Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8421279.1

Orthogroup ID

OG0007917

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 1366

Gene Structure 1366 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8421279.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1297 bp

atggaattcgtcactggtacacacccaggttctgttttccaagttggttctatctttttgattgttttttgctctcttgctctgttttgctctgcttcgagttcaatcacacagggccaaactttgaaagacggcgcgactttgatctccgatggccaaaccttcgaactgggattcttcagtccggggaactcttcgtcccggtacgtgggtatttggtactacggcctttcaaaccggacaatcgtttgggtcgcaaacagagagaagccgatttccgatgaagctggagtgttaacaatcggaagcgatggtaatctggtgattcgagatggaagcagcagtgaaatatggtctagcaatgtttcatcaatatccaagaacacatctgcagtcctgaaagatacaggaagccttgtgctttcggcaaatgaaactaccatgccttactgggagagtttcgattttcctacggatacgtttttgcctgggatgagagtgaaggtgaacgctaacgagggagtgaatcgtgctttcaggtcttggaaatctgccaacgatccagctccaggtgattatttctcgggggttgatcctcgagcagcaccacagcttatgatatggaatggttcagaaagaagatggaggagtgggcactggaacaagctgatatttattggtcttcccgaaatgcccacaagatactcggctggttttagtcttacggatcgggcagaccaaaatgggagcaactacttaacttacacaccatggaatgtgtccaataagctgaggtttcaaattaggtgggatggttatgaagagcaatctatttgggtggaagatcaagataagtgggttgttcttatgtctcagccgaacaagagcacagagtgtgagctttacaacaagtgtgggaacttcgggctttgcagtgcatcggatgctagttgtgattgtatgcaaggatttgaaagaaaaaattgggggaattggtcagatgggtgttctaggaagaccccattgaagtgtcagagaaatagtactaatgatgaagatggtgaggatggttttgtggcggtgaagtgtacaaaggtgccggattttgcagacttggtggtgtcgacaggtccacaggtgtcttgtgagcagtcttgtttgaacaattgttcttgcactgcttatgcagatgtttctggacttggttgtatgctttggacaactgagttggtggatgtgcagcagttttcaaagggaggaaacaccttgtatgttcgtcttgctcatgccgatttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

B_lectin DUF3403 PAN_2 Pkinase_Tyr S_locus_glycop

Protein Analysis

432

Amino Acids

47.69

Weight (kDa)

4.92

Isoelectric Point (pI)

