pycom10g28600

PLASMODESMATA CALLOSE-BINDING PROTEIN 5-like

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr10
Physical Location & Seq
Reverse (-)
29147469 .. 29148037
569 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom10g28600.2

Sequence Viewer

Length: 300 bp
ATGAAATTAGATGGGCAGCTAGATCCGGATTGGTGCATAGCAGATGAGCAGACACCCGATGAGGATCTGCAAATGGCGATGAAGTGGGCTTGTGAAGTGGGAGGAGCCGACTGCAGCAAGATACAAGAAAACCAAGACTGCTACTTACCTAATACCATGCAGGACCACGCCTCTTATGTCTTCAACAATTACTACCAAAGATTTAAGAAGCAAGGAGGAACTTGCTACTTCAATTCTGCTGCATTGGTCACGGCCCTTGATCCAAGTCATAATTCGTGCAAGTTTGAGTATCTTCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

100

Amino Acids

11.3

Weight (kDa)

4.38

Isoelectric Point (pI)

32.45

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 25
AclWI GGATC 3 cut(s) 17, 72, 254
AgsI TTSAA 2 cut(s) 184, 232
AjuI GAANNNNNNNTTGG 2 cut(s) 256, 288
AluBI AGCT 1 cut(s) 19
AluI AGCT 1 cut(s) 19
AlwI GGATC 3 cut(s) 17, 72, 254
Aor13HI TCCGGA 1 cut(s) 25
AoxI GGCC 1 cut(s) 252
ApeKI GCWGC 3 cut(s) 16, 114, 239
AspS9I GGNCC 2 cut(s) 163, 253
AvaII GGWCC 1 cut(s) 163
BbsI GAAGAC 1 cut(s) 172
BbvI GCAGC 3 cut(s) 28, 126, 226
BccI CCATC 1 cut(s) 5
BceAI ACGGC 1 cut(s) 267
BfaI CTAG 1 cut(s) 20
BfmI CTRYAG 1 cut(s) 112
BisI GCNGC 3 cut(s) 17, 115, 240
BlsI GCNGC 3 cut(s) 18, 116, 241
Bme18I GGWCC 1 cut(s) 163
BmgT120I GGNCC 2 cut(s) 163, 253
BmiI GGNNCC 1 cut(s) 106
BpiI GAAGAC 1 cut(s) 172
BsaBI GATNNNNATC 1 cut(s) 63
BsaWI WCCGGW 1 cut(s) 25
Bse8I GATNNNNATC 1 cut(s) 63
BseAI TCCGGA 1 cut(s) 25
BseJI GATNNNNATC 1 cut(s) 63
BseRI GAGGAG 1 cut(s) 117
BseXI GCAGC 3 cut(s) 28, 126, 226
BshFI GGCC 1 cut(s) 254
BsiSI CCGG 1 cut(s) 26
BsnI GGCC 1 cut(s) 254
Bsp13I TCCGGA 1 cut(s) 25
Bsp143I GATC 3 cut(s) 22, 64, 259
BspANI GGCC 1 cut(s) 254
BspEI TCCGGA 1 cut(s) 25
BspLI GGNNCC 1 cut(s) 106
BspMAI CTGCAG 1 cut(s) 116
BspPI GGATC 3 cut(s) 17, 72, 254
BssMI GATC 3 cut(s) 22, 64, 259
BstKTI GATC 3 cut(s) 25, 67, 262
BstMBI GATC 3 cut(s) 22, 64, 259
BstSFI CTRYAG 1 cut(s) 112
BstV1I GCAGC 3 cut(s) 28, 126, 226
BstV2I GAAGAC 1 cut(s) 172
BstX2I RGATCY 2 cut(s) 22, 64
BstYI RGATCY 2 cut(s) 22, 64
BsuRI GGCC 1 cut(s) 254
BtgZI GCGATG 1 cut(s) 92
Cfr13I GGNCC 2 cut(s) 163, 253
CviAII CATG 1 cut(s) 157
CviJI RGCY 4 cut(s) 19, 89, 107, 254
CviKI_1 RGCY 4 cut(s) 19, 89, 107, 254
DpnI GATC 3 cut(s) 24, 66, 261
DpnII GATC 3 cut(s) 22, 64, 259
Eco47I GGWCC 1 cut(s) 163
FaeI CATG 1 cut(s) 160
FaiI YATR 4 cut(s) 38, 158, 177, 270
FatI CATG 1 cut(s) 156
Fnu4HI GCNGC 3 cut(s) 17, 115, 240
Fsp4HI GCNGC 3 cut(s) 17, 115, 240
FspBI CTAG 1 cut(s) 20
GluI GCNGC 3 cut(s) 17, 115, 240
HaeIII GGCC 1 cut(s) 254
HapII CCGG 1 cut(s) 26
Hin1II CATG 1 cut(s) 160
HpaII CCGG 1 cut(s) 26
Hpy188III TCNNGA 1 cut(s) 26
HpyCH4V TGCA 6 cut(s) 36, 70, 114, 160, 242, 279
Hsp92II CATG 1 cut(s) 160
Kpn2I TCCGGA 1 cut(s) 25
Kzo9I GATC 3 cut(s) 22, 64, 259
LmnI GCTCC 1 cut(s) 104
LpnPI CCDG 2 cut(s) 39, 146
Lsp1109I GCAGC 3 cut(s) 28, 126, 226
MaeI CTAG 1 cut(s) 20
MaeIII GTNAC 1 cut(s) 247
MalI GATC 3 cut(s) 24, 66, 261
MboI GATC 3 cut(s) 22, 64, 259
MboII GAAGA 2 cut(s) 172, 284
MflI RGATCY 2 cut(s) 22, 64
MluCI AATT 4 cut(s) 5, 187, 232, 271
MnlI CCTC 4 cut(s) 55, 95, 181, 209
MroI TCCGGA 1 cut(s) 25
MseI TTAA 1 cut(s) 204
MspI CCGG 1 cut(s) 26
NdeII GATC 3 cut(s) 22, 64, 259
NlaIII CATG 1 cut(s) 160
NlaIV GGNNCC 1 cut(s) 106
NmuCI GTSAC 1 cut(s) 247
PkrI GCNGC 3 cut(s) 18, 116, 241
PspN4I GGNNCC 1 cut(s) 106
PspPI GGNCC 2 cut(s) 163, 253
PstI CTGCAG 1 cut(s) 116
PsuI RGATCY 2 cut(s) 22, 64
SaqAI TTAA 1 cut(s) 204
SatI GCNGC 3 cut(s) 17, 115, 240
Sau3AI GATC 3 cut(s) 22, 64, 259
Sau96I GGNCC 2 cut(s) 163, 253
SetI ASST 2 cut(s) 21, 151
SfcI CTRYAG 1 cut(s) 112
SinI GGWCC 1 cut(s) 163
Sse9I AATT 4 cut(s) 5, 187, 232, 271
SspMI CTAG 1 cut(s) 20
TasI AATT 4 cut(s) 5, 187, 232, 271
Tru1I TTAA 1 cut(s) 204
Tru9I TTAA 1 cut(s) 204
TseFI GTSAC 1 cut(s) 247
TseI GCWGC 3 cut(s) 16, 114, 239
Tsp45I GTSAC 1 cut(s) 247
TspDTI ATGAA 2 cut(s) 17, 95
VpaK11BI GGWCC 1 cut(s) 163
XspI CTAG 1 cut(s) 20
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.