Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0005148

Physical Location & Seq

Genomic Coordinates Reverse (-)

78466735 .. 78472944

Gene Structure 6210 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG609100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2970 bp

ATGACAACTTGTATACCAGCTGGAACTGGTAAACTGCATTTCAGAGTAAGGGACTTCAACGCACAAGGCTGTAGAAAGGCTTCTTGGGTCACATTTAGTGAGCTTTCATGGTCGCGTGGGGTTTCAAAGTTCTTGCAAATTCAGAGATGTAACTCCTCCCAATCTCCAATTAATGAGAGCTCAAAGCCCTTAAGAACCATCACTTCATCAAGCTTGCGAGACGGTTCCACTAAATTCTTCGATTTTACTGTTATTGGTAGTGGAGTTGCTGGCCTACGCTATGCCCTGGAAGTGGCAAAACATGGATCTGTTGCTGTCATTACCAAGGCTGAGCCTCATGAAAGTAATACAAATTATGCTCAAGGTGGTGTTAGTGCTGTACTGTGCCCTTCGGATTCTGTGGAGAGTCATGTCCAGGACACCATTGTAGCAGGAGCTTATCTATGTGATGAGGAGACTGTCAGAGTTGTTTGTACAGAGGGACCTGAAAGAATTAGAGAATTAATTGCAATGGGAGCATCATTTGATCACGGGGAGGATGGAAACTTGCACCTAACAAGAGAGGGGGGTCACTCTCATCACAGAATTGTTCATGCTGCTGATATGACGGGAAGGGAGATTGAACGGGCACTGTTGGAGGCAGTTATTAAGGATCCTAATATCTTCATGTTTCAACACCATTTTGCTATAGATTTGCTAACTTCTCAGGACGGTTCTGAGACAGTTTGCCTGGGTGTTGACACTTTGAATACAGAGACACTTGAGGTGATACGTTTTATTTCAAAGGTGACTTTACTAGCATCAGGTGGGGCTGGACAAATCTATCCAACCACTACAAATCCTCCGGTAGCCACTGGAGATGGAATTGCAATGGCTCATCGAGCTCAAGCTGTGGTCTCCAACATGGAATTTATTCAGTTCCACCCCACGGCTTTGGCTGATGAAGGCCTCCCTGTCAAATCTACCAAGGCTCGAGGAAATGCATTTCTCATCACTGAAGCTGTCAGGGGTGATGGTGGCATTCTGTACAATTTAGACATGGAAAGGTTCATGCCACTGTATGATGAACGAGCAGAACTTGCTACCAGGGATGTGGTAGCTAGAAGCATAGATGACCAGCTTAAAAAGCGTAATGAGAAGTATGTGCTACTTGATATAAGTCACAAGCCGAGGGACAAAATTCTATCACACTTCCCTAATATTGCCGCTGAGTGCCTTAGAGGTGGCTTGGATATAACTCGCCAGCCAATTCCTGTGGTTCCTGCAGCTCATTATATGTGTGGGGGTGTCCGTGCTGGACTCCAGGGAGAGACGAATGTGCAGGGCCTTTATGTGGCAGGCGAAGTTGCTTGCACAGGTTTGCATGGAGCTAACCGTCTTGCTAGTAACTCATTGCTTGAAGCTCTGGTTTTTGCACGAAGAGCAGTCCAGCCCTCCATTGATCACATGAAGAGCTCTAGCCTTGACTTCAGTGCTTCAAATTGGTGGTCCAGACCAGTTGTGCCTATGTCACTTGAGCGCAATGTCATCAACAAAATTTTGACCATGACCAGGAAAGTAAGAAAAGAATTGCAATCAATCATGTGGAACTATGTTGGAATTGTTCGTTCTACAACAAGGCTCGAGGCAGCAGAACAAAAGATTCATGATCTTGAGGCGAAATGGGAGGACTACTTATTCCGGTTGGGATGGGAACCCACAATGGTGGGGCTTGAGGCTTGTGAAATGAGAAACTTTTTTTGTTGTGCAAAGATGGTGGTGAGCAGTGCCCTTGCTAGACATGAGAGCCGTGGTCTTCACTACACGATTGATTTTCCTCATGTTGAAGAAAGTGAGAGGCTGCCAACAATAATATTCCCTTGTTCGTCTGTAAAGAGTACATGGAGTTCACGACAACTACACAATCAGCCGATGTCTTTGGGAGTGAATGCTGGTGGTTCTGGGAGTTGTAGGTTTCCGGCCATATACAACTTTGGTGACTCAAACTCCGACACCGGCGCTATTTCAGCCGCCATAGAAGTGGTTCCTCCTCCCAATGGTGAAAGTTTCTTTGGACATTCTTCTGGACGCTTTTCTGATGGTCGCCTTATTATAGATTTCATAGCTGAGAAGTTGCAGCTACCATATCTCAGTCCATACTTGGACTCACTTGGGACTAATTTCAGGCATGGTGCAAATTTTGCAACTGGCGGTTCATCCATTAGGCCAGGCGGTTATAGCCCGTTTCATCTCGGCATTCAAGCTTCACAGTTCGTAAGATTCAAGTCTCAATCCATAGCCCTCTACAAGCAACAAAGTTCAAACACTCAAAGACTTCCTAGGCCGGAGGACTTCTCGAAAGCTTTGTACACAATTGATATTGGTCAGAATGATCTTGCCTATGGTTTTCAACACGGGACGATTCAGCAAGTTCAAGCTTCCATTCCTGATATTCTCACTCAGTTAGACCAAGCCATGAATAAACTATACAAAGAAGGGGCAAGGTTTTTTTGGGTGCATAACACAGGGCCTCATGGGTGCTTGCCCTATAATGTCATCTATGACAAATCAAAGCCTGGTAATCTGGACCAGATTGGCTGCGTGAAGCCTACCAACGAGGTAGCTCAGGAGTTCAATCGGCAGCTTAAGAACAGCGTATTAAACTTGAGGAAGCAGCTCCCTCTTGCAGTATTCACTTATGTCGATGTGTATTCAGCTAAATATACAGTGATAAGCAACGCGAAAAATGAAGGTTTTGTGGATCCATTTGACTTCTGCTGTGGCAGTTACAAGGGGTACCATATTGATTGTGGAAAGAAGGCCATAGTGAATGGAACGGTATATGGAAACCCTTGCAATAATCCATCAAGACATATTAGTTGGGATGGCATACACTACTCTCAGGCAGCAAACATATTGCTTGCCAATCAAATTATTAACGGCTCACTATCTGATCCACCAGTTTCAATCACAGAGGCTTGTCATGGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006725 GO:0006732 GO:0006733 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009108 GO:0009117 GO:0009165 GO:0009435 GO:0009507 GO:0009536 GO:0009987 GO:0018130 GO:0019359 GO:0019362 GO:0019363 GO:0019438 GO:0019637 GO:0019674 GO:0034641 GO:0034654 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046496 GO:0051186 GO:0051188 GO:0055086 GO:0071704 GO:0072524 GO:0072525 GO:0090407 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00250 ko00760 ko01100 map00250 map00760 map01100

