCTACTCAAGGATTGGAGGAGTTCAAGAACGAGATTAGTCTGATTGCTAAGTTACAACACAGGAATCTCGTGAGACTATTGGGCTGCTGCATTGAAGGAGAAGAAAAGATGCTGGTTTATGAATACATGCCAAACAAAAGCTTGGATTTCTTTCTTTTCAATCCAGCCAACCAATCACTATTAGATTGGAGAAAACGCTTCACGATTATTGAAGGGATTGCACGAGGGCTCCTTTATCTCCATCGTGATTCAAGACTTAGAATTATTCATCGGGACCTAAAAGCTAGCAACATTTTGCTGGATGAAGATATGATTCCCAAAATTTCAGACTTCGGTATGGCAAGAATATTCGGGGGTAATGAAAATGAAGAAAATACAGCCCGAGTTGTTGGCACATACGGTTATATGTCACCTGAATATGCAATGGAAGGTCTGTTTTCAGTAAAGTCAGATGTCTTTAGCTTTGGTGTATTGCTGCTAGAGATTGTGAGTGGCCGAAGGAACACAAGTTTGCGATCAACGGAACACTTAAGCCTTATTGGATATGCGTGGCATCTTTGGAACGAGAATCGAGCAGTGGACCTCATTGATCCTTCTATCGCAGAAACATGTTCCCCGAATGAAACTGAATTATTGAGATGCATACATGTAGCGTTGCTGTGTGTGCAAGACTATGCAGCTAGTAGACCAAGCATGCCGGCCGTGGTGTTAATGCTGGAAAGTGAAGCCGCAAATCTTCAGTTACCAGTACAACCTATGTTTACTTCAATTAGGAGACACGTGGATACAAATTTTGGTACAGAAGGCCAGGATGTAGCATCCTCGAACAATGTAACGATTACAATGTTGGAAGGGAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

B_lectin DUF3403 PAN_2 Pkinase_Tyr S_locus_glycop

Protein Analysis

869

Amino Acids

96.43

Weight (kDa)

5.8

Isoelectric Point (pI)

47.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
B_lectin	PF01453	91 - 192	1.1e-32	D-mannose binding lectin
S_locus_glycop	PF00954	224 - 336	5.4e-26	S-locus glycoprotein domain
PAN_2	PF08276	370 - 429	3e-16	PAN-like domain
Pkinase	PF00069	550 - 752	7.3e-42	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	552 - 764	9.8e-47	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0007917)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G61610 AT1G61610 AT4G21390 AT4G21390
fragaria_vesca	FvH4_3g03590 FvH4_3g03590 FvH4_3g03590 FvH4_3g03590 FvH4_3g03590
malus_domestica	MD05G1329600.v1.1 MD10G1306600.v1.1
prunus_persica	Prupe.4G033200_v2.0.a1
pyrus_communis	pycom05g30270 pycom10g25870
rosa_chinensis	RchiOBHm_Chr5g0005641
rosa_laevigata	RLG00000031314
rosa_multiflora	Rmu_co8421279.1_g000001
rosa_roxburghii	Rroxscaffold_1G00070190
rosa_rugosa	Rorug04G0417000
rosa_samantha	Rh5AG044400 Rh5BG043200 Rh5CG052000 Rh5DG043200
rosa_wichuraiana	Rw5G004470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	624
Acc16I	TGCGCA	1 cut(s)	1332
AccB1I	GGYRCC	1 cut(s)	368
AccI	GTMKAC	4 cut(s)	383, 1689, 1748, 2431
AccII	CGCG	1 cut(s)	456
AclWI	GGATC	6 cut(s)	614, 637, 664, 1023, 1561, 2330
AcoI	YGGCCR	3 cut(s)	594, 2239, 2445
AcuI	CTGAAG	6 cut(s)	190, 378, 783, 1533, 1671, 2468
