pycom10g26690

Ubiquitin homologues

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr10
OG0014116
Physical Location & Seq
Forward (+)
27952803 .. 27953896
1094 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 891 bp
ATGGATGTTATTTTTGAGCTCCAGAGAGGGAGATCCTTCACAATTGAAGTTGGTTATTTCGACACCGTTCTCGAGATCAAAGAGAAGGTTCAGAAATACCAAGGGATTCCCATTTCCCACCAAACTTTAATCTTCAACGGCCGAGTCCTCGATGATGAACGCAACGTTGAATACTGCGACATCTACAACAATTCCCGCGTCCAACTCCTCGTCGCATCTGAATTCGATAAACCGGTGAACAATAGCAATTGTAATAACAATGTGAAGGCTATGGAGGAGTACTGCCCGAAGAAAATCCAGCTCAACGTGAAGACCCCAACGTCCAAAATGCATGTCCCTATTGAAATGGATGTAAATGACACTGTCTCAAAGCTAAAAGAGAAAATCCAAGCGATGGATCAATCCATTCCACTTAATCGCTTGGTGCTTCATGCAGTTGGGAATGAGTTACATGATCATCGCTCGTTGTGTGAATGCGAGCTTGCGGACAATGCGGAGATAGAGGTGAGCTTGAGACCTTCACCAGCTCCTGCAACCTCACCCGTGTCAATGGGTGGGGCTGGAGTTGGCGGCGGATGTGGAATGGGGTCCAAAAATAAGCTGAAGCTTATGGTCTTGACAAAGTGTGGGACGAAGAAGATTGCGGTGGACGTGAACCCATTGGATAATGTAGGAGAACTGAGGAAGGAGCTGCAGAGGTTGCACCAAAGGCAAATGAATTTTCATTTGCCGCAAGAGAGCTATTTCTTCATCTATAAGCAGAATGTGATGGAGGACGACAGGTCGTTTCGATGGCATCAGGTTGCGCAGGGTGATACTATAGAGATTTTTAATGGTAGCAAGAGGGACAAAGAAAACGTAGAATCAATAACTATCTTGATTGCATGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03320 map03320
Pfam Domains
Protein Families
ubiquitin

Protein Analysis

297

Amino Acids

33.53

Weight (kDa)

6.1

Isoelectric Point (pI)

46.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ubiquitin PF00240 6 - 71 4.2e-18 Ubiquitin family
ubiquitin PF00240 101 - 173 1.6e-10 Ubiquitin family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014116)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G05230 AT4G05240 AT4G05260
fragaria_vesca FvH4_2g19820 FvH4_3g02641
malus_domestica MD05G1341200.v1.1 MD05G1341300.v1.1 MD10G1314800.v1.1
prunus_persica Prupe.4G026000_v2.0.a1
pyrus_communis pycom10g26690
rosa_chinensis RchiOBHm_Chr5g0003951
rosa_multiflora Rmu_sc0000547.1_g000007
rosa_roxburghii Rroxscaffold_1G00072020
rosa_samantha Rh5BG035000 Rh5CG038600 Rh5DG034600
rosa_wichuraiana Rw5G003290

