Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

SuperScaffold_111

Orthogroup ID

OG0005148

Physical Location & Seq

Genomic Coordinates Forward (+)

1569623 .. 1572623

Gene Structure 3001 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom111g02610.6

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1944 bp

ATGGCAACTTGTATACCCGCCGGAAGTGGCAGACTCCACTGTAGAGCGAGAGACATCAAGGGACAAGGTTGTAGAAGGACTTCTTGGATTGCCAGTGTTGCATTTAGTGGATGCAAACATAAGGACTTTTCATGGTCACACGGGGTGTCAAAGTTCTTGCAGATCCAAAGATGTAACTTTTCCCCATCTCCAATTAACGAGAACTCAAAGACCTTAAGAACGGTCACTTCATCGAGCTTGAGAGATGACTCCACCAAGTTTTTTGATTTTGCTGTCATTGGTAGTGGAGTTGCTGGGCTCCGCTATGCCCTTGAAGTGGCAAAACATGGATCTGTAGCCGTGATTACCAAGGCTGAACCTCATGAGAGCAACACAAACTACGCTCAAGGTGGTGTTAGTGCTGTTCTTTCCCTATCAGATTCTGTGGAGAGTCATGTCCAGGACACCATTGTAGCAGGGGCTTATCTCTGTGACGAGGAGACTGTCAGAGTTGTGTGTACAGAAGGACCTGAAAGAATTAGAGAATTAATTGCAATGGGGGCATCCTTTGATCACGGGGAGGATGGAAACTTGCACCTAGCAAGAGAGGGAGGTCACTCTCATCACAGGATTGTTCATGCTGCTGATATGACTGGAAGGGAGATTGAAAGGGCACTGTTGGAGGCCGTTCTTAAGGATCCTAAGATCTTCATGTTTGAACACCATCTTGCGATAGATTTGCTAACTTGTCAGGAGGGTTCTGATACAGTTTGTCTTGGCGTTGACACTTTAAATTCAGAAACACGAGAGGTGATACGGTTTATCTCAAAGGTGACTTTACTTGCGTCAGGTGGGGCTGGACAAATCTATCCGACAACTACAAATCCTCCGGTAGCCACAGGGGATGGAATTGCTATGGCCCATCGAGCTCAAGCTGTGATTTCCAACATGGAATTTGTTCAGTTCCATCCAACGGCCTTAGCTGACGAGGGCCTTCCCATCCAACCTACCAAGGCTCGAGAAAATGCATTTCTCATTACTGAAGCTGTCAGGGGTGATGGAGGCATACTGTACAATTTAGACATGGAAAGGTTCATGCCACTCTATGATGAACGAGCAGAACTTGCTCCGAGGGATGTGGTGGCAAGATGCATAGATGACCAGCTTAAAAAGCGAAATGAGAAGTACGTGCTACTTGACATAAGTCACAAGCCCAGAGAAAAAATTCTCTCACACTTCCCCAACATAGCAGCCGAGTGCCTTAAGTATGGCTTGGACATAACTCGCCAGCCAATTCCTGTTGTTCCTGCTGCTCACTATATGTGTGGGGGAGTCCGTACTGGACTCCAGGGAGAGACAAATGTGCAGGGCCTGTACGTGGCAGGTGAAGTTGCTTGCACAGGATTGCATGGAGCCAACCGTCTTGCTAGTAACTCATTGCTTGAAGCACTAGTTTTCGCACGAAGAGCAGTCCAGCCCTCAATTGAACACATGAGGTGCTCTAGCCTCGACTTCAGCACTTCAAATTGGTGGGCCAGACCAGTCGTGCCCGTCTCACTCGAGAGCAATGCCATCGAAAAAATTTTGGCAATGACAAGGGAAGTAAGAAAAGAAGTGCAATCGATCATGTGGAAGTATGTTGGAATTGTACGTTCTACAACAAGGCTTGAAACAGCAAAGCAAAAGATTTGTGCTCTGGAGGATAAATGGGAGGACTACTTATTTCAGATGGGATGGGAACCCACAATGGTGGGGCTCGAGGCTTGCGAAATGAGAAACTTCTTCTGTTGTGCAAAACTGGTGGTGAGCAGCGCCCTTGCTAGGCATGGGAGCCGCGGACTTCACTATACCATCGATTTTCCTGATCTTGAGGAGAGCAAGAGGCTTCCAACAGTTATACTCCCTTCTTCATCCATGCGAAGTTCATGGAGTTCGCGTCAACTACACCAGCTGCCATTGTGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006725 GO:0006732 GO:0006733 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009108 GO:0009117 GO:0009165 GO:0009435 GO:0009507 GO:0009536 GO:0009987 GO:0018130 GO:0019359 GO:0019362 GO:0019363 GO:0019438 GO:0019637 GO:0019674 GO:0034641 GO:0034654 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046496 GO:0051186 GO:0051188 GO:0055086 GO:0071704 GO:0072524 GO:0072525 GO:0090407 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00250 ko00760 ko01100 map00250 map00760 map01100

