Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0016281

Physical Location & Seq

Genomic Coordinates Forward (+)

27648463 .. 27650378

Gene Structure 1916 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 915 bp

ATGGCGTCTCGCAACCAAAACAGGGCTCCTCGGAGCCCGTTTTCTAAAAAGAGTAGTCTTGATGAAGTTCCCTTAGACAAGCGGCGGAGAATTGAAACAAGAAAACCGGAGGTACCGAGTAGTATGGGCCGCCAACGACCACCACTTGCTGTTGTTAAGCAAGACGCAGCAGGTACAAGCGATATAGGCAGTGTGGAGGGATCAGAGTGTGCCAATGTTGAGTTTACGAAGGAAGAAGTCGAGGCGTTGTTGATTGAGAAGTTAAAAGTGAAGAAATTTGATCATAAGGGGAAAGCTGAGCAGTTAGCTGATTATAGTAAGAGGCTGAAGCTATGCATCAAATGGTTGCAGGAAGTTGAGGAAGGCCATATTCTCGAGGAGGAAAAACTACGGAATGCATTGGCTTCTGCAGAAAAACAATGCGCGGATACTGAGGTGGAGATGAAAAACAAGGTCGACGAGCTCAATGCCGTAAATTCAAAGCTGAGGGAAAATATAGCTACTTTAGAAGAGAAACTTGCGAAAGAAGAATCAGAGAAGTTGGATGCGATTGCTAGTCACAGAAGTGAAAAGGAAGCAAGGGATGCTGCTGAGAAGTTGCAAGCTTCTCTCTCACAGAAGCTTGAAATAGTGCGGGAGGAGAAATTAGTTGCAGACAAGAAGGTTTCATCGTATCAGGATTTATATAATCGAGCACAAGAGTACAACAAGAGTCTACAACAGTACAATAGCAAACTCCAAAAAGATCTTGAAACTGCCACCGAGTCTCTCAAACGAGTTGAAGATGAGAAAAGGACAGTTCTGGAGACGCTTAGCAATTTGAGGGTTCACAATAAGGCGTTGCAAGATGAGTTGACTAAAGTAACAGTACGCCTCACTGGACGAAACATTAAAGCAGAAGGAATTATTAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000212 GO:0000226 GO:0000280 GO:0003674 GO:0003774 GO:0003777 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005819 GO:0005856 GO:0005871 GO:0005872 GO:0005874 GO:0005875 GO:0005876 GO:0006928 GO:0006996 GO:0007010 GO:0007017 GO:0007018 GO:0007049 GO:0007051 GO:0007053 GO:0007140 GO:0007276 GO:0008150 GO:0008569 GO:0009524 GO:0009971 GO:0009987 GO:0015630 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019953 GO:0022402 GO:0022412 GO:0022414 GO:0022607 GO:0032501 GO:0032504 GO:0032991 GO:0042623 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044085 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0044703 GO:0048232 GO:0048285 GO:0048609 GO:0051225 GO:0051321 GO:0051704 GO:0055048 GO:0070925 GO:0071840 GO:0090306 GO:0099080 GO:0099081 GO:0099512 GO:0099513 GO:0140013 GO:1903046 GO:1990939

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Kinesin

Protein Analysis

305

Amino Acids

34.62

Weight (kDa)

8.51

Isoelectric Point (pI)