Pfam Domains

Protein Families

FAD_binding_2 Succ_DH_flav_C

Protein Analysis

989

Amino Acids

108.77

Weight (kDa)

6.82

Isoelectric Point (pI)

39.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DAO	PF01266	81 - 189	1.4e-06	FAD dependent oxidoreductase
FAD_binding_2	PF00890	82 - 465	1.5e-87	FAD binding domain
Succ_DH_flav_C	PF02910	521 - 610	1.2e-16	Fumarate reductase flavoprotein C-term
Lipase_GDSL	PF00657	655 - 971	1.3e-44	GDSL-like Lipase/Acylhydrolase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005148)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G14760
fragaria_vesca	FvH4_6g50750 FvH4_6g50750 FvH4_6g50750 FvH4_6g50750 FvH4_6g50750
malus_domestica	MD09G1032700.v1.1 MD17G1034300.v1.1
prunus_persica	Prupe.3G285300_v2.0.a1 Prupe.3G285300_v2.0.a1 Prupe.3G285300_v2.0.a1 Prupe.3G285300_v2.0.a1 Prupe.3G285300_v2.0.a1 Prupe.3G285300_v2.0.a1 Prupe.3G285300_v2.0.a1 Prupe.3G285300_v2.0.a1 Prupe.3G285300_v2.0.a1
pyrus_communis	pycom111g02610 pycom17g03170
rosa_chinensis	RchiOBHm_Chr2g0171691
rosa_laevigata	RLG00000022029
rosa_multiflora	Rmu_ssc0000252.1_g000010
rosa_roxburghii	Rroxscaffold_2G00080520
rosa_rugosa	Rorug02G0555400
rosa_samantha	Rh2AG630400 Rh2BG640900 Rh2BG643400 Rh2CG609100 Rh2DG651800
rosa_wichuraiana	Rw2G052170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	2775
AccB1I	GGYRCC	1 cut(s)	2775
AccI	GTMKAC	1 cut(s)	13
AccII	CGCG	2 cut(s)	115, 2720
AciI	CCGC	4 cut(s)	1206, 2010, 2190, 2211
AclWI	GGATC	6 cut(s)	313, 647, 660, 2735, 2748, 2927
AcoI	YGGCCR	1 cut(s)	1959
AcsI	RAATTY	6 cut(s)	138, 233, 908, 1179, 1536, 2176
AcuI	CTGAAG	2 cut(s)	1017, 1453
AfaI	GTAC	6 cut(s)	381, 475, 1028, 1879, 2348, 2777
AfiI	CCNNNNNNNGG	5 cut(s)	292, 928, 1333, 1551, 2036
AflII	CTTAAG	2 cut(s)	190, 2624
AjnI	CCWGG	8 cut(s)	285, 414, 729, 1085, 1302, 1550, 2206, 2554
AjuI	GAANNNNNNNTTGG	4 cut(s)	67, 99, 2034, 2066
AleI	CACNNNNGTG	1 cut(s)	1703
Alw21I	GWGCWC	3 cut(s)	182, 886, 1457
Alw26I	GTCTC	7 cut(s)	213, 449, 713, 749, 901, 1304, 2271
AlwI	GGATC	6 cut(s)	313, 647, 660, 2735, 2748, 2927
Ama87I	CYCGRG	2 cut(s)	972, 1622
AoxI	GGCC	8 cut(s)	271, 946, 1324, 1959, 2204, 2321, 2507, 2799
ApeKI	GCWGC	9 cut(s)	596, 1265, 1628, 1840, 2116, 2577, 2620, 2653, 2885
ApoI	RAATTY	6 cut(s)	138, 233, 908, 1179, 1536, 2176
ArsI	GACNNNNNNTTYG	2 cut(s)	1472, 1504
AseI	ATTAAT	2 cut(s)	171, 503
Asp700I	GAANNNNTTC	3 cut(s)	79, 912, 2022
Asp718I	GGTACC	1 cut(s)	2775
AspA2I	CCTAGG	1 cut(s)	2318
AspLEI	GCGC	2 cut(s)	1521, 2000