Pfam Domains

Protein Families

FAD_binding_2 Succ_DH_flav_C

Protein Analysis

648

Amino Acids

71.38

Weight (kDa)

6.57

Isoelectric Point (pI)

39.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005148)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G14760
fragaria_vesca	FvH4_6g50750 FvH4_6g50750 FvH4_6g50750 FvH4_6g50750 FvH4_6g50750
malus_domestica	MD09G1032700.v1.1 MD17G1034300.v1.1
prunus_persica	Prupe.3G285300_v2.0.a1 Prupe.3G285300_v2.0.a1 Prupe.3G285300_v2.0.a1 Prupe.3G285300_v2.0.a1 Prupe.3G285300_v2.0.a1 Prupe.3G285300_v2.0.a1 Prupe.3G285300_v2.0.a1 Prupe.3G285300_v2.0.a1 Prupe.3G285300_v2.0.a1
pyrus_communis	pycom111g02610 pycom17g03170
rosa_chinensis	RchiOBHm_Chr2g0171691
rosa_laevigata	RLG00000022029
rosa_multiflora	Rmu_ssc0000252.1_g000010
rosa_roxburghii	Rroxscaffold_2G00080520
rosa_rugosa	Rorug02G0555400
rosa_samantha	Rh2AG630400 Rh2BG640900 Rh2BG643400 Rh2CG609100 Rh2DG651800
rosa_wichuraiana	Rw2G052170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1352
Acc36I	ACCTGC	1 cut(s)	1352
AccI	GTMKAC	1 cut(s)	13
AccII	CGCG	2 cut(s)	1815, 1915
AciI	CCGC	4 cut(s)	18, 301, 1813, 1815
AclWI	GGATC	4 cut(s)	157, 337, 671, 684
AcsI	RAATTY	4 cut(s)	772, 932, 1203, 1560
AcuI	CTGAAG	2 cut(s)	1041, 1477
AdeI	CACNNNGTG	1 cut(s)	145
AfaI	GTAC	6 cut(s)	499, 1052, 1166, 1318, 1355, 1629
AfiI	CCNNNNNNNGG	4 cut(s)	316, 952, 1357, 1800
AflII	CTTAAG	3 cut(s)	214, 671, 1241
AgsI	TTSAA	7 cut(s)	314, 647, 698, 1424, 1466, 1503, 1649
AhlI	ACTAGT	1 cut(s)	1429
AjnI	CCWGG	2 cut(s)	438, 1326
AjuI	GAANNNNNNNTTGG	2 cut(s)	67, 99
AleI	CACNNNNGTG	1 cut(s)	1727
AluBI	AGCT	7 cut(s)	237, 908, 914, 962, 1025, 1144, 1930
AluI	AGCT	7 cut(s)	237, 908, 914, 962, 1025, 1144, 1930
Alw21I	GWGCWC	3 cut(s)	910, 1481, 1675
Alw26I	GTCTC	4 cut(s)	45, 473, 1328, 1537
AlwI	GGATC	4 cut(s)	157, 337, 671, 684
AlwNI	CAGNNNCTG	2 cut(s)	422, 1351
Ama87I	CYCGRG	3 cut(s)	996, 1538, 1736
AoxI	GGCC	6 cut(s)	663, 897, 954, 970, 1348, 1512
ApeKI	GCWGC	5 cut(s)	620, 1229, 1289, 1788, 1930
