pycom10g28480

Auxin-induced in root cultures protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr10
OG0012068
Physical Location & Seq
Reverse (-)
29076016 .. 29077394
1379 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 756 bp
ATGAGATCGATCATATTTGCAACCTGGGCGCTCCCTACCAATTCCACCACCATTCTTCAGGTCTGGCAGGAGGGACCTGTTTCGAGTGGCGCTCCTGGCATTCACAGCACTGTCGCCGCCAATCTTAACGCCAAGGGGACTTTGAATTTGCTTTCCGGCGAGACAGCATCCACCGGCAGTGGCAGCTCAACCACTAGAAAGAAAAACATTCACGGAGTGCTGAATGTAGTGAGCTGGGGAATCTTGATGCCTCTTGGTGCCATGGTAGCAAGGTACTTGAGGGTTTTCAAGTCCGCAGACCCTGCATGGTTTTATCTTCATGCCGCTTGCCAGACCTCGGCATACGCCGTTGGGGTCGCAGGATGGGCCACTGGTCTTAAACTCGGTAGCGATTCTGCCGGCGTCCAATATGACACGCACAGAAACATTGGGATCACCCTCTTCGCCCTTGGAACGCTTCAGGTGTTCGCTTTGCTTCTGAGACCCAACAAGGATCACAAGTTCAGATTCTACTGGAACATGTACCACCATGCAACCGGGTACGCTGTTATCATCCTTAGCATCGTCAACATCTTCGAAGGATTGGACATCTTGAAGCCTAACAAGAACTGGAAGAATGCATACATCGGCTTGATCATTGCTTTCGCTGTCCAGGCTGCATTGTTGGAGGCTTACACATGGTATGTTGTATTGAAGAGGAAGAAGTCTGAAAAGCCAACGCATGCTGCGAACGGTGTCAACGGCTATGGTGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cytochrom_B561 DUF568

Protein Analysis

252

Amino Acids

27.23

Weight (kDa)

9.83

Isoelectric Point (pI)

31.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF568 PF04526 4 - 50 9.8e-11 Protein of unknown function (DUF568)
Cytochrom_B561 PF03188 70 - 195 1.1e-07 Eukaryotic cytochrome b561
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012068)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G17280 AT5G47530
fragaria_vesca FvH4_3g00780 FvH4_3g00780
malus_domestica MD05G1359500.v1.1 MD10G1335000.v1.1
prunus_persica Prupe.4G008600_v2.0.a1
pyrus_communis pycom10g28480
rosa_chinensis RchiOBHm_Chr5g0001021
rosa_laevigata RLG00000030914
rosa_multiflora Rmu_sc0000255.1_g000030 Rmu_sc0004189.1_g000001
rosa_roxburghii Rroxscaffold_1G00075260
rosa_rugosa Rorug04G0389000
rosa_samantha Rh5AG008200 Rh5BG010300 Rh5CG008900 Rh5DG009000
rosa_wichuraiana Rw5G000840