62.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016281)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g02882
pyrus_communis	pycom10g26300
rosa_laevigata	RLG00000031229
rosa_multiflora	Rmu_sc0000433.1_g000005 Rmu_sc0002453.1_g000003
rosa_roxburghii	Rroxscaffold_1G00071070
rosa_rugosa	Rorug04G0411800
rosa_samantha	Rh5AG039300 Rh5AG039800 Rh5BG038400 Rh5CG042500 Rh5DG038000 Rh5DG038100
rosa_wichuraiana	Rw5G003550 Rw5G003760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	161
Acc65I	GGTACC	1 cut(s)	112
AccB1I	GGYRCC	1 cut(s)	112
AccI	GTMKAC	2 cut(s)	456, 715
AccII	CGCG	1 cut(s)	425
AciI	CCGC	5 cut(s)	82, 85, 130, 425, 634
AclWI	GGATC	1 cut(s)	208
AcsI	RAATTY	2 cut(s)	275, 475
AcuI	CTGAAG	1 cut(s)	347
AcyI	GRCGYC	1 cut(s)	5
AfaI	GTAC	5 cut(s)	114, 175, 704, 725, 870
AfiI	CCNNNNNNNGG	1 cut(s)	22
AgsI	TTSAA	5 cut(s)	95, 480, 626, 752, 782
AleI	CACNNNNGTG	1 cut(s)	564
AluBI	AGCT	8 cut(s)	296, 308, 331, 463, 484, 500, 605, 622
AluI	AGCT	8 cut(s)	296, 308, 331, 463, 484, 500, 605, 622
Alw21I	GWGCWC	2 cut(s)	465, 697
Alw26I	GTCTC	3 cut(s)	12, 771, 800
AlwI	GGATC	1 cut(s)	208
Ama87I	CYCGRG	1 cut(s)	374
AoxI	GGCC	2 cut(s)	127, 364
ApeKI	GCWGC	2 cut(s)	167, 587
ApoI	RAATTY	2 cut(s)	275, 475
Asp718I	GGTACC	1 cut(s)	112
AspLEI	GCGC	1 cut(s)	425
AspS9I	GGNCC	1 cut(s)	127
AvaI	CYCGRG	1 cut(s)	374
BaeI	ACNNNNGTAYC	2 cut(s)	420, 453
BanI	GGYRCC	1 cut(s)	112
BanII	GRGCYC	3 cut(s)	28, 38, 465
Bbv12I	GWGCWC	2 cut(s)	465, 697
BbvCI	CCTCAGC	1 cut(s)	485
BbvI	GCAGC	2 cut(s)	179, 574
BceAI	ACGGC	1 cut(s)	455
BcgI	CGANNNNNNTGC	2 cut(s)	449, 483
BciVI	GTATCC	1 cut(s)	421
BclI	TGATCA	1 cut(s)	280
BcoDI	GTCTC	3 cut(s)	12, 771, 800
BfaI	CTAG	1 cut(s)	555
BfmI	CTRYAG	1 cut(s)	408
BfuAI	ACCTGC	1 cut(s)	161
BfuI	GTATCC	1 cut(s)	421
BglII	AGATCT	1 cut(s)	745
BisI	GCNGC	4 cut(s)	83, 130, 168, 588
BlpI	GCTNAGC	2 cut(s)	297, 812
BlsI	GCNGC	4 cut(s)	84, 131, 169, 589
BmeT110I	CYCGRG	1 cut(s)	374
BmgT120I	GGNCC	1 cut(s)	127
BmiI	GGNNCC	3 cut(s)	27, 35, 114
BmsI	GCATC	3 cut(s)	345, 535, 574
BpmI	CTGGAG	1 cut(s)	824
Bpu10I	CCTNAGC	1 cut(s)	485
Bpu1102I	GCTNAGC	2 cut(s)	297, 812
BsaHI	GRCGYC	1 cut(s)	5