ApoI	RAATTY	4 cut(s)	772, 932, 1203, 1560
AseI	ATTAAT	1 cut(s)	527
Asp700I	GAANNNNTTC	3 cut(s)	79, 936, 1203
AspLEI	GCGC	1 cut(s)	1793
AspS9I	GGNCC	5 cut(s)	506, 898, 970, 1348, 1512
AsuHPI	GGTGA	5 cut(s)	802, 823, 1046, 1376, 1795
AvaI	CYCGRG	3 cut(s)	996, 1538, 1736
AvaII	GGWCC	1 cut(s)	506
BaeGI	GKGCMC	2 cut(s)	655, 1530
BamHI	GGATCC	1 cut(s)	676
BanII	GRGCYC	3 cut(s)	300, 910, 1737
BarI	GAAGNNNNNNTAC	2 cut(s)	64, 96
BauI	CACGAG	1 cut(s)	783
Bbv12I	GWGCWC	3 cut(s)	910, 1481, 1675
BbvI	GCAGC	5 cut(s)	607, 1241, 1276, 1800, 1917
BceAI	ACGGC	3 cut(s)	323, 650, 969
BcgI	CGANNNNNNTGC	6 cut(s)	700, 734, 1529, 1534, 1563, 1568
BciT130I	CCWGG	2 cut(s)	440, 1328
BclI	TGATCA	1 cut(s)	550
BcoDI	GTCTC	4 cut(s)	45, 473, 1328, 1537
BcuI	ACTAGT	1 cut(s)	1429
BfaI	CTAG	5 cut(s)	578, 1407, 1430, 1482, 1800
BfmI	CTRYAG	2 cut(s)	40, 333
BfoI	RGCGCY	1 cut(s)	1794
BfrI	CTTAAG	3 cut(s)	214, 671, 1241
BfuAI	ACCTGC	1 cut(s)	1352
BglII	AGATCT	1 cut(s)	684
BisI	GCNGC	6 cut(s)	621, 1230, 1290, 1789, 1813, 1931
BlsI	GCNGC	6 cut(s)	622, 1231, 1291, 1790, 1814, 1932
Bme1390I	CCNGG	2 cut(s)	440, 1328
Bme18I	GGWCC	1 cut(s)	506
BmeT110I	CYCGRG	3 cut(s)	996, 1538, 1736
BmgT120I	GGNCC	5 cut(s)	506, 898, 970, 1348, 1512
BmiI	GGNNCC	5 cut(s)	299, 678, 1393, 1719, 1811
BmrFI	CCNGG	2 cut(s)	440, 1328
BmsI	GCATC	3 cut(s)	101, 551, 1118
BoxI	GACNNNNGTC	1 cut(s)	1182
BpmI	CTGGAG	2 cut(s)	1310, 1697
Bpu10I	CCTNAGC	1 cut(s)	958
BpuEI	CTTGAG	4 cut(s)	259, 369, 894, 1868
Bsa29I	ATCGAT	2 cut(s)	1601, 1833
BsaAI	YACGTR	2 cut(s)	1168, 1357
BsaJI	CCNNGG	5 cut(s)	348, 990, 1109, 1327, 1813
BsaWI	WCCGGW	1 cut(s)	868
BsaXI	ACNNNNNCTCC	4 cut(s)	850, 880, 1900, 1930
Bsc4I	CCNNNNNNNGG	4 cut(s)	316, 952, 1357, 1800
Bse1I	ACTGG	5 cut(s)	93, 637, 1324, 1520, 1782
Bse3DI	GCAATG	4 cut(s)	540, 1415, 1552, 1575
BseBI	CCWGG	2 cut(s)	440, 1328
BseCI	ATCGAT	2 cut(s)	1601, 1833
BseDI	CCNNGG	5 cut(s)	348, 990, 1109, 1327, 1813
BseGI	GGATG	9 cut(s)	116, 542, 568, 889, 946, 978, 1120, 1718, 1889
BseLI	CCNNNNNNNGG	4 cut(s)	316, 952, 1357, 1800