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 257
AciI CCGC 3 cut(s) 117, 294, 324
AclWI GGATC 2 cut(s) 440, 501
AcsI RAATTY 1 cut(s) 145
AcuI CTGAAG 2 cut(s) 41, 443
AcyI GRCGYC 1 cut(s) 402
AdeI CACNNNGTG 1 cut(s) 217
AfaI GTAC 3 cut(s) 275, 524, 542
AfiI CCNNNNNNNGG 1 cut(s) 337
AflIII ACRYGT 1 cut(s) 519
AgsI TTSAA 4 cut(s) 145, 289, 595, 694
AjnI CCWGG 3 cut(s) 23, 94, 651
AloI GAACNNNNNNTCC 2 cut(s) 485, 517
AluBI AGCT 2 cut(s) 186, 234
AluI AGCT 2 cut(s) 186, 234
Alw26I GTCTC 2 cut(s) 155, 475
AlwI GGATC 2 cut(s) 440, 501
AlwNI CAGNNNCTG 1 cut(s) 302
AoxI GGCC 1 cut(s) 366
ApeKI GCWGC 3 cut(s) 183, 656, 725
ApoI RAATTY 1 cut(s) 145
ArsI GACNNNNNNTTYG 2 cut(s) 130, 162
AspLEI GCGC 2 cut(s) 31, 92
AspS9I GGNCC 2 cut(s) 74, 366
AsuC2I CCSGG 1 cut(s) 538
AsuHPI GGTGA 1 cut(s) 427
AsuII TTCGAA 1 cut(s) 576
AvaII GGWCC 1 cut(s) 74
BanI GGYRCC 1 cut(s) 257
BarI GAAGNNNNNNTAC 2 cut(s) 605, 637
BbvI GCAGC 3 cut(s) 195, 643, 712
BccI CCATC 1 cut(s) 357
BceAI ACGGC 1 cut(s) 332
BciT130I CCWGG 3 cut(s) 25, 96, 653
BclI TGATCA 1 cut(s) 633
BcnI CCSGG 1 cut(s) 538
BcoDI GTCTC 2 cut(s) 155, 475
BfaI CTAG 1 cut(s) 195
BfoI RGCGCY 2 cut(s) 32, 93
BisI GCNGC 5 cut(s) 117, 184, 324, 657, 726
BlsI GCNGC 5 cut(s) 118, 185, 325, 658, 727
Bme1390I CCNGG 4 cut(s) 25, 96, 538, 653
Bme18I GGWCC 1 cut(s) 74
BmgT120I GGNCC 2 cut(s) 74, 366
BmiI GGNNCC 2 cut(s) 75, 259
BmrFI CCNGG 4 cut(s) 25, 96, 538, 653
BmsI GCATC 3 cut(s) 176, 237, 570
BplI GAGNNNNNCTC 2 cut(s) 76, 108
Bpu10I CCTNAGC 1 cut(s) 557
Bpu14I TTCGAA 1 cut(s) 576
BpuEI CTTGAG 1 cut(s) 298
BpuMI CCSGG 1 cut(s) 538
Bsa29I ATCGAT 1 cut(s) 8
BsaHI GRCGYC 1 cut(s) 402
BsaI GGTCTC 1 cut(s) 475
BsaJI CCNNGG 5 cut(s) 24, 132, 261, 336, 448
Bsc4I CCNNNNNNNGG 1 cut(s) 337
Bse118I RCCGGY 2 cut(s) 173, 398
Bse1I ACTGG 3 cut(s) 376, 518, 614
Bse3DI GCAATG 1 cut(s) 636
BseBI CCWGG 3 cut(s) 25, 96, 653
BseCI ATCGAT 1 cut(s) 8
BseDI CCNNGG 5 cut(s) 24, 132, 261, 336, 448
BseGI GGATG 3 cut(s) 167, 368, 552
BseLI CCNNNNNNNGG 1 cut(s) 337
BseMI GCAATG 1 cut(s) 636
BseMII CTCAG 1 cut(s) 470
BseNI ACTGG 3 cut(s) 376, 518, 614
BseXI GCAGC 3 cut(s) 195, 643, 712
BseYI CCCAGC 1 cut(s) 234
BshFI GGCC 1 cut(s) 368
BshNI GGYRCC 1 cut(s) 257
BshVI ATCGAT 1 cut(s) 8
BsiSI CCGG 4 cut(s) 156, 174, 399, 537