AcvI	CACGTG	1 cut(s)	2527
AfaI	GTAC	7 cut(s)	233, 605, 836, 1225, 1684, 2496, 2545
AfiI	CCNNNNNNNGG	2 cut(s)	378, 596
AflII	CTTAAG	1 cut(s)	2275
AflIII	ACRYGT	5 cut(s)	1311, 1324, 2354, 2392, 2524
AjnI	CCWGG	4 cut(s)	52, 1180, 1705, 2553
AjuI	GAANNNNNNNTTGG	4 cut(s)	667, 699, 1647, 1679
AleI	CACNNNNGTG	1 cut(s)	1370
Alw26I	GTCTC	6 cut(s)	105, 160, 412, 1211, 1813, 2515
AlwI	GGATC	6 cut(s)	614, 637, 664, 1023, 1561, 2330
Ama87I	CYCGRG	3 cut(s)	624, 1208, 2127
AoxI	GGCC	5 cut(s)	594, 893, 2239, 2445, 2551
Asp700I	GAANNNNTTC	1 cut(s)	1084
AspLEI	GCGC	1 cut(s)	1333
AspS9I	GGNCC	4 cut(s)	262, 1266, 2020, 2326
AsuC2I	CCSGG	3 cut(s)	213, 229, 516
AsuHPI	GGTGA	3 cut(s)	544, 1508, 2148
AsuII	TTCGAA	1 cut(s)	192
AsuNHI	GCTAGC	1 cut(s)	2030
AvaI	CYCGRG	3 cut(s)	624, 1208, 2127
AvaII	GGWCC	4 cut(s)	262, 1266, 2020, 2326
BanI	GGYRCC	1 cut(s)	368
BanII	GRGCYC	1 cut(s)	1977
BauI	CACGAG	2 cut(s)	1814, 1968
BbrPI	CACGTG	1 cut(s)	2527
BbsI	GAAGAC	1 cut(s)	1278
BccI	CCATC	6 cut(s)	152, 173, 332, 353, 1112, 1995
BceAI	ACGGC	5 cut(s)	429, 680, 966, 1619, 2432
BcgI	CGANNNNNNTGC	2 cut(s)	1199, 1233
BciT130I	CCWGG	4 cut(s)	54, 1182, 1707, 2555
BciVI	GTATCC	1 cut(s)	2524
BcnI	CCSGG	3 cut(s)	213, 229, 516
BcoDI	GTCTC	6 cut(s)	105, 160, 412, 1211, 1813, 2515
BfaI	CTAG	4 cut(s)	1053, 2031, 2225, 2427
BfmI	CTRYAG	2 cut(s)	848, 1389
BfrI	CTTAAG	1 cut(s)	2275
BfuI	GTATCC	1 cut(s)	2524
Bme1390I	CCNGG	7 cut(s)	54, 213, 229, 516, 1182, 1707, 2555
Bme18I	GGWCC	4 cut(s)	262, 1266, 2020, 2326
BmeT110I	CYCGRG	3 cut(s)	624, 1208, 2127
BmgT120I	GGNCC	4 cut(s)	262, 1266, 2020, 2326
BmiI	GGNNCC	4 cut(s)	264, 370, 1976, 2021
BmrFI	CCNGG	7 cut(s)	54, 213, 229, 516, 1182, 1707, 2555
BmrI	ACTGGG	2 cut(s)	206, 1035
BmtI	GCTAGC	1 cut(s)	2034
BmuI	ACTGGG	2 cut(s)	206, 1035
BpiI	GAAGAC	1 cut(s)	1278
BpmI	CTGGAG	1 cut(s)	336
Bpu14I	TTCGAA	1 cut(s)	192
BpuEI	CTTGAG	1 cut(s)	1737
BpuMI	CCSGG	3 cut(s)	213, 229, 516
BsaAI	YACGTR	2 cut(s)	1325, 2527
BsaBI	GATNNNNATC	1 cut(s)	342
BsaI	GGTCTC	1 cut(s)	105
BsaJI	CCNNGG	8 cut(s)	52, 212, 454, 788, 1004, 1181, 1706, 2448
BsaXI	ACNNNNNCTCC	2 cut(s)	1959, 1989
Bsc4I	CCNNNNNNNGG	2 cut(s)	378, 596
Bse118I	RCCGGY	1 cut(s)	2443
Bse1I	ACTGG	4 cut(s)	201, 871, 1030, 2492
Bse3DI	GCAATG	2 cut(s)	1242, 2175
Bse8I	GATNNNNATC	1 cut(s)	342
BseBI	CCWGG	4 cut(s)	54, 1182, 1707, 2555
BseDI	CCNNGG	8 cut(s)	52, 212, 454, 788, 1004, 1181, 1706, 2448
BseGI	GGATG	6 cut(s)	184, 364, 1416, 2053, 2563, 2564
BseJI	GATNNNNATC	1 cut(s)	342
BseLI	CCNNNNNNNGG	2 cut(s)	378, 596
BseMI	GCAATG	2 cut(s)	1242, 2175
BseMII	CTCAG	2 cut(s)	11, 554
BseNI	ACTGG	4 cut(s)	201, 871, 1030, 2492
BseRI	GAGGAG	2 cut(s)	1211, 1778
BseX3I	CGGCCG	2 cut(s)	594, 2445
Bsh1236I	CGCG	1 cut(s)	456
Bsh1285I	CGRYCG	2 cut(s)	597, 2448
BshFI	GGCC	5 cut(s)	596, 895, 2241, 2447, 2553
BshNI	GGYRCC	1 cut(s)	368
BsiEI	CGRYCG	2 cut(s)	597, 2448
BsiHKCI	CYCGRG	3 cut(s)	624, 1208, 2127
BsiSI	CCGG	6 cut(s)	212, 229, 515, 597, 1151, 2444
BslFI	GGGAC	3 cut(s)	211, 842, 2033
BslI	CCNNNNNNNGG	2 cut(s)	378, 596
BsmAI	GTCTC	6 cut(s)	105, 160, 412, 1211, 1813, 2515
BsmFI	GGGAC	3 cut(s)	211, 842, 2033
BsmI	GAATGC	2 cut(s)	10, 1333
BsnI	GGCC	5 cut(s)	596, 895, 2241, 2447, 2553
Bso31I	GGTCTC	1 cut(s)	105
BsoBI	CYCGRG	3 cut(s)	624, 1208, 2127
Bsp119I	TTCGAA	1 cut(s)	192
Bsp1286I	GDGCHC	1 cut(s)	1977
BspANI	GGCC	5 cut(s)	596, 895, 2241, 2447, 2553
BspCNI	CTCAG	2 cut(s)	12, 555
BspFNI	CGCG	1 cut(s)	456
BspLI	GGNNCC	4 cut(s)	264, 370, 1976, 2021
BspMAI	CTGCAG	1 cut(s)	852
BspOI	GCTAGC	1 cut(s)	2034
BspPI	GGATC	6 cut(s)	614, 637, 664, 1023, 1561, 2330
BspQI	GCTCTTC	2 cut(s)	834, 860
BspT104I	TTCGAA	1 cut(s)	192
BspT107I	GGYRCC	1 cut(s)	368
BspTI	CTTAAG	1 cut(s)	2275
BspTNI	GGTCTC	1 cut(s)	105
BsrDI	GCAATG	2 cut(s)	1242, 2175
BsrFI	RCCGGY	1 cut(s)	2443
BsrI	ACTGG	4 cut(s)	201, 871, 1030, 2492
BssAI	RCCGGY	1 cut(s)	2443
BssECI	CCNNGG	8 cut(s)	52, 212, 454, 788, 1004, 1181, 1706, 2448
BssSI	CACGAG	2 cut(s)	1814, 1968
Bst2BI	CACGAG	2 cut(s)	1814, 1968
Bst2UI	CCWGG	4 cut(s)	54, 1182, 1707, 2555
Bst4CI	ACNGT	4 cut(s)	789, 1099, 1687, 2147
Bst6I	CTCTTC	3 cut(s)	834, 855, 860
BstAFI	CTTAAG	1 cut(s)	2275
BstBAI	YACGTR	2 cut(s)	1325, 2527
BstBI	TTCGAA	1 cut(s)	192
BstC8I	GCNNGC	6 cut(s)	10, 680, 1352, 2032, 2441, 2445
BstDEI	CTNAG	5 cut(s)	20, 563, 749, 1794, 2003
BstDSI	CCRYGG	3 cut(s)	454, 788, 2448
BstF5I	GGATG	6 cut(s)	184, 364, 1416, 2053, 2563, 2564
BstFNI	CGCG	1 cut(s)	456
BstHHI	GCGC	1 cut(s)	1333
BstMAI	GTCTC	6 cut(s)	105, 160, 412, 1211, 1813, 2515
BstMCI	CGRYCG	2 cut(s)	597, 2448
BstMWI	GCNNNNNNNGC	5 cut(s)	398, 1226, 1376, 1406, 2410
BstNI	CCWGG	4 cut(s)	54, 1182, 1707, 2555
BstNSI	RCATGY	5 cut(s)	1315, 1876, 2358, 2396, 2443
BstSCI	CCNGG	7 cut(s)	52, 211, 227, 514, 1180, 1705, 2553