BseMI	GCAATG	4 cut(s)	540, 1415, 1552, 1575
BseNI	ACTGG	5 cut(s)	93, 637, 1324, 1520, 1782
BseRI	GAGGAG	2 cut(s)	491, 1865
BseSI	GKGCMC	2 cut(s)	655, 1530
BseXI	GCAGC	5 cut(s)	607, 1241, 1276, 1800, 1917
BseYI	CCCAGC	1 cut(s)	293
BsgI	GTGCAG	1 cut(s)	1364
Bsh1236I	CGCG	2 cut(s)	1815, 1915
BshFI	GGCC	6 cut(s)	665, 899, 956, 972, 1350, 1514
BshVI	ATCGAT	2 cut(s)	1601, 1833
BsiHKAI	GWGCWC	3 cut(s)	910, 1481, 1675
BsiHKCI	CYCGRG	3 cut(s)	996, 1538, 1736
BsiSI	CCGG	2 cut(s)	21, 869
BslFI	GGGAC	1 cut(s)	75
BslI	CCNNNNNNNGG	4 cut(s)	316, 952, 1357, 1800
BsmAI	GTCTC	4 cut(s)	45, 473, 1328, 1537
BsmBI	CGTCTC	1 cut(s)	1537
BsmFI	GGGAC	1 cut(s)	75
BsnI	GGCC	6 cut(s)	665, 899, 956, 972, 1350, 1514
BsoBI	CYCGRG	3 cut(s)	996, 1538, 1736
Bsp1286I	GDGCHC	7 cut(s)	300, 655, 910, 1481, 1530, 1675, 1737
Bsp1407I	TGTACA	2 cut(s)	497, 1050
Bsp143I	GATC	7 cut(s)	162, 329, 550, 676, 684, 1602, 1843
BspACI	CCGC	4 cut(s)	18, 301, 1813, 1815
BspANI	GGCC	6 cut(s)	665, 899, 956, 972, 1350, 1514
BspDI	ATCGAT	2 cut(s)	1601, 1833
BspFNI	CGCG	2 cut(s)	1815, 1915
BspHI	TCATGA	1 cut(s)	361
BspLI	GGNNCC	5 cut(s)	299, 678, 1393, 1719, 1811
BspMI	ACCTGC	1 cut(s)	1352
BspPI	GGATC	4 cut(s)	157, 337, 671, 684
BspQI	GCTCTTC	1 cut(s)	1438
BspTI	CTTAAG	3 cut(s)	214, 671, 1241
BsrDI	GCAATG	4 cut(s)	540, 1415, 1552, 1575
BsrGI	TGTACA	2 cut(s)	497, 1050
BsrI	ACTGG	5 cut(s)	93, 637, 1324, 1520, 1782
BssECI	CCNNGG	5 cut(s)	348, 990, 1109, 1327, 1813
BssMI	GATC	7 cut(s)	162, 329, 550, 676, 684, 1602, 1843
BssNAI	GTATAC	1 cut(s)	14
BssSI	CACGAG	1 cut(s)	783
BssT1I	CCWWGG	2 cut(s)	348, 990
Bst1107I	GTATAC	1 cut(s)	14
Bst2BI	CACGAG	1 cut(s)	783
Bst2UI	CCWGG	2 cut(s)	440, 1328
Bst4CI	ACNGT	9 cut(s)	41, 223, 484, 657, 748, 798, 1050, 1400, 1873
Bst6I	CTCTTC	1 cut(s)	1438
BstAFI	CTTAAG	3 cut(s)	214, 671, 1241
BstAPI	GCANNNNNTGC	1 cut(s)	1103
BstAUI	TGTACA	2 cut(s)	497, 1050
BstBAI	YACGTR	2 cut(s)	1168, 1357
BstC8I	GCNNGC	3 cut(s)	1268, 1375, 1744
BstDEI	CTNAG	2 cut(s)	681, 958
BstDSI	CCRYGG	1 cut(s)	1813
BstF5I	GGATG	9 cut(s)	116, 542, 568, 889, 946, 978, 1120, 1718, 1889
