Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8338671.1

Orthogroup ID

OG0011532

Physical Location & Seq

Genomic Coordinates Forward (+)

231 .. 672

Gene Structure 442 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8338671.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 348 bp

atgccatcaagatttctatggcttctgctagctctgctgtgtttagccctaacaccacgaagatctggtggacagttagaggaatggtgcatagctgataagcagaccccggcggacgagctaaagatggcacttgattgggcttgtgagaagggaggtgcagactgcagtaagatacaagagaaccaagcttgctacttgcctaatactctggagcaccatgcctcttatgctttcaacaattactatcaaaagttcaagcaggaaggtgcaacatgttacttcaatgctgctgcatttgtcactgcccttgatccaagtaatataattctgaagatacactactga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00500 map00500

Pfam Domains

Protein Families

Protein Analysis

115

Amino Acids

13.02

Weight (kDa)

5.85

Isoelectric Point (pI)

57.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011532)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g00570 FvH4_3g00570
malus_domestica	MD00G1058100.v1.1 MD10G1336600.v1.1
prunus_persica	Prupe.4G006900_v2.0.a1
pyrus_communis	pycom05g32600 pycom10g28600
rosa_chinensis	RchiOBHm_Chr5g0000771
rosa_laevigata	RLG00000030895
rosa_multiflora	Rmu_co8338671.1_g000001 Rmu_sc0000255.1_g000008 Rmu_sc0011992.1_g000002
rosa_roxburghii	Rroxscaffold_1G00075450
rosa_rugosa	Rorug04G0386400 Rorug04G0386500
rosa_samantha	Rh5AG006400 Rh5BG008300 Rh5CG007000 Rh5DG007000
rosa_wichuraiana	Rw5G000660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	113
AclWI	GGATC	1 cut(s)	308
AflIII	ACRYGT	1 cut(s)	275
AgsI	TTSAA	3 cut(s)	238, 259, 286
AluBI	AGCT	4 cut(s)	32, 95, 121, 191
AluI	AGCT	4 cut(s)	32, 95, 121, 191
Alw21I	GWGCWC	1 cut(s)	219
AlwI	GGATC	1 cut(s)	308
ApeKI	GCWGC	2 cut(s)	290, 293
AsuC2I	CCSGG	1 cut(s)	110
AsuNHI	GCTAGC	1 cut(s)	28
BarI	GAAGNNNNNNTAC	1 cut(s)	326
Bbv12I	GWGCWC	1 cut(s)	219
BbvI	GCAGC	2 cut(s)	277, 280
BccI	CCATC	2 cut(s)	13, 121
BcnI	CCSGG	1 cut(s)	110
BfaI	CTAG	1 cut(s)	29
BfmI	CTRYAG	1 cut(s)	166
BglII	AGATCT	1 cut(s)	62
BisI	GCNGC	2 cut(s)	291, 294
BlsI	GCNGC	2 cut(s)	292, 295
Bme1390I	CCNGG	1 cut(s)	110
BmrFI	CCNGG	1 cut(s)	110
BmtI	GCTAGC	1 cut(s)	32
BpmI	CTGGAG	1 cut(s)	233
BpuMI	CCSGG	1 cut(s)	110
BsaJI	CCNNGG	1 cut(s)	108
BseDI	CCNNGG	1 cut(s)	108
BseXI	GCAGC	2 cut(s)	277, 280
BsgI	GTGCAG	1 cut(s)	180
BsiHKAI	GWGCWC	1 cut(s)	219
BsiSI	CCGG	1 cut(s)	110
Bsp1286I	GDGCHC	1 cut(s)	219
Bsp143I	GATC	2 cut(s)	62, 313
BspACI	CCGC	1 cut(s)	113
BspMAI	CTGCAG	1 cut(s)	170
BspOI	GCTAGC	1 cut(s)	32
BspPI	GGATC	1 cut(s)	308
BssECI	CCNNGG	1 cut(s)	108
BssMI	GATC	2 cut(s)	62, 313