BsaJI	CCNNGG	1 cut(s)	29
BsaWI	WCCGGW	1 cut(s)	106
Bsc4I	CCNNNNNNNGG	1 cut(s)	22
Bse1I	ACTGG	1 cut(s)	883
BseDI	CCNNGG	1 cut(s)	29
BseGI	GGATG	2 cut(s)	550, 589
BseLI	CCNNNNNNNGG	1 cut(s)	22
BseMII	CTCAG	4 cut(s)	288, 423, 476, 582
BseNI	ACTGG	1 cut(s)	883
BseRI	GAGGAG	3 cut(s)	18, 392, 653
BseXI	GCAGC	2 cut(s)	179, 574
Bsh1236I	CGCG	1 cut(s)	425
BshFI	GGCC	2 cut(s)	129, 366
BshNI	GGYRCC	1 cut(s)	112
BsiHKAI	GWGCWC	2 cut(s)	465, 697
BsiHKCI	CYCGRG	1 cut(s)	374
BsiSI	CCGG	1 cut(s)	107
BslI	CCNNNNNNNGG	1 cut(s)	22
BsmAI	GTCTC	3 cut(s)	12, 771, 800
BsmBI	CGTCTC	2 cut(s)	12, 800
BsmI	GAATGC	1 cut(s)	400
BsnI	GGCC	2 cut(s)	129, 366
BsoBI	CYCGRG	1 cut(s)	374
Bsp1286I	GDGCHC	4 cut(s)	28, 38, 465, 697
Bsp143I	GATC	3 cut(s)	200, 280, 745
Bsp1720I	GCTNAGC	2 cut(s)	297, 812
BspACI	CCGC	5 cut(s)	82, 85, 130, 425, 634
BspANI	GGCC	2 cut(s)	129, 366
BspCNI	CTCAG	4 cut(s)	289, 424, 477, 583
BspFNI	CGCG	1 cut(s)	425
BspLI	GGNNCC	3 cut(s)	27, 35, 114
BspMAI	CTGCAG	1 cut(s)	412
BspMI	ACCTGC	1 cut(s)	161
BspPI	GGATC	1 cut(s)	208
BspT107I	GGYRCC	1 cut(s)	112
BsrI	ACTGG	1 cut(s)	883
BssECI	CCNNGG	1 cut(s)	29
BssMI	GATC	3 cut(s)	200, 280, 745
BssNI	GRCGYC	1 cut(s)	5
Bst4CI	ACNGT	3 cut(s)	723, 799, 868
Bst6I	CTCTTC	1 cut(s)	504
BstACI	GRCGYC	1 cut(s)	5
BstAPI	GCANNNNNTGC	1 cut(s)	584
BstC8I	GCNNGC	1 cut(s)	603
BstDEI	CTNAG	6 cut(s)	73, 297, 432, 485, 591, 812
BstF5I	GGATG	2 cut(s)	550, 589
BstFNI	CGCG	1 cut(s)	425
BstHHI	GCGC	1 cut(s)	425
BstKTI	GATC	3 cut(s)	203, 283, 748
BstMAI	GTCTC	3 cut(s)	12, 771, 800
BstMBI	GATC	3 cut(s)	200, 280, 745
BstMWI	GCNNNNNNNGC	2 cut(s)	186, 584
BstSFI	CTRYAG	1 cut(s)	408
BstUI	CGCG	1 cut(s)	425
BstV1I	GCAGC	2 cut(s)	179, 574
BstX2I	RGATCY	1 cut(s)	745
BstYI	RGATCY	1 cut(s)	745
BsuI	GTATCC	1 cut(s)	421
BsuRI	GGCC	2 cut(s)	129, 366
BtsCI	GGATG	2 cut(s)	550, 589
BtsI	GCAGTG	1 cut(s)	196
BtsIMutI	CAGTG	2 cut(s)	196, 876
BveI	ACCTGC	1 cut(s)	161
Cac8I	GCNNGC	1 cut(s)	603
CfoI	GCGC	1 cut(s)	425
Cfr13I	GGNCC	1 cut(s)	127
CseI	GACGC	2 cut(s)	173, 817
Csp6I	GTAC	5 cut(s)	113, 174, 703, 724, 869
CviQI	GTAC	5 cut(s)	113, 174, 703, 724, 869
DdeI	CTNAG	6 cut(s)	73, 297, 432, 485, 591, 812