BstFNI	CGCG	2 cut(s)	1815, 1915
BstH2I	RGCGCY	1 cut(s)	1794
BstHHI	GCGC	1 cut(s)	1793
BstKTI	GATC	7 cut(s)	165, 332, 553, 679, 687, 1605, 1846
BstMAI	GTCTC	4 cut(s)	45, 473, 1328, 1537
BstMBI	GATC	7 cut(s)	162, 329, 550, 676, 684, 1602, 1843
BstMWI	GCNNNNNNNGC	6 cut(s)	98, 539, 905, 1103, 1150, 1445
BstNI	CCWGG	2 cut(s)	440, 1328
BstPAI	GACNNNNGTC	1 cut(s)	1182
BstSCI	CCNGG	2 cut(s)	438, 1326
BstSFI	CTRYAG	2 cut(s)	40, 333
BstSLI	GKGCMC	2 cut(s)	655, 1530
BstUI	CGCG	2 cut(s)	1815, 1915
BstV1I	GCAGC	5 cut(s)	607, 1241, 1276, 1800, 1917
BstX2I	RGATCY	4 cut(s)	162, 329, 676, 684
BstXI	CCANNNNNNTGG	1 cut(s)	1729
BstYI	RGATCY	4 cut(s)	162, 329, 676, 684
BstZ17I	GTATAC	1 cut(s)	14
Bsu15I	ATCGAT	2 cut(s)	1601, 1833
BsuRI	GGCC	6 cut(s)	665, 899, 956, 972, 1350, 1514
BsuTUI	ATCGAT	2 cut(s)	1601, 1833
BtgI	CCRYGG	1 cut(s)	1813
BtsCI	GGATG	9 cut(s)	116, 542, 568, 889, 946, 978, 1120, 1718, 1889
BtsIMutI	CAGTG	3 cut(s)	37, 100, 653
BveI	ACCTGC	1 cut(s)	1352
Cac8I	GCNNGC	3 cut(s)	1268, 1375, 1744
CaiI	CAGNNNCTG	2 cut(s)	422, 1351
CciI	TCATGA	1 cut(s)	361
CfoI	GCGC	1 cut(s)	1793
Cfr13I	GGNCC	5 cut(s)	506, 898, 970, 1348, 1512
Cfr42I	CCGCGG	1 cut(s)	1816
ClaI	ATCGAT	2 cut(s)	1601, 1833
CseI	GACGC	2 cut(s)	813, 1904
Csp6I	GTAC	6 cut(s)	498, 1051, 1165, 1317, 1354, 1628
CspCI	CAANNNNNGTGG	2 cut(s)	1761, 1796
CviQI	GTAC	6 cut(s)	498, 1051, 1165, 1317, 1354, 1628
DdeI	CTNAG	2 cut(s)	681, 958
DpnI	GATC	7 cut(s)	164, 331, 552, 678, 686, 1604, 1845
DpnII	GATC	7 cut(s)	162, 329, 550, 676, 684, 1602, 1843
DraI	TTTAAA	1 cut(s)	771
DraIII	CACNNNGTG	1 cut(s)	145
Eam1104I	CTCTTC	1 cut(s)	1438
EarI	CTCTTC	1 cut(s)	1438
Ecl136II	GAGCTC	1 cut(s)	908
Eco130I	CCWWGG	2 cut(s)	348, 990
Eco24I	GRGCYC	3 cut(s)	300, 910, 1737
Eco47I	GGWCC	1 cut(s)	506
Eco53kI	GAGCTC	1 cut(s)	908
Eco57I	CTGAAG	2 cut(s)	1041, 1477
Eco88I	CYCGRG	3 cut(s)	996, 1538, 1736
EcoICRI	GAGCTC	1 cut(s)	908
EcoO109I	RGGNCCY	3 cut(s)	506, 970, 1348
EcoRII	CCWGG	2 cut(s)	438, 1326
EcoT14I	CCWWGG	2 cut(s)	348, 990