Bst4CI	ACNGT	1 cut(s)	75
BstC8I	GCNNGC	2 cut(s)	30, 193
BstKTI	GATC	2 cut(s)	65, 316
BstMBI	GATC	2 cut(s)	62, 313
BstMWI	GCNNNNNNNGC	2 cut(s)	34, 230
BstNSI	RCATGY	1 cut(s)	279
BstSCI	CCNGG	1 cut(s)	108
BstSFI	CTRYAG	1 cut(s)	166
BstV1I	GCAGC	2 cut(s)	277, 280
BstX2I	RGATCY	1 cut(s)	62
BstYI	RGATCY	1 cut(s)	62
BtsI	GCAGTG	1 cut(s)	303
BtsIMutI	CAGTG	1 cut(s)	303
Cac8I	GCNNGC	2 cut(s)	30, 193
CviAII	CATG	2 cut(s)	221, 276
CviJI	RGCY	7 cut(s)	22, 32, 47, 95, 121, 143, 191
CviKI_1	RGCY	7 cut(s)	22, 32, 47, 95, 121, 143, 191
DpnI	GATC	2 cut(s)	64, 315
DpnII	GATC	2 cut(s)	62, 313
EciI	GGCGGA	1 cut(s)	128
FaeI	CATG	2 cut(s)	224, 279
FaiI	YATR	6 cut(s)	19, 92, 222, 231, 277, 326
FatI	CATG	2 cut(s)	220, 275
Fnu4HI	GCNGC	2 cut(s)	291, 294
Fsp4HI	GCNGC	2 cut(s)	291, 294
FspBI	CTAG	1 cut(s)	29
GluI	GCNGC	2 cut(s)	291, 294
GsuI	CTGGAG	1 cut(s)	233
HapII	CCGG	1 cut(s)	110
Hin1II	CATG	2 cut(s)	224, 279
HindIII	AAGCTT	1 cut(s)	189
HpaII	CCGG	1 cut(s)	110
Hpy166II	GTNNAC	1 cut(s)	71
Hpy188I	TCNGA	1 cut(s)	333
Hpy188III	TCNNGA	2 cut(s)	9, 212
Hpy8I	GTNNAC	1 cut(s)	71
HpyAV	CCTTC	2 cut(s)	145, 260
HpyCH4III	ACNGT	1 cut(s)	75
HpyCH4V	TGCA	5 cut(s)	90, 161, 168, 272, 296
HpyF10VI	GCNNNNNNNGC	2 cut(s)	34, 230
Hsp92II	CATG	2 cut(s)	224, 279
Kzo9I	GATC	2 cut(s)	62, 313
LmnI	GCTCC	1 cut(s)	214
LpnPI	CCDG	4 cut(s)	51, 123, 197, 248
Lsp1109I	GCAGC	2 cut(s)	277, 280
MaeI	CTAG	1 cut(s)	29
MaeIII	GTNAC	2 cut(s)	278, 301
MalI	GATC	2 cut(s)	64, 315
MboI	GATC	2 cut(s)	62, 313
MboII	GAAGA	2 cut(s)	72, 346
MflI	RGATCY	1 cut(s)	62
MhlI	GDGCHC	1 cut(s)	219
MluCI	AATT	2 cut(s)	241, 327
MnlI	CCTC	3 cut(s)	73, 149, 235
MspI	CCGG	1 cut(s)	110
MspR9I	CCNGG	1 cut(s)	110
MwoI	GCNNNNNNNGC	2 cut(s)	34, 230
NciI	CCSGG	1 cut(s)	110
NdeII	GATC	2 cut(s)	62, 313
NheI	GCTAGC	1 cut(s)	28
NlaIII	CATG	2 cut(s)	224, 279
NmuCI	GTSAC	1 cut(s)	301
NspI	RCATGY	1 cut(s)	279
PciI	ACATGT	1 cut(s)	275
PkrI	GCNGC	2 cut(s)	292, 295
PscI	ACATGT	1 cut(s)	275
PstI	CTGCAG	1 cut(s)	170
PsuI	RGATCY	1 cut(s)	62
SatI	GCNGC	2 cut(s)	291, 294
Sau3AI	GATC	2 cut(s)	62, 313
ScrFI	CCNGG	1 cut(s)	110
SduI	GDGCHC	1 cut(s)	219
SetI	ASST	6 cut(s)	34, 97, 123, 160, 193, 271
SfcI	CTRYAG	1 cut(s)	166
Sse9I	AATT	2 cut(s)	241, 327
SsiI	CCGC	1 cut(s)	113
SspMI	CTAG	1 cut(s)	29
StyD4I	CCNGG	1 cut(s)	108
TaaI	ACNGT	1 cut(s)	75
TasI	AATT	2 cut(s)	241, 327
TscAI	CASTG	1 cut(s)	310
TseFI	GTSAC	1 cut(s)	301
TseI	GCWGC	2 cut(s)	290, 293
Tsp45I	GTSAC	1 cut(s)	301
TspRI	CASTG	1 cut(s)	310
XceI	RCATGY	1 cut(s)	279
XspI	CTAG	1 cut(s)	29

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.