DpnI	GATC	3 cut(s)	202, 282, 747
DpnII	GATC	3 cut(s)	200, 280, 745
Eam1104I	CTCTTC	1 cut(s)	504
EarI	CTCTTC	1 cut(s)	504
EciI	GGCGGA	1 cut(s)	100
Ecl136II	GAGCTC	1 cut(s)	463
Eco24I	GRGCYC	3 cut(s)	28, 38, 465
Eco53kI	GAGCTC	1 cut(s)	463
Eco57I	CTGAAG	1 cut(s)	347
Eco88I	CYCGRG	1 cut(s)	374
EcoICRI	GAGCTC	1 cut(s)	463
EcoT22I	ATGCAT	2 cut(s)	338, 400
EcoT38I	GRGCYC	3 cut(s)	28, 38, 465
Esp3I	CGTCTC	2 cut(s)	12, 800
FaiI	YATR	9 cut(s)	125, 185, 285, 315, 334, 369, 497, 685, 687
FalI	AAGNNNNNCTT	2 cut(s)	501, 533
FauI	CCCGC	1 cut(s)	627
FbaI	TGATCA	1 cut(s)	280
FblI	GTMKAC	2 cut(s)	456, 715
Fnu4HI	GCNGC	4 cut(s)	83, 130, 168, 588
FokI	GGATG	2 cut(s)	557, 596
FriOI	GRGCYC	3 cut(s)	28, 38, 465
Fsp4HI	GCNGC	4 cut(s)	83, 130, 168, 588
FspBI	CTAG	1 cut(s)	555
GlaI	GCGC	1 cut(s)	424
GluI	GCNGC	4 cut(s)	83, 130, 168, 588
GsuI	CTGGAG	1 cut(s)	824
HaeIII	GGCC	2 cut(s)	129, 366
HapII	CCGG	1 cut(s)	107
HgaI	GACGC	2 cut(s)	173, 817
HhaI	GCGC	1 cut(s)	425
Hin1I	GRCGYC	1 cut(s)	5
Hin6I	GCGC	1 cut(s)	423
HinP1I	GCGC	1 cut(s)	423
HincII	GTYRAC	2 cut(s)	457, 855
HindII	GTYRAC	2 cut(s)	457, 855
HindIII	AAGCTT	2 cut(s)	603, 620
HinfI	GANTC	3 cut(s)	530, 712, 764
HpaII	CCGG	1 cut(s)	107
Hpy166II	GTNNAC	5 cut(s)	225, 457, 716, 829, 855
Hpy188I	TCNGA	3 cut(s)	33, 205, 535
Hpy188III	TCNNGA	5 cut(s)	59, 374, 677, 749, 803
Hpy8I	GTNNAC	5 cut(s)	225, 457, 716, 829, 855
Hpy99I	CGWCG	1 cut(s)	461
HpyAV	CCTTC	4 cut(s)	223, 356, 655, 893
HpyCH4III	ACNGT	3 cut(s)	723, 799, 868
HpyCH4V	TGCA	7 cut(s)	336, 349, 398, 410, 601, 653, 844
HpyF10VI	GCNNNNNNNGC	2 cut(s)	186, 584
HpyF3I	CTNAG	6 cut(s)	73, 297, 432, 485, 591, 812
Hsp92I	GRCGYC	1 cut(s)	5
HspAI	GCGC	1 cut(s)	423
KpnI	GGTACC	1 cut(s)	116
Ksp22I	TGATCA	1 cut(s)	280
Kzo9I	GATC	3 cut(s)	200, 280, 745
LmnI	GCTCC	2 cut(s)	31, 33
LpnPI	CCDG	7 cut(s)	7, 120, 156, 335, 662, 788, 864
Lsp1109I	GCAGC	2 cut(s)	179, 574
LweI	GCATC	3 cut(s)	345, 535, 574
MaeI	CTAG	1 cut(s)	555
MaeIII	GTNAC	2 cut(s)	557, 862
MalI	GATC	3 cut(s)	202, 282, 747
MboI	GATC	3 cut(s)	200, 280, 745
MboII	GAAGA	5 cut(s)	245, 283, 521, 539, 794
MflI	RGATCY	1 cut(s)	745
MhlI	GDGCHC	4 cut(s)	28, 38, 465, 697