EcoT22I	ATGCAT	2 cut(s)	1009, 1133
EcoT38I	GRGCYC	3 cut(s)	300, 910, 1737
ErhI	CCWWGG	2 cut(s)	348, 990
Esp3I	CGTCTC	1 cut(s)	1537
FalI	AAGNNNNNCTT	4 cut(s)	67, 99, 1235, 1267
FaqI	GGGAC	1 cut(s)	75
FauI	CCCGC	1 cut(s)	25
FbaI	TGATCA	1 cut(s)	550
FblI	GTMKAC	1 cut(s)	13
Fnu4HI	GCNGC	6 cut(s)	621, 1230, 1290, 1789, 1813, 1931
FokI	GGATG	9 cut(s)	123, 529, 575, 896, 933, 965, 1127, 1725, 1876
FriOI	GRGCYC	3 cut(s)	300, 910, 1737
Fsp4HI	GCNGC	6 cut(s)	621, 1230, 1290, 1789, 1813, 1931
FspBI	CTAG	5 cut(s)	578, 1407, 1430, 1482, 1800
GlaI	GCGC	1 cut(s)	1792
GluI	GCNGC	6 cut(s)	621, 1230, 1290, 1789, 1813, 1931
GsaI	CCCAGC	1 cut(s)	297
GsuI	CTGGAG	2 cut(s)	1310, 1697
HaeII	RGCGCY	1 cut(s)	1794
HaeIII	GGCC	6 cut(s)	665, 899, 956, 972, 1350, 1514
HapII	CCGG	2 cut(s)	21, 869
HgaI	GACGC	2 cut(s)	813, 1904
HhaI	GCGC	1 cut(s)	1793
Hin6I	GCGC	1 cut(s)	1791
HinP1I	GCGC	1 cut(s)	1791
HincII	GTYRAC	2 cut(s)	763, 1919
HindII	GTYRAC	2 cut(s)	763, 1919
HinfI	GANTC	6 cut(s)	33, 248, 419, 430, 1311, 1323
HpaII	CCGG	2 cut(s)	21, 869
HphI	GGTGA	5 cut(s)	802, 823, 1046, 1376, 1795
Hpy166II	GTNNAC	4 cut(s)	14, 498, 763, 1919
Hpy188I	TCNGA	7 cut(s)	418, 488, 742, 778, 852, 1110, 1707
Hpy188III	TCNNGA	7 cut(s)	362, 731, 998, 1540, 1676, 1841, 1847
Hpy8I	GTNNAC	4 cut(s)	14, 498, 763, 1919
HpyAV	CCTTC	5 cut(s)	69, 497, 630, 983, 1893
HpyCH4III	ACNGT	9 cut(s)	41, 223, 484, 657, 748, 798, 1050, 1400, 1873
HpyCH4IV	ACGT	3 cut(s)	1167, 1356, 1630
HpyF10VI	GCNNNNNNNGC	6 cut(s)	98, 539, 905, 1103, 1150, 1445
HpyF3I	CTNAG	2 cut(s)	681, 958
HpySE526I	ACGT	3 cut(s)	1167, 1356, 1630
HspAI	GCGC	1 cut(s)	1791
Ksp22I	TGATCA	1 cut(s)	550
KspI	CCGCGG	1 cut(s)	1816
Kzo9I	GATC	7 cut(s)	162, 329, 550, 676, 684, 1602, 1843
LguI	GCTCTTC	1 cut(s)	1438
LmnI	GCTCC	4 cut(s)	303, 1111, 1391, 1809
Lsp1109I	GCAGC	5 cut(s)	607, 1241, 1276, 1800, 1917
LweI	GCATC	3 cut(s)	101, 551, 1118
MaeI	CTAG	5 cut(s)	578, 1407, 1430, 1482, 1800
MaeII	ACGT	3 cut(s)	1167, 1356, 1630
MaeIII	GTNAC	8 cut(s)	135, 173, 223, 470, 593, 811, 1184, 1409