BstSFI	CTRYAG	2 cut(s)	848, 1389
BstUI	CGCG	1 cut(s)	456
BstV2I	GAAGAC	1 cut(s)	1278
BstZI	CGGCCG	2 cut(s)	594, 2445
BsuI	GTATCC	1 cut(s)	2524
BsuRI	GGCC	5 cut(s)	596, 895, 2241, 2447, 2553
BtgI	CCRYGG	3 cut(s)	454, 788, 2448
BtgZI	GCGATG	2 cut(s)	351, 474
BtsCI	GGATG	6 cut(s)	184, 364, 1416, 2053, 2563, 2564
BtsI	GCAGTG	3 cut(s)	857, 1076, 2328
BtsIMutI	CAGTG	5 cut(s)	276, 857, 878, 1076, 2328
Cac8I	GCNNGC	6 cut(s)	10, 680, 1352, 2032, 2441, 2445
CfoI	GCGC	1 cut(s)	1333
Cfr10I	RCCGGY	1 cut(s)	2443
Cfr13I	GGNCC	4 cut(s)	262, 1266, 2020, 2326
Cfr42I	CCGCGG	1 cut(s)	457
CseI	GACGC	1 cut(s)	111
Csp6I	GTAC	7 cut(s)	232, 604, 835, 1224, 1683, 2495, 2544
CspCI	CAANNNNNGTGG	2 cut(s)	913, 948
CviAII	CATG	8 cut(s)	425, 992, 1312, 1482, 1873, 2355, 2393, 2440
CviQI	GTAC	7 cut(s)	232, 604, 835, 1224, 1683, 2495, 2544
DdeI	CTNAG	5 cut(s)	20, 563, 749, 1794, 2003
DraI	TTTAAA	1 cut(s)	331
EaeI	YGGCCR	3 cut(s)	594, 2239, 2445
EagI	CGGCCG	2 cut(s)	594, 2445
Eam1104I	CTCTTC	3 cut(s)	834, 855, 860
EarI	CTCTTC	3 cut(s)	834, 855, 860
EciI	GGCGGA	1 cut(s)	872
EclXI	CGGCCG	2 cut(s)	594, 2445
Eco24I	GRGCYC	1 cut(s)	1977
Eco31I	GGTCTC	1 cut(s)	105
Eco47I	GGWCC	4 cut(s)	262, 1266, 2020, 2326
Eco52I	CGGCCG	2 cut(s)	594, 2445
Eco57I	CTGAAG	6 cut(s)	190, 378, 783, 1533, 1671, 2468
Eco72I	CACGTG	1 cut(s)	2527
Eco88I	CYCGRG	3 cut(s)	624, 1208, 2127
EcoO109I	RGGNCCY	1 cut(s)	2020
EcoRI	GAATTC	2 cut(s)	217, 240
EcoRII	CCWGG	4 cut(s)	52, 1180, 1705, 2553
EcoT22I	ATGCAT	3 cut(s)	736, 993, 2390
EcoT38I	GRGCYC	1 cut(s)	1977
FaeI	CATG	8 cut(s)	428, 995, 1315, 1485, 1876, 2358, 2396, 2443
FalI	AAGNNNNNCTT	4 cut(s)	423, 455, 574, 606
FaqI	GGGAC	3 cut(s)	211, 842, 2033
FatI	CATG	8 cut(s)	424, 991, 1311, 1481, 1872, 2354, 2392, 2439
FauI	CCCGC	3 cut(s)	458, 671, 1387
FauNDI	CATATG	1 cut(s)	1231
FblI	GTMKAC	4 cut(s)	383, 1689, 1748, 2431
FokI	GGATG	6 cut(s)	191, 371, 1403, 2060, 2551, 2570
FriOI	GRGCYC	1 cut(s)	1977
FspBI	CTAG	4 cut(s)	1053, 2031, 2225, 2427
FspI	TGCGCA	1 cut(s)	1332
GlaI	GCGC	1 cut(s)	1332
GsuI	CTGGAG	1 cut(s)	336
HaeIII	GGCC	5 cut(s)	596, 895, 2241, 2447, 2553
HapII	CCGG	6 cut(s)	212, 229, 515, 597, 1151, 2444
HgaI	GACGC	1 cut(s)	111
HhaI	GCGC	1 cut(s)	1333
Hin1II	CATG	8 cut(s)	428, 995, 1315, 1485, 1876, 2358, 2396, 2443
Hin6I	GCGC	1 cut(s)	1331
HinP1I	GCGC	1 cut(s)	1331
HindIII	AAGCTT	3 cut(s)	746, 1661, 1885