AspS9I	GGNCC	5 cut(s)	482, 1324, 1488, 2507, 2566
AsuHPI	GGTGA	6 cut(s)	778, 799, 1022, 1771, 1988, 2051
AvaI	CYCGRG	2 cut(s)	972, 1622
AvaII	GGWCC	3 cut(s)	482, 1488, 2566
AvrII	CCTAGG	1 cut(s)	2318
BaeGI	GKGCMC	3 cut(s)	389, 631, 1771
BamHI	GGATCC	2 cut(s)	652, 2740
BanI	GGYRCC	1 cut(s)	2775
BanII	GRGCYC	3 cut(s)	182, 886, 1457
BarI	GAAGNNNNNNTAC	2 cut(s)	64, 96
BbsI	GAAGAC	1 cut(s)	1787
Bbv12I	GWGCWC	3 cut(s)	182, 886, 1457
BbvI	GCAGC	9 cut(s)	583, 1277, 1640, 1827, 2128, 2564, 2632, 2665, 2897
BccI	CCATC	9 cut(s)	206, 533, 854, 1007, 1683, 1747, 2072, 2851, 2858
BceAI	ACGGC	3 cut(s)	945, 1773, 2935
BciT130I	CCWGG	8 cut(s)	287, 416, 731, 1087, 1304, 1552, 2208, 2556
BclI	TGATCA	2 cut(s)	526, 1441
BcoDI	GTCTC	7 cut(s)	213, 449, 713, 749, 901, 1304, 2271
BfaI	CTAG	6 cut(s)	797, 1101, 1383, 1458, 1776, 2319
BfmI	CTRYAG	3 cut(s)	70, 687, 1263
BfoI	RGCGCY	1 cut(s)	2001
BfrI	CTTAAG	2 cut(s)	190, 2624
BlnI	CCTAGG	1 cut(s)	2318
BlpI	GCTNAGC	1 cut(s)	330
Bme1390I	CCNGG	8 cut(s)	287, 416, 731, 1087, 1304, 1552, 2208, 2556
Bme18I	GGWCC	3 cut(s)	482, 1488, 2566
BmeT110I	CYCGRG	2 cut(s)	972, 1622
BmgT120I	GGNCC	5 cut(s)	482, 1324, 1488, 2507, 2566
BmiI	GGNNCC	8 cut(s)	226, 483, 654, 1260, 1695, 2025, 2742, 2777
BmrFI	CCNGG	8 cut(s)	287, 416, 731, 1087, 1304, 1552, 2208, 2556
BmsI	GCATC	2 cut(s)	527, 809
BpiI	GAAGAC	1 cut(s)	1787
BplI	GAGNNNNNCTC	2 cut(s)	2318, 2350
BpmI	CTGGAG	2 cut(s)	876, 1286
Bpu10I	CCTNAGC	1 cut(s)	2604
Bpu1102I	GCTNAGC	1 cut(s)	330
BpuEI	CTTGAG	7 cut(s)	345, 782, 870, 1535, 1673, 1733, 2665
BsaI	GGTCTC	1 cut(s)	901
BsaWI	WCCGGW	2 cut(s)	844, 1680
BsaXI	ACNNNNNCTCC	4 cut(s)	826, 856, 1970, 2000
Bsc4I	CCNNNNNNNGG	5 cut(s)	292, 928, 1333, 1551, 2036
Bse118I	RCCGGY	1 cut(s)	1994
Bse1I	ACTGG	5 cut(s)	31, 859, 1496, 2191, 2939
Bse3DI	GCAATG	4 cut(s)	516, 876, 1391, 1528
BseBI	CCWGG	8 cut(s)	287, 416, 731, 1087, 1304, 1552, 2208, 2556
BseGI	GGATG	5 cut(s)	544, 1096, 1694, 2195, 2869
BseLI	CCNNNNNNNGG	5 cut(s)	292, 928, 1333, 1551, 2036
BseMI	GCAATG	4 cut(s)	516, 876, 1391, 1528
BseMII	CTCAG	9 cut(s)	321, 708, 719, 1200, 2097, 2143, 2453, 2618, 2894
BseNI	ACTGG	5 cut(s)	31, 859, 1496, 2191, 2939
BseRI	GAGGAG	3 cut(s)	145, 467, 2019
BseSI	GKGCMC	3 cut(s)	389, 631, 1771
BseXI	GCAGC	9 cut(s)	583, 1277, 1640, 1827, 2128, 2564, 2632, 2665, 2897
BsgI	GTGCAG	1 cut(s)	1340
Bsh1236I	CGCG	2 cut(s)	115, 2720
BshFI	GGCC	8 cut(s)	273, 948, 1326, 1961, 2206, 2323, 2509, 2801
BshNI	GGYRCC	1 cut(s)	2775
BsiHKAI	GWGCWC	3 cut(s)	182, 886, 1457