MalI	GATC	7 cut(s)	164, 331, 552, 678, 686, 1604, 1845
MboI	GATC	7 cut(s)	162, 329, 550, 676, 684, 1602, 1843
MboII	GAAGA	4 cut(s)	679, 1455, 1753, 1878
MfeI	CAATTG	1 cut(s)	1461
MflI	RGATCY	4 cut(s)	162, 329, 676, 684
MhlI	GDGCHC	7 cut(s)	300, 655, 910, 1481, 1530, 1675, 1737
MlyI	GAGTC	5 cut(s)	27, 242, 439, 1317, 1320
MmeI	TCCRAC	7 cut(s)	639, 875, 948, 974, 1006, 1600, 1892
Mph1103I	ATGCAT	2 cut(s)	1009, 1133
MroXI	GAANNNNTTC	3 cut(s)	79, 936, 1203
MseI	TTAA	7 cut(s)	195, 215, 527, 672, 770, 1146, 1242
MslI	CAYNNNNRTG	1 cut(s)	1727
MspA1I	CMGCKG	2 cut(s)	1815, 1930
MspCI	CTTAAG	3 cut(s)	214, 671, 1241
MspI	CCGG	2 cut(s)	21, 869
MspR9I	CCNGG	2 cut(s)	440, 1328
MunI	CAATTG	1 cut(s)	1461
MvaI	CCWGG	2 cut(s)	440, 1328
MvnI	CGCG	2 cut(s)	1815, 1915
MwoI	GCNNNNNNNGC	6 cut(s)	98, 539, 905, 1103, 1150, 1445
NdeII	GATC	7 cut(s)	162, 329, 550, 676, 684, 1602, 1843
NlaIV	GGNNCC	5 cut(s)	299, 678, 1393, 1719, 1811
NmeAIII	GCCGAG	1 cut(s)	1258
NmuCI	GTSAC	6 cut(s)	135, 223, 470, 593, 811, 1184
NsiI	ATGCAT	2 cut(s)	1009, 1133
OliI	CACNNNNGTG	1 cut(s)	1727
PaeR7I	CTCGAG	3 cut(s)	996, 1538, 1736
PagI	TCATGA	1 cut(s)	361
PaqCI	CACCTGC	1 cut(s)	1352
PciSI	GCTCTTC	1 cut(s)	1438
PcsI	WCGNNNNNNNCGW	1 cut(s)	1743
PdmI	GAANNNNTTC	3 cut(s)	79, 936, 1203
PfeI	GAWTC	1 cut(s)	419
PfoI	TCCNGGA	1 cut(s)	438
PkrI	GCNGC	6 cut(s)	622, 1231, 1291, 1790, 1814, 1932
PleI	GAGTC	5 cut(s)	27, 242, 438, 1317, 1319
PpsI	GAGTC	5 cut(s)	27, 242, 438, 1317, 1319
Ppu21I	YACGTR	2 cut(s)	1168, 1357
PpuMI	RGGWCCY	1 cut(s)	506
PshAI	GACNNNNGTC	1 cut(s)	1182
PshBI	ATTAAT	1 cut(s)	527
Psp124BI	GAGCTC	1 cut(s)	910
Psp5II	RGGWCCY	1 cut(s)	506
Psp6I	CCWGG	2 cut(s)	438, 1326
PspFI	CCCAGC	1 cut(s)	293
PspGI	CCWGG	2 cut(s)	438, 1326
PspN4I	GGNNCC	5 cut(s)	299, 678, 1393, 1719, 1811
PspPI	GGNCC	5 cut(s)	506, 898, 970, 1348, 1512
PspPPI	RGGWCCY	1 cut(s)	506
PspXI	VCTCGAGB	1 cut(s)	1736
PstNI	CAGNNNCTG	2 cut(s)	422, 1351
PsuI	RGATCY	4 cut(s)	162, 329, 676, 684
PvuII	CAGCTG	1 cut(s)	1930
RsaI	GTAC	6 cut(s)	499, 1052, 1166, 1318, 1355, 1629