MluCI	AATT	6 cut(s)	90, 275, 475, 644, 817, 903
MlyI	GAGTC	2 cut(s)	721, 773
MmeI	TCCRAC	1 cut(s)	522
Mph1103I	ATGCAT	2 cut(s)	338, 400
MseI	TTAA	3 cut(s)	156, 263, 891
MslI	CAYNNNNRTG	1 cut(s)	564
MspI	CCGG	1 cut(s)	107
Mva1269I	GAATGC	1 cut(s)	400
MvnI	CGCG	1 cut(s)	425
MwoI	GCNNNNNNNGC	2 cut(s)	186, 584
NdeII	GATC	3 cut(s)	200, 280, 745
NlaIV	GGNNCC	3 cut(s)	27, 35, 114
NmuCI	GTSAC	1 cut(s)	557
NsiI	ATGCAT	2 cut(s)	338, 400
OliI	CACNNNNGTG	1 cut(s)	564
PaeR7I	CTCGAG	1 cut(s)	374
PctI	GAATGC	1 cut(s)	400
PfeI	GAWTC	1 cut(s)	530
PkrI	GCNGC	4 cut(s)	84, 131, 169, 589
PleI	GAGTC	2 cut(s)	720, 772
PpsI	GAGTC	2 cut(s)	720, 772
Psp124BI	GAGCTC	1 cut(s)	465
PspN4I	GGNNCC	3 cut(s)	27, 35, 114
PspPI	GGNCC	1 cut(s)	127
PstI	CTGCAG	1 cut(s)	412
PsuI	RGATCY	1 cut(s)	745
RsaI	GTAC	5 cut(s)	114, 175, 704, 725, 870
RsaNI	GTAC	5 cut(s)	113, 174, 703, 724, 869
RseI	CAYNNNNRTG	1 cut(s)	564
SacI	GAGCTC	1 cut(s)	465
SalI	GTCGAC	1 cut(s)	455
SaqAI	TTAA	3 cut(s)	156, 263, 891
SatI	GCNGC	4 cut(s)	83, 130, 168, 588
Sau3AI	GATC	3 cut(s)	200, 280, 745
Sau96I	GGNCC	1 cut(s)	127
SchI	GAGTC	2 cut(s)	721, 773
SduI	GDGCHC	4 cut(s)	28, 38, 465, 697
SfaNI	GCATC	3 cut(s)	345, 535, 574
SfcI	CTRYAG	1 cut(s)	408
Sfr274I	CTCGAG	1 cut(s)	374
SlaI	CTCGAG	1 cut(s)	374
SmiMI	CAYNNNNRTG	1 cut(s)	564
SmlI	CTYRAG	1 cut(s)	374
SmoI	CTYRAG	1 cut(s)	374
Sse9I	AATT	6 cut(s)	90, 275, 475, 644, 817, 903
SsiI	CCGC	5 cut(s)	82, 85, 130, 425, 634
SspMI	CTAG	1 cut(s)	555
SstI	GAGCTC	1 cut(s)	465
TaaI	ACNGT	3 cut(s)	723, 799, 868
TaqI	TCGA	4 cut(s)	240, 375, 456, 691
TasI	AATT	6 cut(s)	90, 275, 475, 644, 817, 903
TatI	WGTACW	2 cut(s)	702, 723
TauI	GCSGC	2 cut(s)	85, 132
TfiI	GAWTC	1 cut(s)	530
Tru1I	TTAA	3 cut(s)	156, 263, 891
Tru9I	TTAA	3 cut(s)	156, 263, 891
TscAI	CASTG	2 cut(s)	196, 883
TseFI	GTSAC	1 cut(s)	557
TseI	GCWGC	2 cut(s)	167, 587
Tsp45I	GTSAC	1 cut(s)	557
TspDTI	ATGAA	3 cut(s)	78, 458, 657
TspGWI	ACGGA	1 cut(s)	406
TspRI	CASTG	2 cut(s)	196, 883
XapI	RAATTY	2 cut(s)	275, 475
XhoI	CTCGAG	1 cut(s)	374
XmiI	GTMKAC	2 cut(s)	456, 715
XspI	CTAG	1 cut(s)	555
Zsp2I	ATGCAT	2 cut(s)	338, 400

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.