37.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007917)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G61610 AT1G61610 AT4G21390 AT4G21390
fragaria_vesca	FvH4_3g03590 FvH4_3g03590 FvH4_3g03590 FvH4_3g03590 FvH4_3g03590
malus_domestica	MD05G1329600.v1.1 MD10G1306600.v1.1
prunus_persica	Prupe.4G033200_v2.0.a1
pyrus_communis	pycom05g30270 pycom10g25870
rosa_chinensis	RchiOBHm_Chr5g0005641
rosa_laevigata	RLG00000031314
rosa_multiflora	Rmu_co8421279.1_g000001
rosa_roxburghii	Rroxscaffold_1G00070190
rosa_rugosa	Rorug04G0417000
rosa_samantha	Rh5AG044400 Rh5BG043200 Rh5CG052000 Rh5DG043200
rosa_wichuraiana	Rw5G004470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	1096
AccI	GTMKAC	1 cut(s)	1124
AccII	CGCG	1 cut(s)	137
AciI	CCGC	1 cut(s)	1079
AclWI	GGATC	3 cut(s)	554, 587, 735
AcoI	YGGCCR	1 cut(s)	154
AcsI	RAATTY	1 cut(s)	5
AcuI	CTGAAG	1 cut(s)	163
AdeI	CACNNNGTG	1 cut(s)	894
AfaI	GTAC	5 cut(s)	19, 206, 221, 1045, 1090
AfiI	CCNNNNNNNGG	2 cut(s)	208, 569
AgsI	TTSAA	8 cut(s)	105, 127, 234, 800, 974, 1027, 1162, 1251
AjnI	CCWGG	3 cut(s)	25, 487, 568
AloI	GAACNNNNNNTCC	2 cut(s)	182, 214
AluBI	AGCT	6 cut(s)	287, 566, 613, 667, 790, 901
AluI	AGCT	6 cut(s)	287, 566, 613, 667, 790, 901
Alw21I	GWGCWC	1 cut(s)	890
Alw26I	GTCTC	1 cut(s)	876
AlwI	GGATC	3 cut(s)	554, 587, 735
AlwNI	CAGNNNCTG	1 cut(s)	32
Ama87I	CYCGRG	2 cut(s)	583, 597
AoxI	GGCC	3 cut(s)	115, 154, 226
ApeKI	GCWGC	3 cut(s)	339, 602, 1240
ApoI	RAATTY	1 cut(s)	5
AspLEI	GCGC	1 cut(s)	137
AspS9I	GGNCC	2 cut(s)	115, 1130
AsuC2I	CCSGG	2 cut(s)	186, 202
AsuHPI	GGTGA	5 cut(s)	334, 517, 584, 1073, 1093
AsuII	TTCGAA	1 cut(s)	165
AvaI	CYCGRG	2 cut(s)	583, 597
AvaII	GGWCC	1 cut(s)	1130
BaeGI	GKGCMC	1 cut(s)	657
BaeI	ACNNNNGTAYC	2 cut(s)	196, 229
BalI	TGGCCA	1 cut(s)	156
BanI	GGYRCC	1 cut(s)	1096
BbsI	GAAGAC	2 cut(s)	674, 1022
Bbv12I	GWGCWC	1 cut(s)	890
BbvCI	CCTCAGC	1 cut(s)	791
BbvI	GCAGC	3 cut(s)	351, 614, 1252
BccI	CCATC	8 cut(s)	146, 305, 326, 636, 806, 995, 1052, 1061
BceAI	ACGGC	2 cut(s)	148, 241
BciT130I	CCWGG	3 cut(s)	27, 489, 570
BciVI	GTATCC	1 cut(s)	469
BcnI	CCSGG	2 cut(s)	186, 202
BcoDI	GTCTC	1 cut(s)	876
BfaI	CTAG	3 cut(s)	357, 948, 1011
BfmI	CTRYAG	1 cut(s)	390
BfuI	GTATCC	1 cut(s)	469
BisI	GCNGC	3 cut(s)	340, 603, 1241
BlsI	GCNGC	3 cut(s)	341, 604, 1242
BmcAI	AGTACT	1 cut(s)	1045
Bme1390I	CCNGG	5 cut(s)	27, 186, 202, 489, 570
Bme18I	GGWCC	1 cut(s)	1130
BmeT110I	CYCGRG	2 cut(s)	583, 597
BmgT120I	GGNCC	2 cut(s)	115, 1130
BmiI	GGNNCC	1 cut(s)	1098
BmrFI	CCNGG	5 cut(s)	27, 186, 202, 489, 570
BmrI	ACTGGG	2 cut(s)	179, 460
BmsI	GCATC	2 cut(s)	934, 947
BmuI	ACTGGG	2 cut(s)	179, 460
BpiI	GAAGAC	2 cut(s)	674, 1022