BslFI GGGAC 2 cut(s) 87, 151
BslI CCNNNNNNNGG 1 cut(s) 337
BsmAI GTCTC 2 cut(s) 155, 475
BsmFI GGGAC 2 cut(s) 87, 151
BsmI GAATGC 2 cut(s) 99, 622
BsnI GGCC 1 cut(s) 368
Bso31I GGTCTC 1 cut(s) 475
Bsp119I TTCGAA 1 cut(s) 576
Bsp143I GATC 5 cut(s) 5, 9, 432, 493, 633
Bsp19I CCATGG 1 cut(s) 261
BspACI CCGC 3 cut(s) 117, 294, 324
BspANI GGCC 1 cut(s) 368
BspCNI CTCAG 1 cut(s) 471
BspDI ATCGAT 1 cut(s) 8
BspLI GGNNCC 2 cut(s) 75, 259
BspPI GGATC 2 cut(s) 440, 501
BspT104I TTCGAA 1 cut(s) 576
BspT107I GGYRCC 1 cut(s) 257
BspTNI GGTCTC 1 cut(s) 475
BsrDI GCAATG 1 cut(s) 636
BsrFI RCCGGY 2 cut(s) 173, 398
BsrI ACTGG 3 cut(s) 376, 518, 614
BssAI RCCGGY 2 cut(s) 173, 398
BssECI CCNNGG 5 cut(s) 24, 132, 261, 336, 448
BssMI GATC 5 cut(s) 5, 9, 432, 493, 633
BssNI GRCGYC 1 cut(s) 402
BssT1I CCWWGG 3 cut(s) 132, 261, 448
Bst2UI CCWGG 3 cut(s) 25, 96, 653
Bst4CI ACNGT 2 cut(s) 112, 734
Bst6I CTCTTC 2 cut(s) 446, 689
BstACI GRCGYC 1 cut(s) 402
BstAPI GCANNNNNTGC 1 cut(s) 302
BstBI TTCGAA 1 cut(s) 576
BstC8I GCNNGC 3 cut(s) 328, 400, 723
BstDEI CTNAG 3 cut(s) 479, 557, 753
BstDSI CCRYGG 1 cut(s) 261
BstF5I GGATG 3 cut(s) 167, 368, 552
BstH2I RGCGCY 2 cut(s) 32, 93
BstHHI GCGC 2 cut(s) 31, 92
BstKTI GATC 5 cut(s) 8, 12, 435, 496, 636
BstMAI GTCTC 2 cut(s) 155, 475
BstMBI GATC 5 cut(s) 5, 9, 432, 493, 633
BstMWI GCNNNNNNNGC 8 cut(s) 26, 96, 105, 183, 266, 302, 365, 653
BstNI CCWGG 3 cut(s) 25, 96, 653
BstNSI RCATGY 2 cut(s) 523, 725
BstSCI CCNGG 4 cut(s) 23, 94, 536, 651
BstV1I GCAGC 3 cut(s) 195, 643, 712
Bsu15I ATCGAT 1 cut(s) 8
BsuRI GGCC 1 cut(s) 368
BsuTUI ATCGAT 1 cut(s) 8
BtgI CCRYGG 1 cut(s) 261
BtsCI GGATG 3 cut(s) 167, 368, 552
BtsI GCAGTG 1 cut(s) 184
BtsIMutI CAGTG 3 cut(s) 108, 184, 369
Cac8I GCNNGC 3 cut(s) 328, 400, 723
CaiI CAGNNNCTG 1 cut(s) 302
CfoI GCGC 2 cut(s) 31, 92
Cfr10I RCCGGY 2 cut(s) 173, 398
Cfr13I GGNCC 2 cut(s) 74, 366
ClaI ATCGAT 1 cut(s) 8
CseI GACGC 1 cut(s) 391
Csp6I GTAC 3 cut(s) 274, 523, 541
CviAII CATG 7 cut(s) 262, 306, 320, 520, 530, 678, 722
CviJI RGCY 9 cut(s) 186, 234, 368, 598, 630, 656, 671, 715, 744
CviKI_1 RGCY 9 cut(s) 186, 234, 368, 598, 630, 656, 671, 715, 744
CviQI GTAC 3 cut(s) 274, 523, 541
DdeI CTNAG 3 cut(s) 479, 557, 753
DpnI GATC 5 cut(s) 7, 11, 434, 495, 635