RsaNI	GTAC	6 cut(s)	498, 1051, 1165, 1317, 1354, 1628
RseI	CAYNNNNRTG	1 cut(s)	1727
SacI	GAGCTC	1 cut(s)	910
SacII	CCGCGG	1 cut(s)	1816
SapI	GCTCTTC	1 cut(s)	1438
SaqAI	TTAA	7 cut(s)	195, 215, 527, 672, 770, 1146, 1242
SatI	GCNGC	6 cut(s)	621, 1230, 1290, 1789, 1813, 1931
Sau3AI	GATC	7 cut(s)	162, 329, 550, 676, 684, 1602, 1843
Sau96I	GGNCC	5 cut(s)	506, 898, 970, 1348, 1512
SchI	GAGTC	5 cut(s)	27, 242, 439, 1317, 1320
ScrFI	CCNGG	2 cut(s)	440, 1328
SduI	GDGCHC	7 cut(s)	300, 655, 910, 1481, 1530, 1675, 1737
SfaNI	GCATC	3 cut(s)	101, 551, 1118
SfcI	CTRYAG	2 cut(s)	40, 333
Sfr274I	CTCGAG	3 cut(s)	996, 1538, 1736
Sfr303I	CCGCGG	1 cut(s)	1816
SgrBI	CCGCGG	1 cut(s)	1816
SinI	GGWCC	1 cut(s)	506
SlaI	CTCGAG	3 cut(s)	996, 1538, 1736
SmiMI	CAYNNNNRTG	1 cut(s)	1727
SpeI	ACTAGT	1 cut(s)	1429
SsiI	CCGC	4 cut(s)	18, 301, 1813, 1815
SspMI	CTAG	5 cut(s)	578, 1407, 1430, 1482, 1800
SstI	GAGCTC	1 cut(s)	910
StyD4I	CCNGG	2 cut(s)	438, 1326
StyI	CCWWGG	2 cut(s)	348, 990
TaaI	ACNGT	9 cut(s)	41, 223, 484, 657, 748, 798, 1050, 1400, 1873
TaiI	ACGT	3 cut(s)	1170, 1359, 1633
TaqI	TCGA	9 cut(s)	233, 904, 997, 1488, 1539, 1554, 1601, 1737, 1833
TatI	WGTACW	2 cut(s)	497, 1050
TauI	GCSGC	1 cut(s)	1815
TfiI	GAWTC	1 cut(s)	419
Tru1I	TTAA	7 cut(s)	195, 215, 527, 672, 770, 1146, 1242
Tru9I	TTAA	7 cut(s)	195, 215, 527, 672, 770, 1146, 1242
TscAI	CASTG	3 cut(s)	44, 100, 660
TseFI	GTSAC	6 cut(s)	135, 223, 470, 593, 811, 1184
TseI	GCWGC	5 cut(s)	620, 1229, 1289, 1788, 1930
Tsp45I	GTSAC	6 cut(s)	135, 223, 470, 593, 811, 1184
TspDTI	ATGAA	8 cut(s)	120, 219, 605, 679, 1063, 1104, 1878, 1893
TspGWI	ACGGA	1 cut(s)	1304
TspRI	CASTG	3 cut(s)	44, 100, 660
Vha464I	CTTAAG	3 cut(s)	214, 671, 1241
VpaK11BI	GGWCC	1 cut(s)	506
VspI	ATTAAT	1 cut(s)	527
XapI	RAATTY	4 cut(s)	772, 932, 1203, 1560
XhoI	CTCGAG	3 cut(s)	996, 1538, 1736
XmiI	GTMKAC	1 cut(s)	13
XmnI	GAANNNNTTC	3 cut(s)	79, 936, 1203
XspI	CTAG	5 cut(s)	578, 1407, 1430, 1482, 1800
Zsp2I	ATGCAT	2 cut(s)	1009, 1133

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.