BpmI	CTGGAG	2 cut(s)	309, 552
Bpu10I	CCTNAGC	1 cut(s)	791
Bpu14I	TTCGAA	1 cut(s)	165
BpuMI	CCSGG	2 cut(s)	186, 202
BsaAI	YACGTR	1 cut(s)	208
BsaBI	GATNNNNATC	1 cut(s)	315
BsaJI	CCNNGG	4 cut(s)	25, 185, 488, 770
BsaWI	WCCGGW	1 cut(s)	237
Bsc4I	CCNNNNNNNGG	2 cut(s)	208, 569
Bse1I	ACTGG	4 cut(s)	19, 174, 455, 662
Bse3DI	GCAATG	1 cut(s)	367
Bse8I	GATNNNNATC	1 cut(s)	315
BseBI	CCWGG	3 cut(s)	27, 489, 570
BseDI	CCNNGG	4 cut(s)	25, 185, 488, 770
BseGI	GGATG	5 cut(s)	498, 817, 949, 1072, 1240
BseJI	GATNNNNATC	1 cut(s)	315
BseLI	CCNNNNNNNGG	2 cut(s)	208, 569
BseMI	GCAATG	1 cut(s)	367
BseMII	CTCAG	3 cut(s)	782, 887, 1215
BseNI	ACTGG	4 cut(s)	19, 174, 455, 662
BseRI	GAGGAG	1 cut(s)	661
BseSI	GKGCMC	1 cut(s)	657
BseXI	GCAGC	3 cut(s)	351, 614, 1252
BsgI	GTGCAG	1 cut(s)	1259
Bsh1236I	CGCG	1 cut(s)	137
BshFI	GGCC	3 cut(s)	117, 156, 228
BshNI	GGYRCC	1 cut(s)	1096
BsiHKAI	GWGCWC	1 cut(s)	890
BsiHKCI	CYCGRG	2 cut(s)	583, 597
BsiSI	CCGG	4 cut(s)	185, 202, 238, 1100
BslFI	GGGAC	1 cut(s)	184
BslI	CCNNNNNNNGG	2 cut(s)	208, 569
BsmAI	GTCTC	1 cut(s)	876
BsmFI	GGGAC	1 cut(s)	184
BsnI	GGCC	3 cut(s)	117, 156, 228
BsoBI	CYCGRG	2 cut(s)	583, 597
Bsp119I	TTCGAA	1 cut(s)	165
Bsp1286I	GDGCHC	2 cut(s)	657, 890
Bsp1407I	TGTACA	1 cut(s)	1088
Bsp143I	GATC	5 cut(s)	144, 559, 592, 727, 844
Bsp19I	CCATGG	1 cut(s)	770
BspACI	CCGC	1 cut(s)	1079
BspANI	GGCC	3 cut(s)	117, 156, 228
BspCNI	CTCAG	3 cut(s)	783, 886, 1216
BspFNI	CGCG	1 cut(s)	137
BspLI	GGNNCC	1 cut(s)	1098
BspMAI	CTGCAG	1 cut(s)	394
BspPI	GGATC	3 cut(s)	554, 587, 735
BspQI	GCTCTTC	1 cut(s)	816
BspT104I	TTCGAA	1 cut(s)	165
BspT107I	GGYRCC	1 cut(s)	1096
BsrDI	GCAATG	1 cut(s)	367
BsrGI	TGTACA	1 cut(s)	1088
BsrI	ACTGG	4 cut(s)	19, 174, 455, 662
BssECI	CCNNGG	4 cut(s)	25, 185, 488, 770
BssMI	GATC	5 cut(s)	144, 559, 592, 727, 844
BssT1I	CCWWGG	1 cut(s)	770
Bst2UI	CCWGG	3 cut(s)	27, 489, 570
Bst6I	CTCTTC	2 cut(s)	199, 816
BstAPI	GCANNNNNTGC	1 cut(s)	944
BstAUI	TGTACA	1 cut(s)	1088
BstBAI	YACGTR	1 cut(s)	208
BstBI	TTCGAA	1 cut(s)	165
BstDEI	CTNAG	3 cut(s)	791, 873, 1224
BstDSI	CCRYGG	1 cut(s)	770
BstF5I	GGATG	5 cut(s)	498, 817, 949, 1072, 1240
BstFNI	CGCG	1 cut(s)	137
BstHHI	GCGC	1 cut(s)	137
BstKTI	GATC	5 cut(s)	147, 562, 595, 730, 847
BstMAI	GTCTC	1 cut(s)	876
BstMBI	GATC	5 cut(s)	144, 559, 592, 727, 844
BstMWI	GCNNNNNNNGC	1 cut(s)	944
BstNI	CCWGG	3 cut(s)	27, 489, 570
BstSCI	CCNGG	5 cut(s)	25, 184, 200, 487, 568
BstSFI	CTRYAG	1 cut(s)	390
BstSLI	GKGCMC	1 cut(s)	657
BstUI	CGCG	1 cut(s)	137
BstV1I	GCAGC	3 cut(s)	351, 614, 1252
BstV2I	GAAGAC	2 cut(s)	674, 1022
BsuI	GTATCC	1 cut(s)	469
BsuRI	GGCC	3 cut(s)	117, 156, 228
BtgI	CCRYGG	1 cut(s)	770
BtgZI	GCGATG	1 cut(s)	324