DpnII GATC 5 cut(s) 5, 9, 432, 493, 633
DraIII CACNNNGTG 1 cut(s) 217
Eam1104I CTCTTC 2 cut(s) 446, 689
EarI CTCTTC 2 cut(s) 446, 689
Eco130I CCWWGG 3 cut(s) 132, 261, 448
Eco31I GGTCTC 1 cut(s) 475
Eco47I GGWCC 1 cut(s) 74
Eco57I CTGAAG 2 cut(s) 41, 443
EcoO109I RGGNCCY 1 cut(s) 74
EcoRII CCWGG 3 cut(s) 23, 94, 651
EcoT14I CCWWGG 3 cut(s) 132, 261, 448
EcoT22I ATGCAT 1 cut(s) 622
ErhI CCWWGG 3 cut(s) 132, 261, 448
FaeI CATG 7 cut(s) 265, 309, 323, 523, 533, 681, 725
FaqI GGGAC 2 cut(s) 87, 151
FatI CATG 7 cut(s) 261, 305, 319, 519, 529, 677, 721
FbaI TGATCA 1 cut(s) 633
Fnu4HI GCNGC 5 cut(s) 117, 184, 324, 657, 726
FokI GGATG 3 cut(s) 154, 375, 539
Fsp4HI GCNGC 5 cut(s) 117, 184, 324, 657, 726
FspBI CTAG 1 cut(s) 195
GlaI GCGC 2 cut(s) 30, 91
GluI GCNGC 5 cut(s) 117, 184, 324, 657, 726
GsaI CCCAGC 1 cut(s) 238
HaeII RGCGCY 2 cut(s) 32, 93
HaeIII GGCC 1 cut(s) 368
HapII CCGG 4 cut(s) 156, 174, 399, 537
HgaI GACGC 1 cut(s) 391
HhaI GCGC 2 cut(s) 31, 92
Hin1I GRCGYC 1 cut(s) 402
Hin1II CATG 7 cut(s) 265, 309, 323, 523, 533, 681, 725
Hin6I GCGC 2 cut(s) 29, 90
HinP1I GCGC 2 cut(s) 29, 90
HincII GTYRAC 2 cut(s) 568, 739
HindII GTYRAC 2 cut(s) 568, 739
HinfI GANTC 3 cut(s) 240, 392, 507
HpaII CCGG 4 cut(s) 156, 174, 399, 537
HphI GGTGA 1 cut(s) 427
Hpy166II GTNNAC 2 cut(s) 568, 739
Hpy188I TCNGA 3 cut(s) 480, 506, 709
Hpy188III TCNNGA 2 cut(s) 244, 592
Hpy8I GTNNAC 2 cut(s) 568, 739
HpyAV CCTTC 1 cut(s) 572
HpyCH4III ACNGT 2 cut(s) 112, 734
HpyCH4V TGCA 5 cut(s) 20, 305, 533, 620, 659
HpyF10VI GCNNNNNNNGC 8 cut(s) 26, 96, 105, 183, 266, 302, 365, 653
HpyF3I CTNAG 3 cut(s) 479, 557, 753
Hsp92I GRCGYC 1 cut(s) 402
Hsp92II CATG 7 cut(s) 265, 309, 323, 523, 533, 681, 725
HspAI GCGC 2 cut(s) 29, 90
KroI GCCGGC 1 cut(s) 398
KroNI GCCGGC 1 cut(s) 400
Ksp22I TGATCA 1 cut(s) 633
Kzo9I GATC 5 cut(s) 5, 9, 432, 493, 633
LmnI GCTCC 2 cut(s) 36, 97
Lsp1109I GCAGC 3 cut(s) 195, 643, 712
LweI GCATC 3 cut(s) 176, 237, 570
MaeI CTAG 1 cut(s) 195
MalI GATC 5 cut(s) 7, 11, 434, 495, 635
MboI GATC 5 cut(s) 5, 9, 432, 493, 633
MboII GAAGA 7 cut(s) 47, 308, 433, 565, 625, 706, 712
MluCI AATT 2 cut(s) 40, 145
MmeI TCCRAC 1 cut(s) 645
MnlI CCTC 7 cut(s) 64, 261, 273, 346, 449, 661, 690
Mph1103I ATGCAT 1 cut(s) 622
MroNI GCCGGC 1 cut(s) 398