BsiHKCI	CYCGRG	2 cut(s)	972, 1622
BsiSI	CCGG	5 cut(s)	845, 1681, 1958, 1995, 2324
BslFI	GGGAC	5 cut(s)	65, 495, 1187, 2167, 2410
BslI	CCNNNNNNNGG	5 cut(s)	292, 928, 1333, 1551, 2036
BsmAI	GTCTC	7 cut(s)	213, 449, 713, 749, 901, 1304, 2271
BsmBI	CGTCTC	2 cut(s)	213, 1304
BsmFI	GGGAC	5 cut(s)	65, 495, 1187, 2167, 2410
BsmI	GAATGC	3 cut(s)	1020, 1933, 2235
BsnI	GGCC	8 cut(s)	273, 948, 1326, 1961, 2206, 2323, 2509, 2801
Bso31I	GGTCTC	1 cut(s)	901
BsoBI	CYCGRG	2 cut(s)	972, 1622
Bsp1286I	GDGCHC	6 cut(s)	182, 389, 631, 886, 1457, 1771
Bsp1407I	TGTACA	3 cut(s)	473, 1026, 2346
Bsp143I	GATC	8 cut(s)	305, 526, 652, 1441, 1648, 2371, 2740, 2932
Bsp1720I	GCTNAGC	1 cut(s)	330
BspACI	CCGC	4 cut(s)	1206, 2010, 2190, 2211
BspANI	GGCC	8 cut(s)	273, 948, 1326, 1961, 2206, 2323, 2509, 2801
BspCNI	CTCAG	9 cut(s)	322, 709, 718, 1201, 2098, 2142, 2452, 2617, 2893
BspFNI	CGCG	2 cut(s)	115, 2720
BspHI	TCATGA	2 cut(s)	337, 1645
BspLI	GGNNCC	8 cut(s)	226, 483, 654, 1260, 1695, 2025, 2742, 2777
BspMAI	CTGCAG	1 cut(s)	1267
BspPI	GGATC	6 cut(s)	313, 647, 660, 2735, 2748, 2927
BspQI	GCTCTTC	2 cut(s)	1414, 1445
BspT107I	GGYRCC	1 cut(s)	2775
BspTI	CTTAAG	2 cut(s)	190, 2624
BspTNI	GGTCTC	1 cut(s)	901
BsrDI	GCAATG	4 cut(s)	516, 876, 1391, 1528
BsrFI	RCCGGY	1 cut(s)	1994
BsrGI	TGTACA	3 cut(s)	473, 1026, 2346
BsrI	ACTGG	5 cut(s)	31, 859, 1496, 2191, 2939
BssAI	RCCGGY	1 cut(s)	1994
BssMI	GATC	8 cut(s)	305, 526, 652, 1441, 1648, 2371, 2740, 2932
BssNAI	GTATAC	1 cut(s)	14
BssT1I	CCWWGG	3 cut(s)	324, 966, 2318
Bst1107I	GTATAC	1 cut(s)	14
Bst2UI	CCWGG	8 cut(s)	287, 416, 731, 1087, 1304, 1552, 2208, 2556
Bst6I	CTCTTC	2 cut(s)	1414, 1445
BstAFI	CTTAAG	2 cut(s)	190, 2624
BstAPI	GCANNNNNTGC	2 cut(s)	1079, 2180
BstAUI	TGTACA	3 cut(s)	473, 1026, 2346
BstC8I	GCNNGC	7 cut(s)	215, 271, 1244, 1339, 1351, 2522, 2901
BstDSI	CCRYGG	2 cut(s)	927, 1789
BstF5I	GGATG	5 cut(s)	544, 1096, 1694, 2195, 2869
BstFNI	CGCG	2 cut(s)	115, 2720
BstH2I	RGCGCY	1 cut(s)	2001
BstHHI	GCGC	2 cut(s)	1521, 2000
BstKTI	GATC	8 cut(s)	308, 529, 655, 1444, 1651, 2374, 2743, 2935
BstMAI	GTCTC	7 cut(s)	213, 449, 713, 749, 901, 1304, 2271
BstMBI	GATC	8 cut(s)	305, 526, 652, 1441, 1648, 2371, 2740, 2932
BstMWI	GCNNNNNNNGC	8 cut(s)	515, 881, 1079, 1126, 1421, 2006, 2180, 2217
BstNI	CCWGG	8 cut(s)	287, 416, 731, 1087, 1304, 1552, 2208, 2556
BstSCI	CCNGG	8 cut(s)	285, 414, 729, 1085, 1302, 1550, 2206, 2554
BstSFI	CTRYAG	3 cut(s)	70, 687, 1263
BstSLI	GKGCMC	3 cut(s)	389, 631, 1771
BstUI	CGCG	2 cut(s)	115, 2720