BtsCI	GGATG	5 cut(s)	498, 817, 949, 1072, 1240
BtsI	GCAGTG	3 cut(s)	349, 940, 1176
BtsIMutI	CAGTG	5 cut(s)	12, 349, 655, 940, 1176
CaiI	CAGNNNCTG	1 cut(s)	32
CfoI	GCGC	1 cut(s)	137
Cfr13I	GGNCC	2 cut(s)	115, 1130
Csp6I	GTAC	5 cut(s)	18, 205, 220, 1044, 1089
CspCI	CAANNNNNGTGG	6 cut(s)	788, 823, 836, 871, 895, 930
CviAII	CATG	3 cut(s)	442, 771, 1286
CviQI	GTAC	5 cut(s)	18, 205, 220, 1044, 1089
DdeI	CTNAG	3 cut(s)	791, 873, 1224
DpnI	GATC	5 cut(s)	146, 561, 594, 729, 846
DpnII	GATC	5 cut(s)	144, 559, 592, 727, 844
DraIII	CACNNNGTG	1 cut(s)	894
EaeI	YGGCCR	1 cut(s)	154
Eam1104I	CTCTTC	2 cut(s)	199, 816
EarI	CTCTTC	2 cut(s)	199, 816
Eco130I	CCWWGG	1 cut(s)	770
Eco47I	GGWCC	1 cut(s)	1130
Eco57I	CTGAAG	1 cut(s)	163
Eco88I	CYCGRG	2 cut(s)	583, 597
EcoRI	GAATTC	1 cut(s)	5
EcoRII	CCWGG	3 cut(s)	25, 487, 568
EcoT14I	CCWWGG	1 cut(s)	770
ErhI	CCWWGG	1 cut(s)	770
FaeI	CATG	3 cut(s)	445, 774, 1289
FaqI	GGGAC	1 cut(s)	184
FatI	CATG	3 cut(s)	441, 770, 1285
FblI	GTMKAC	1 cut(s)	1124
Fnu4HI	GCNGC	3 cut(s)	340, 603, 1241
FokI	GGATG	5 cut(s)	505, 824, 956, 1079, 1247
Fsp4HI	GCNGC	3 cut(s)	340, 603, 1241
FspBI	CTAG	3 cut(s)	357, 948, 1011
GlaI	GCGC	1 cut(s)	136
GluI	GCNGC	3 cut(s)	340, 603, 1241
GsuI	CTGGAG	2 cut(s)	309, 552
HaeIII	GGCC	3 cut(s)	117, 156, 228
HapII	CCGG	4 cut(s)	185, 202, 238, 1100
HhaI	GCGC	1 cut(s)	137
Hin1II	CATG	3 cut(s)	445, 774, 1289
Hin6I	GCGC	1 cut(s)	135
HinP1I	GCGC	1 cut(s)	135
HincII	GTYRAC	2 cut(s)	297, 1125
HindII	GTYRAC	2 cut(s)	297, 1125
HinfI	GANTC	3 cut(s)	174, 325, 526
HpaI	GTTAAC	1 cut(s)	297
HpaII	CCGG	4 cut(s)	185, 202, 238, 1100
HphI	GGTGA	5 cut(s)	334, 517, 584, 1073, 1093
Hpy166II	GTNNAC	6 cut(s)	20, 297, 508, 1089, 1125, 1133
Hpy188I	TCNGA	7 cut(s)	151, 280, 305, 634, 943, 1000, 1035
Hpy188III	TCNNGA	5 cut(s)	329, 397, 686, 848, 1197
Hpy8I	GTNNAC	6 cut(s)	20, 297, 508, 1089, 1125, 1133
HpyAV	CCTTC	2 cut(s)	172, 496
HpyCH4IV	ACGT	2 cut(s)	207, 479
HpyCH4V	TGCA	8 cut(s)	392, 933, 938, 964, 1109, 1176, 1187, 1240
HpyF10VI	GCNNNNNNNGC	1 cut(s)	944
HpyF3I	CTNAG	3 cut(s)	791, 873, 1224
HpySE526I	ACGT	2 cut(s)	207, 479
Hsp92II	CATG	3 cut(s)	445, 774, 1289
HspAI	GCGC	1 cut(s)	135
KspAI	GTTAAC	1 cut(s)	297
Kzo9I	GATC	5 cut(s)	144, 559, 592, 727, 844
LguI	GCTCTTC	1 cut(s)	816
LmnI	GCTCC	2 cut(s)	571, 747
Lsp1109I	GCAGC	3 cut(s)	351, 614, 1252
LweI	GCATC	2 cut(s)	934, 947
MaeI	CTAG	3 cut(s)	357, 948, 1011
MaeII	ACGT	2 cut(s)	207, 479
MaeIII	GTNAC	1 cut(s)	10
MalI	GATC	5 cut(s)	146, 561, 594, 729, 846
MboI	GATC	5 cut(s)	144, 559, 592, 727, 844
MboII	GAAGA	8 cut(s)	169, 186, 651, 674, 833, 854, 1027, 1067
MfeI	CAATTG	1 cut(s)	1165
MhlI	GDGCHC	2 cut(s)	657, 890