HpaII	CCGG	6 cut(s)	212, 229, 515, 597, 1151, 2444
HphI	GGTGA	3 cut(s)	544, 1508, 2148
Hpy166II	GTNNAC	8 cut(s)	384, 1266, 1365, 1690, 1749, 2326, 2432, 2508
Hpy8I	GTNNAC	8 cut(s)	384, 1266, 1365, 1690, 1749, 2326, 2432, 2508
Hpy99I	CGWCG	3 cut(s)	127, 239, 415
HpyCH4III	ACNGT	4 cut(s)	789, 1099, 1687, 2147
HpyCH4IV	ACGT	4 cut(s)	234, 468, 1324, 2526
HpyF10VI	GCNNNNNNNGC	5 cut(s)	398, 1226, 1376, 1406, 2410
HpyF3I	CTNAG	5 cut(s)	20, 563, 749, 1794, 2003
HpySE526I	ACGT	4 cut(s)	234, 468, 1324, 2526
Hsp92II	CATG	8 cut(s)	428, 995, 1315, 1485, 1876, 2358, 2396, 2443
HspAI	GCGC	1 cut(s)	1331
KroI	GCCGGC	1 cut(s)	2443
KroNI	GCCGGC	1 cut(s)	2445
KspI	CCGCGG	1 cut(s)	457
LguI	GCTCTTC	2 cut(s)	834, 860
LmnI	GCTCC	2 cut(s)	1397, 1980
MaeI	CTAG	4 cut(s)	1053, 2031, 2225, 2427
MaeII	ACGT	4 cut(s)	234, 468, 1324, 2526
MaeIII	GTNAC	6 cut(s)	68, 584, 1797, 2154, 2487, 2578
MhlI	GDGCHC	1 cut(s)	1977
MlyI	GAGTC	2 cut(s)	327, 414
MmeI	TCCRAC	5 cut(s)	217, 558, 1020, 1312, 2574
Mph1103I	ATGCAT	3 cut(s)	736, 993, 2390
MroNI	GCCGGC	1 cut(s)	2443
MroXI	GAANNNNTTC	1 cut(s)	1084
MseI	TTAA	8 cut(s)	84, 330, 744, 1440, 1487, 1610, 2276, 2456
MslI	CAYNNNNRTG	2 cut(s)	1323, 1370
MspA1I	CMGCKG	6 cut(s)	374, 456, 500, 847, 1370, 1631
MspCI	CTTAAG	1 cut(s)	2275
MspI	CCGG	6 cut(s)	212, 229, 515, 597, 1151, 2444
MspR9I	CCNGG	7 cut(s)	54, 213, 229, 516, 1182, 1707, 2555
Mva1269I	GAATGC	2 cut(s)	10, 1333
MvaI	CCWGG	4 cut(s)	54, 1182, 1707, 2555
MvnI	CGCG	1 cut(s)	456
MwoI	GCNNNNNNNGC	5 cut(s)	398, 1226, 1376, 1406, 2410
NaeI	GCCGGC	1 cut(s)	2445
NciI	CCSGG	3 cut(s)	213, 229, 516
NdeI	CATATG	1 cut(s)	1231
NgoMIV	GCCGGC	1 cut(s)	2443
NheI	GCTAGC	1 cut(s)	2030
NlaIII	CATG	8 cut(s)	428, 995, 1315, 1485, 1876, 2358, 2396, 2443
NlaIV	GGNNCC	4 cut(s)	264, 370, 1976, 2021
NmeAIII	GCCGAG	1 cut(s)	871
NmuCI	GTSAC	2 cut(s)	584, 2154
NsbI	TGCGCA	1 cut(s)	1332
NsiI	ATGCAT	3 cut(s)	736, 993, 2390
NspI	RCATGY	5 cut(s)	1315, 1876, 2358, 2396, 2443
NspV	TTCGAA	1 cut(s)	192
OliI	CACNNNNGTG	1 cut(s)	1370
PaeI	GCATGC	1 cut(s)	2443
PaeR7I	CTCGAG	2 cut(s)	624, 1208
PciI	ACATGT	3 cut(s)	1311, 2354, 2392
PciSI	GCTCTTC	2 cut(s)	834, 860
PctI	GAATGC	2 cut(s)	10, 1333
PdiI	GCCGGC	1 cut(s)	2445
PdmI	GAANNNNTTC	1 cut(s)	1084
PfeI	GAWTC	8 cut(s)	553, 793, 965, 1579, 1810, 1994, 2059, 2314
PleI	GAGTC	2 cut(s)	326, 414
PmaCI	CACGTG	1 cut(s)	2527