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 319
Acc16I TGCGCA 1 cut(s) 807
AccB7I CCANNNNNTGG 1 cut(s) 394
AccII CGCG 1 cut(s) 198
AciI CCGC 7 cut(s) 196, 485, 494, 570, 573, 644, 731
AclI AACGTT 1 cut(s) 165
AclWI GGATC 2 cut(s) 27, 405
AcoI YGGCCR 1 cut(s) 139
AcsI RAATTY 2 cut(s) 221, 718
AcuI CTGAAG 1 cut(s) 623
AfaI GTAC 1 cut(s) 281
AfiI CCNNNNNNNGG 1 cut(s) 394
AgeI ACCGGT 1 cut(s) 232
AgsI TTSAA 4 cut(s) 47, 136, 170, 344
AhdI GACNNNNNGTC 1 cut(s) 781
AjiI CACGTC 1 cut(s) 652
Alw21I GWGCWC 1 cut(s) 21
Alw26I GTCTC 2 cut(s) 370, 508
AlwI GGATC 2 cut(s) 27, 405
AlwNI CAGNNNCTG 1 cut(s) 530
Ama87I CYCGRG 1 cut(s) 71
AoxI GGCC 1 cut(s) 139
ApeKI GCWGC 1 cut(s) 691
ApoI RAATTY 2 cut(s) 221, 718
ArsI GACNNNNNNTTYG 2 cut(s) 318, 350
AsiGI ACCGGT 1 cut(s) 232
AspLEI GCGC 1 cut(s) 808
AspS9I GGNCC 1 cut(s) 588
AsuHPI GGTGA 5 cut(s) 247, 513, 517, 531, 824
AvaI CYCGRG 1 cut(s) 71
AvaII GGWCC 1 cut(s) 588
BanII GRGCYC 1 cut(s) 21
BbsI GAAGAC 1 cut(s) 317
Bbv12I GWGCWC 1 cut(s) 21
BbvI GCAGC 1 cut(s) 678
BccI CCATC 3 cut(s) 388, 763, 786
BceAI ACGGC 1 cut(s) 154
BclI TGATCA 1 cut(s) 454
BcoDI GTCTC 2 cut(s) 370, 508
BfmI CTRYAG 2 cut(s) 692, 819
BisI GCNGC 3 cut(s) 571, 692, 731
BlsI GCNGC 3 cut(s) 572, 693, 732
BmcAI AGTACT 1 cut(s) 281
Bme18I GGWCC 1 cut(s) 588
BmeRI GACNNNNNGTC 1 cut(s) 781
BmeT110I CYCGRG 1 cut(s) 71
BmgBI CACGTC 1 cut(s) 652
BmgT120I GGNCC 1 cut(s) 588
BmiI GGNNCC 1 cut(s) 589
BmsI GCATC 2 cut(s) 224, 805
BpiI GAAGAC 1 cut(s) 317
BpmI CTGGAG 2 cut(s) 5, 582
BpuEI CTTGAG 1 cut(s) 532
BsaI GGTCTC 1 cut(s) 508
BsaJI CCNNGG 1 cut(s) 100
BsaWI WCCGGW 1 cut(s) 232
Bsc4I CCNNNNNNNGG 1 cut(s) 394
Bse118I RCCGGY 1 cut(s) 232
BseDI CCNNGG 1 cut(s) 100
BseGI GGATG 3 cut(s) 10, 355, 581
BseLI CCNNNNNNNGG 1 cut(s) 394
BseMII CTCAG 1 cut(s) 671
BseRI GAGGAG 2 cut(s) 197, 290
BseX3I CGGCCG 1 cut(s) 139
BseXI GCAGC 1 cut(s) 678
Bsh1236I CGCG 1 cut(s) 198
Bsh1285I CGRYCG 1 cut(s) 142
BshFI GGCC 1 cut(s) 141
BshTI ACCGGT 1 cut(s) 232
BsiEI CGRYCG 1 cut(s) 142
BsiHKAI GWGCWC 1 cut(s) 21
BsiHKCI CYCGRG 1 cut(s) 71
BsiSI CCGG 1 cut(s) 233
BslFI GGGAC 3 cut(s) 320, 643, 860
BslI CCNNNNNNNGG 1 cut(s) 394