MlsI	TGGCCA	1 cut(s)	156
MluCI	AATT	5 cut(s)	5, 801, 982, 991, 1165
MluNI	TGGCCA	1 cut(s)	156
MnlI	CCTC	6 cut(s)	511, 606, 639, 786, 1057, 1250
Mox20I	TGGCCA	1 cut(s)	156
MscI	TGGCCA	1 cut(s)	156
MseI	TTAA	2 cut(s)	296, 758
MslI	CAYNNNNRTG	1 cut(s)	1027
Msp20I	TGGCCA	1 cut(s)	156
MspI	CCGG	4 cut(s)	185, 202, 238, 1100
MspR9I	CCNGG	5 cut(s)	27, 186, 202, 489, 570
MunI	CAATTG	1 cut(s)	1165
MvaI	CCWGG	3 cut(s)	27, 489, 570
MvnI	CGCG	1 cut(s)	137
MwoI	GCNNNNNNNGC	1 cut(s)	944
NciI	CCSGG	2 cut(s)	186, 202
NcoI	CCATGG	1 cut(s)	770
NdeII	GATC	5 cut(s)	144, 559, 592, 727, 844
NlaIII	CATG	3 cut(s)	445, 774, 1289
NlaIV	GGNNCC	1 cut(s)	1098
NmeAIII	GCCGAG	1 cut(s)	686
NmuCI	GTSAC	1 cut(s)	10
NspV	TTCGAA	1 cut(s)	165
PaeR7I	CTCGAG	1 cut(s)	597
PciSI	GCTCTTC	1 cut(s)	816
PfeI	GAWTC	3 cut(s)	174, 325, 526
PkrI	GCNGC	3 cut(s)	341, 604, 1242
Ppu21I	YACGTR	1 cut(s)	208
Psp6I	CCWGG	3 cut(s)	25, 487, 568
PspGI	CCWGG	3 cut(s)	25, 487, 568
PspN4I	GGNNCC	1 cut(s)	1098
PspPI	GGNCC	2 cut(s)	115, 1130
PspXI	VCTCGAGB	1 cut(s)	597
PstI	CTGCAG	1 cut(s)	394
PstNI	CAGNNNCTG	1 cut(s)	32
RsaI	GTAC	5 cut(s)	19, 206, 221, 1045, 1090
RsaNI	GTAC	5 cut(s)	18, 205, 220, 1044, 1089
RseI	CAYNNNNRTG	1 cut(s)	1027
SalI	GTCGAC	1 cut(s)	1123
SapI	GCTCTTC	1 cut(s)	816
SaqAI	TTAA	2 cut(s)	296, 758
SatI	GCNGC	3 cut(s)	340, 603, 1241
Sau3AI	GATC	5 cut(s)	144, 559, 592, 727, 844
Sau96I	GGNCC	2 cut(s)	115, 1130
ScaI	AGTACT	1 cut(s)	1045
ScrFI	CCNGG	5 cut(s)	27, 186, 202, 489, 570
SduI	GDGCHC	2 cut(s)	657, 890
SfaNI	GCATC	2 cut(s)	934, 947
SfcI	CTRYAG	1 cut(s)	390
Sfr274I	CTCGAG	1 cut(s)	597
SfuI	TTCGAA	1 cut(s)	165
SinI	GGWCC	1 cut(s)	1130
SlaI	CTCGAG	1 cut(s)	597
SmiMI	CAYNNNNRTG	1 cut(s)	1027
SmlI	CTYRAG	1 cut(s)	597
SmoI	CTYRAG	1 cut(s)	597
Sse9I	AATT	5 cut(s)	5, 801, 982, 991, 1165
SsiI	CCGC	1 cut(s)	1079
SspMI	CTAG	3 cut(s)	357, 948, 1011
StyD4I	CCNGG	5 cut(s)	25, 184, 200, 487, 568
StyI	CCWWGG	1 cut(s)	770
TaiI	ACGT	2 cut(s)	210, 482
TaqI	TCGA	6 cut(s)	98, 165, 328, 462, 598, 1124
TasI	AATT	5 cut(s)	5, 801, 982, 991, 1165
TatI	WGTACW	2 cut(s)	1043, 1088
TfiI	GAWTC	3 cut(s)	174, 325, 526
Tru1I	TTAA	2 cut(s)	296, 758
Tru9I	TTAA	2 cut(s)	296, 758
TscAI	CASTG	5 cut(s)	19, 349, 662, 940, 1183
TseFI	GTSAC	1 cut(s)	10
TseI	GCWGC	3 cut(s)	339, 602, 1240
Tsp45I	GTSAC	1 cut(s)	10
TspDTI	ATGAA	5 cut(s)	297, 357, 447, 834, 1068
TspGWI	ACGGA	2 cut(s)	488, 740
TspRI	CASTG	5 cut(s)	19, 349, 662, 940, 1183
VpaK11BI	GGWCC	1 cut(s)	1130
XapI	RAATTY	1 cut(s)	5
XhoI	CTCGAG	1 cut(s)	597
XmiI	GTMKAC	1 cut(s)	1124
XspI	CTAG	3 cut(s)	357, 948, 1011
ZrmI	AGTACT	1 cut(s)	1045

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.