PmlI	CACGTG	1 cut(s)	2527
PpsI	GAGTC	2 cut(s)	326, 414
Ppu21I	YACGTR	2 cut(s)	1325, 2527
PpuMI	RGGWCCY	1 cut(s)	2020
PscI	ACATGT	3 cut(s)	1311, 2354, 2392
Psp5II	RGGWCCY	1 cut(s)	2020
Psp6I	CCWGG	4 cut(s)	52, 1180, 1705, 2553
PspCI	CACGTG	1 cut(s)	2527
PspGI	CCWGG	4 cut(s)	52, 1180, 1705, 2553
PspN4I	GGNNCC	4 cut(s)	264, 370, 1976, 2021
PspPI	GGNCC	4 cut(s)	262, 1266, 2020, 2326
PspPPI	RGGWCCY	1 cut(s)	2020
PspXI	VCTCGAGB	1 cut(s)	624
PstI	CTGCAG	1 cut(s)	852
PvuII	CAGCTG	2 cut(s)	847, 1631
RsaI	GTAC	7 cut(s)	233, 605, 836, 1225, 1684, 2496, 2545
RsaNI	GTAC	7 cut(s)	232, 604, 835, 1224, 1683, 2495, 2544
RseI	CAYNNNNRTG	2 cut(s)	1323, 1370
SacII	CCGCGG	1 cut(s)	457
SapI	GCTCTTC	2 cut(s)	834, 860
SaqAI	TTAA	8 cut(s)	84, 330, 744, 1440, 1487, 1610, 2276, 2456
Sau96I	GGNCC	4 cut(s)	262, 1266, 2020, 2326
SchI	GAGTC	2 cut(s)	327, 414
ScrFI	CCNGG	7 cut(s)	54, 213, 229, 516, 1182, 1707, 2555
SduI	GDGCHC	1 cut(s)	1977
SfcI	CTRYAG	2 cut(s)	848, 1389
Sfr274I	CTCGAG	2 cut(s)	624, 1208
Sfr303I	CCGCGG	1 cut(s)	457
SfuI	TTCGAA	1 cut(s)	192
SgrBI	CCGCGG	1 cut(s)	457
SinI	GGWCC	4 cut(s)	262, 1266, 2020, 2326
SlaI	CTCGAG	2 cut(s)	624, 1208
SmiMI	CAYNNNNRTG	2 cut(s)	1323, 1370
SmlI	CTYRAG	4 cut(s)	624, 1208, 1752, 2275
SmoI	CTYRAG	4 cut(s)	624, 1208, 1752, 2275
SphI	GCATGC	1 cut(s)	2443
SspI	AATATT	2 cut(s)	189, 2094
SspMI	CTAG	4 cut(s)	1053, 2031, 2225, 2427
StyD4I	CCNGG	7 cut(s)	52, 211, 227, 514, 1180, 1705, 2553
TaaI	ACNGT	4 cut(s)	789, 1099, 1687, 2147
TaiI	ACGT	4 cut(s)	237, 471, 1327, 2529
TaqII	GACCGA	1 cut(s)	1283
TatI	WGTACW	2 cut(s)	1223, 2494
TauI	GCSGC	5 cut(s)	401, 456, 459, 637, 2477
TfiI	GAWTC	8 cut(s)	553, 793, 965, 1579, 1810, 1994, 2059, 2314
Tru1I	TTAA	8 cut(s)	84, 330, 744, 1440, 1487, 1610, 2276, 2456
Tru9I	TTAA	8 cut(s)	84, 330, 744, 1440, 1487, 1610, 2276, 2456
TscAI	CASTG	5 cut(s)	276, 857, 878, 1076, 2328
TseFI	GTSAC	2 cut(s)	584, 2154
Tsp45I	GTSAC	2 cut(s)	584, 2154
TspGWI	ACGGA	1 cut(s)	2282
TspRI	CASTG	5 cut(s)	276, 857, 878, 1076, 2328
Vha464I	CTTAAG	1 cut(s)	2275
VpaK11BI	GGWCC	4 cut(s)	262, 1266, 2020, 2326
XceI	RCATGY	5 cut(s)	1315, 1876, 2358, 2396, 2443
XhoI	CTCGAG	2 cut(s)	624, 1208
XmiI	GTMKAC	4 cut(s)	383, 1689, 1748, 2431
XmnI	GAANNNNTTC	1 cut(s)	1084
XspI	CTAG	4 cut(s)	1053, 2031, 2225, 2427
Zsp2I	ATGCAT	3 cut(s)	736, 993, 2390

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.