BsmAI GTCTC 2 cut(s) 370, 508
BsmFI GGGAC 3 cut(s) 320, 643, 860
BsmI GAATGC 1 cut(s) 479
BsnI GGCC 1 cut(s) 141
Bso31I GGTCTC 1 cut(s) 508
BsoBI CYCGRG 1 cut(s) 71
Bsp1286I GDGCHC 1 cut(s) 21
Bsp143I GATC 4 cut(s) 32, 75, 397, 454
BspACI CCGC 7 cut(s) 196, 485, 494, 570, 573, 644, 731
BspANI GGCC 1 cut(s) 141
BspCNI CTCAG 1 cut(s) 672
BspFNI CGCG 1 cut(s) 198
BspLI GGNNCC 1 cut(s) 589
BspMAI CTGCAG 1 cut(s) 696
BspPI GGATC 2 cut(s) 27, 405
BspTNI GGTCTC 1 cut(s) 508
BsrFI RCCGGY 1 cut(s) 232
BssAI RCCGGY 1 cut(s) 232
BssECI CCNNGG 1 cut(s) 100
BssMI GATC 4 cut(s) 32, 75, 397, 454
BssT1I CCWWGG 1 cut(s) 100
Bst4CI ACNGT 2 cut(s) 67, 364
BstAPI GCANNNNNTGC 1 cut(s) 700
BstC8I GCNNGC 2 cut(s) 479, 483
BstDEI CTNAG 1 cut(s) 680
BstF5I GGATG 3 cut(s) 10, 355, 581
BstFNI CGCG 1 cut(s) 198
BstHHI GCGC 1 cut(s) 808
BstKTI GATC 4 cut(s) 35, 78, 400, 457
BstMAI GTCTC 2 cut(s) 370, 508
BstMBI GATC 4 cut(s) 32, 75, 397, 454
BstMCI CGRYCG 1 cut(s) 142
BstMWI GCNNNNNNNGC 3 cut(s) 491, 700, 709
BstNSI RCATGY 2 cut(s) 335, 888
BstSFI CTRYAG 2 cut(s) 692, 819
BstUI CGCG 1 cut(s) 198
BstV1I GCAGC 1 cut(s) 678
BstV2I GAAGAC 1 cut(s) 317
BstX2I RGATCY 1 cut(s) 32
BstYI RGATCY 1 cut(s) 32
BstZI CGGCCG 1 cut(s) 139
BsuRI GGCC 1 cut(s) 141
BtgZI GCGATG 2 cut(s) 407, 443
BtrI CACGTC 1 cut(s) 652
BtsCI GGATG 3 cut(s) 10, 355, 581
BtsIMutI CAGTG 1 cut(s) 360
Cac8I GCNNGC 2 cut(s) 479, 483
CaiI CAGNNNCTG 1 cut(s) 530
CfoI GCGC 1 cut(s) 808
Cfr10I RCCGGY 1 cut(s) 232
Cfr13I GGNCC 1 cut(s) 588
CseI GACGC 1 cut(s) 187
Csp6I GTAC 1 cut(s) 280
CspAI ACCGGT 1 cut(s) 232
CviAII CATG 4 cut(s) 332, 431, 452, 885
CviQI GTAC 1 cut(s) 280
DdeI CTNAG 1 cut(s) 680
DpnI GATC 4 cut(s) 34, 77, 399, 456
DpnII GATC 4 cut(s) 32, 75, 397, 454
DrdI GACNNNNNNGTC 1 cut(s) 319
DriI GACNNNNNGTC 1 cut(s) 781
DseDI GACNNNNNNGTC 1 cut(s) 319
EaeI YGGCCR 1 cut(s) 139
EagI CGGCCG 1 cut(s) 139
Eam1105I GACNNNNNGTC 1 cut(s) 781
EciI GGCGGA 1 cut(s) 588
Ecl136II GAGCTC 1 cut(s) 19
EclXI CGGCCG 1 cut(s) 139
Eco130I CCWWGG 1 cut(s) 100
Eco24I GRGCYC 1 cut(s) 21
Eco31I GGTCTC 1 cut(s) 508
Eco47I GGWCC 1 cut(s) 588
Eco52I CGGCCG 1 cut(s) 139
Eco53kI GAGCTC 1 cut(s) 19