MseI TTAA 2 cut(s) 126, 378
MspI CCGG 4 cut(s) 156, 174, 399, 537
MspR9I CCNGG 4 cut(s) 25, 96, 538, 653
Mva1269I GAATGC 2 cut(s) 99, 622
MvaI CCWGG 3 cut(s) 25, 96, 653
MwoI GCNNNNNNNGC 8 cut(s) 26, 96, 105, 183, 266, 302, 365, 653
NaeI GCCGGC 1 cut(s) 400
NciI CCSGG 1 cut(s) 538
NcoI CCATGG 1 cut(s) 261
NdeII GATC 5 cut(s) 5, 9, 432, 493, 633
NgoMIV GCCGGC 1 cut(s) 398
NlaIII CATG 7 cut(s) 265, 309, 323, 523, 533, 681, 725
NlaIV GGNNCC 2 cut(s) 75, 259
NmeAIII GCCGAG 1 cut(s) 317
NsiI ATGCAT 1 cut(s) 622
NspI RCATGY 2 cut(s) 523, 725
NspV TTCGAA 1 cut(s) 576
PaeI GCATGC 1 cut(s) 725
PciI ACATGT 1 cut(s) 519
PcsI WCGNNNNNNNCGW 1 cut(s) 725
PctI GAATGC 2 cut(s) 99, 622
PdiI GCCGGC 1 cut(s) 400
PfeI GAWTC 3 cut(s) 240, 392, 507
PkrI GCNGC 5 cut(s) 118, 185, 325, 658, 727
PpuMI RGGWCCY 1 cut(s) 74
PscI ACATGT 1 cut(s) 519
Psp5II RGGWCCY 1 cut(s) 74
Psp6I CCWGG 3 cut(s) 23, 94, 651
PspFI CCCAGC 1 cut(s) 234
PspGI CCWGG 3 cut(s) 23, 94, 651
PspN4I GGNNCC 2 cut(s) 75, 259
PspPI GGNCC 2 cut(s) 74, 366
PspPPI RGGWCCY 1 cut(s) 74
PstNI CAGNNNCTG 1 cut(s) 302
RsaI GTAC 3 cut(s) 275, 524, 542
RsaNI GTAC 3 cut(s) 274, 523, 541
SaqAI TTAA 2 cut(s) 126, 378
SatI GCNGC 5 cut(s) 117, 184, 324, 657, 726
Sau3AI GATC 5 cut(s) 5, 9, 432, 493, 633
Sau96I GGNCC 2 cut(s) 74, 366
ScrFI CCNGG 4 cut(s) 25, 96, 538, 653
SetI ASST 8 cut(s) 26, 63, 79, 188, 236, 275, 338, 465
SfaNI GCATC 3 cut(s) 176, 237, 570
SfuI TTCGAA 1 cut(s) 576
SinI GGWCC 1 cut(s) 74
SmlI CTYRAG 1 cut(s) 277
SmoI CTYRAG 1 cut(s) 277
SphI GCATGC 1 cut(s) 725
Sse9I AATT 2 cut(s) 40, 145
SsiI CCGC 3 cut(s) 117, 294, 324
SspMI CTAG 1 cut(s) 195
StyD4I CCNGG 4 cut(s) 23, 94, 536, 651
StyI CCWWGG 3 cut(s) 132, 261, 448
TaaI ACNGT 2 cut(s) 112, 734
TaqI TCGA 3 cut(s) 8, 83, 576
TasI AATT 2 cut(s) 40, 145
TauI GCSGC 2 cut(s) 119, 326
TfiI GAWTC 3 cut(s) 240, 392, 507
Tru1I TTAA 2 cut(s) 126, 378
Tru9I TTAA 2 cut(s) 126, 378
TscAI CASTG 3 cut(s) 115, 184, 376
TseI GCWGC 3 cut(s) 183, 656, 725
TspDTI ATGAA 1 cut(s) 308
TspGWI ACGGA 1 cut(s) 228
TspRI CASTG 3 cut(s) 115, 184, 376
VpaK11BI GGWCC 1 cut(s) 74
XapI RAATTY 1 cut(s) 145
XceI RCATGY 2 cut(s) 523, 725
XspI CTAG 1 cut(s) 195
Zsp2I ATGCAT 1 cut(s) 622
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.