Eco57I CTGAAG 1 cut(s) 623
Eco88I CYCGRG 1 cut(s) 71
EcoICRI GAGCTC 1 cut(s) 19
EcoRI GAATTC 1 cut(s) 221
EcoT14I CCWWGG 1 cut(s) 100
EcoT22I ATGCAT 1 cut(s) 333
EcoT38I GRGCYC 1 cut(s) 21
ErhI CCWWGG 1 cut(s) 100
FaeI CATG 4 cut(s) 335, 434, 455, 888
FaiI YATR 8 cut(s) 272, 333, 432, 453, 611, 756, 821, 886
FaqI GGGAC 3 cut(s) 320, 643, 860
FatI CATG 4 cut(s) 331, 430, 451, 884
FauI CCCGC 1 cut(s) 203
FbaI TGATCA 1 cut(s) 454
Fnu4HI GCNGC 3 cut(s) 571, 692, 731
FokI GGATG 3 cut(s) 17, 362, 588
FriOI GRGCYC 1 cut(s) 21
Fsp4HI GCNGC 3 cut(s) 571, 692, 731
FspI TGCGCA 1 cut(s) 807
GlaI GCGC 1 cut(s) 807
GluI GCNGC 3 cut(s) 571, 692, 731
GsuI CTGGAG 2 cut(s) 5, 582
HaeIII GGCC 1 cut(s) 141
HapII CCGG 1 cut(s) 233
HgaI GACGC 1 cut(s) 187
HhaI GCGC 1 cut(s) 808
Hin1II CATG 4 cut(s) 335, 434, 455, 888
Hin6I GCGC 1 cut(s) 806
HinP1I GCGC 1 cut(s) 806
HindIII AAGCTT 1 cut(s) 605
HinfI GANTC 3 cut(s) 106, 144, 863
HpaII CCGG 1 cut(s) 233
HphI GGTGA 5 cut(s) 247, 513, 517, 531, 824
Hpy166II GTNNAC 3 cut(s) 238, 649, 655
Hpy188I TCNGA 2 cut(s) 93, 220
Hpy188III TCNNGA 5 cut(s) 22, 71, 73, 616, 877
Hpy8I GTNNAC 3 cut(s) 238, 649, 655
Hpy99I CGWCG 1 cut(s) 215
HpyAV CCTTC 5 cut(s) 46, 79, 259, 528, 679
HpyCH4III ACNGT 2 cut(s) 67, 364
HpyCH4IV ACGT 5 cut(s) 165, 306, 320, 651, 858
HpyCH4V TGCA 6 cut(s) 331, 434, 533, 694, 703, 884
HpyF10VI GCNNNNNNNGC 3 cut(s) 491, 700, 709
HpyF3I CTNAG 1 cut(s) 680
HpySE526I ACGT 5 cut(s) 165, 306, 320, 651, 858
Hsp92II CATG 4 cut(s) 335, 434, 455, 888
HspAI GCGC 1 cut(s) 806
Ksp22I TGATCA 1 cut(s) 454
Kzo9I GATC 4 cut(s) 32, 75, 397, 454
LmnI GCTCC 3 cut(s) 24, 532, 688
LpnPI CCDG 9 cut(s) 35, 246, 311, 537, 543, 546, 766, 785, 794
Lsp1109I GCAGC 1 cut(s) 678
LweI GCATC 2 cut(s) 224, 805
MaeII ACGT 5 cut(s) 165, 306, 320, 651, 858
MaeIII GTNAC 1 cut(s) 447
MalI GATC 4 cut(s) 34, 77, 399, 456
MboI GATC 4 cut(s) 32, 75, 397, 454
MboII GAAGA 6 cut(s) 124, 301, 322, 646, 649, 739
MfeI CAATTG 2 cut(s) 42, 247
MflI RGATCY 1 cut(s) 32
MhlI GDGCHC 1 cut(s) 21
MluCI AATT 5 cut(s) 42, 190, 221, 247, 718
MlyI GAGTC 1 cut(s) 153
MmeI TCCRAC 1 cut(s) 226
Mph1103I ATGCAT 1 cut(s) 333
MseI TTAA 3 cut(s) 128, 414, 831
MspI CCGG 1 cut(s) 233
MunI CAATTG 2 cut(s) 42, 247
Mva1269I GAATGC 1 cut(s) 479
MvnI CGCG 1 cut(s) 198
MwoI GCNNNNNNNGC 3 cut(s) 491, 700, 709
NdeII GATC 4 cut(s) 32, 75, 397, 454
NlaIII CATG 4 cut(s) 335, 434, 455, 888
NlaIV GGNNCC 1 cut(s) 589
NmeAIII GCCGAG 1 cut(s) 167
NsbI TGCGCA 1 cut(s) 807
NsiI ATGCAT 1 cut(s) 333
NspI RCATGY 2 cut(s) 335, 888
PaeR7I CTCGAG 1 cut(s) 71
PctI GAATGC 1 cut(s) 479
PfeI GAWTC 2 cut(s) 106, 863
PflFI GACNNNGTC 1 cut(s) 362
PflMI CCANNNNNTGG 1 cut(s) 394
PinAI ACCGGT 1 cut(s) 232
PkrI GCNGC 3 cut(s) 572, 693, 732
PleI GAGTC 1 cut(s) 152
PpsI GAGTC 1 cut(s) 152
Psp124BI GAGCTC 1 cut(s) 21
Psp1406I AACGTT 1 cut(s) 165
PspN4I GGNNCC 1 cut(s) 589
PspPI GGNCC 1 cut(s) 588
PstI CTGCAG 1 cut(s) 696
PstNI CAGNNNCTG 1 cut(s) 530
PsuI RGATCY 1 cut(s) 32
PsyI GACNNNGTC 1 cut(s) 362
RsaI GTAC 1 cut(s) 281
RsaNI GTAC 1 cut(s) 280
SacI GAGCTC 1 cut(s) 21
SaqAI TTAA 3 cut(s) 128, 414, 831
SatI GCNGC 3 cut(s) 571, 692, 731
Sau3AI GATC 4 cut(s) 32, 75, 397, 454
Sau96I GGNCC 1 cut(s) 588
ScaI AGTACT 1 cut(s) 281
SchI GAGTC 1 cut(s) 153
SduI GDGCHC 1 cut(s) 21
SfaNI GCATC 2 cut(s) 224, 805
SfcI CTRYAG 2 cut(s) 692, 819
Sfr274I CTCGAG 1 cut(s) 71
SinI GGWCC 1 cut(s) 588
SlaI CTCGAG 1 cut(s) 71
SmlI CTYRAG 2 cut(s) 71, 511
SmoI CTYRAG 2 cut(s) 71, 511
Sse9I AATT 5 cut(s) 42, 190, 221, 247, 718
SsiI CCGC 7 cut(s) 196, 485, 494, 570, 573, 644, 731
SstI GAGCTC 1 cut(s) 21
StyI CCWWGG 1 cut(s) 100
TaaI ACNGT 2 cut(s) 67, 364
TaiI ACGT 5 cut(s) 168, 309, 323, 654, 861
TaqI TCGA 5 cut(s) 60, 72, 150, 225, 790
TasI AATT 5 cut(s) 42, 190, 221, 247, 718
TatI WGTACW 1 cut(s) 279
TauI GCSGC 2 cut(s) 573, 733
TfiI GAWTC 2 cut(s) 106, 863
Tru1I TTAA 3 cut(s) 128, 414, 831
Tru9I TTAA 3 cut(s) 128, 414, 831
TscAI CASTG 1 cut(s) 367
TseI GCWGC 1 cut(s) 691
TspDTI ATGAA 5 cut(s) 171, 419, 713, 731, 739
TspRI CASTG 1 cut(s) 367
Tth111I GACNNNGTC 1 cut(s) 362
Van91I CCANNNNNTGG 1 cut(s) 394
VpaK11BI GGWCC 1 cut(s) 588
XapI RAATTY 2 cut(s) 221, 718
XceI RCATGY 2 cut(s) 335, 888
XhoI CTCGAG 1 cut(s) 71
ZrmI AGTACT 1 cut(s) 281
Zsp2I ATGCAT 1 cut(s) 333
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.