BstV1I	GCAGC	9 cut(s)	583, 1277, 1640, 1827, 2128, 2564, 2632, 2665, 2897
BstV2I	GAAGAC	1 cut(s)	1787
BstX2I	RGATCY	3 cut(s)	305, 652, 2740
BstXI	CCANNNNNNTGG	4 cut(s)	934, 1093, 1705, 2020
BstYI	RGATCY	3 cut(s)	305, 652, 2740
BstZ17I	GTATAC	1 cut(s)	14
BsuRI	GGCC	8 cut(s)	273, 948, 1326, 1961, 2206, 2323, 2509, 2801
BtgI	CCRYGG	2 cut(s)	927, 1789
BtsCI	GGATG	5 cut(s)	544, 1096, 1694, 2195, 2869
BtsI	GCAGTG	1 cut(s)	1771
BtsIMutI	CAGTG	7 cut(s)	629, 852, 993, 1055, 1477, 1771, 2712
Cac8I	GCNNGC	7 cut(s)	215, 271, 1244, 1339, 1351, 2522, 2901
CciI	TCATGA	2 cut(s)	337, 1645
CfoI	GCGC	2 cut(s)	1521, 2000
Cfr10I	RCCGGY	1 cut(s)	1994
Cfr13I	GGNCC	5 cut(s)	482, 1324, 1488, 2507, 2566
CseI	GACGC	1 cut(s)	2076
Csp6I	GTAC	6 cut(s)	380, 474, 1027, 1878, 2347, 2776
CspCI	CAANNNNNGTGG	4 cut(s)	1236, 1271, 1737, 1772
CviQI	GTAC	6 cut(s)	380, 474, 1027, 1878, 2347, 2776
DpnI	GATC	8 cut(s)	307, 528, 654, 1443, 1650, 2373, 2742, 2934
DpnII	GATC	8 cut(s)	305, 526, 652, 1441, 1648, 2371, 2740, 2932
EaeI	YGGCCR	1 cut(s)	1959
Eam1104I	CTCTTC	2 cut(s)	1414, 1445
EarI	CTCTTC	2 cut(s)	1414, 1445
Ecl136II	GAGCTC	3 cut(s)	180, 884, 1455
Eco130I	CCWWGG	3 cut(s)	324, 966, 2318
Eco147I	AGGCCT	1 cut(s)	948
Eco24I	GRGCYC	3 cut(s)	182, 886, 1457
Eco31I	GGTCTC	1 cut(s)	901
Eco47I	GGWCC	3 cut(s)	482, 1488, 2566
Eco53kI	GAGCTC	3 cut(s)	180, 884, 1455
Eco57I	CTGAAG	2 cut(s)	1017, 1453
Eco88I	CYCGRG	2 cut(s)	972, 1622
EcoICRI	GAGCTC	3 cut(s)	180, 884, 1455
EcoO109I	RGGNCCY	3 cut(s)	482, 1324, 2507
EcoRII	CCWGG	8 cut(s)	285, 414, 729, 1085, 1302, 1550, 2206, 2554
EcoT14I	CCWWGG	3 cut(s)	324, 966, 2318
EcoT22I	ATGCAT	1 cut(s)	985
EcoT38I	GRGCYC	3 cut(s)	182, 886, 1457
ErhI	CCWWGG	3 cut(s)	324, 966, 2318
Esp3I	CGTCTC	2 cut(s)	213, 1304
FaqI	GGGAC	5 cut(s)	65, 495, 1187, 2167, 2410
FbaI	TGATCA	2 cut(s)	526, 1441
FblI	GTMKAC	1 cut(s)	13
FokI	GGATG	5 cut(s)	551, 1103, 1701, 2182, 2876
FriOI	GRGCYC	3 cut(s)	182, 886, 1457
FspBI	CTAG	6 cut(s)	797, 1101, 1383, 1458, 1776, 2319
GlaI	GCGC	2 cut(s)	1520, 1999
GsuI	CTGGAG	2 cut(s)	876, 1286
HaeII	RGCGCY	1 cut(s)	2001
HaeIII	GGCC	8 cut(s)	273, 948, 1326, 1961, 2206, 2323, 2509, 2801
HapII	CCGG	5 cut(s)	845, 1681, 1958, 1995, 2324
HgaI	GACGC	1 cut(s)	2076
HhaI	GCGC	2 cut(s)	1521, 2000
Hin6I	GCGC	2 cut(s)	1519, 1998
HinP1I	GCGC	2 cut(s)	1519, 1998
HincII	GTYRAC	1 cut(s)	739
HindII	GTYRAC	1 cut(s)	739
HindIII	AAGCTT	4 cut(s)	211, 2241, 2340, 2415
HinfI	GANTC	8 cut(s)	395, 406, 1299, 1642, 1979, 2144, 2259, 2401
HpaII	CCGG	5 cut(s)	845, 1681, 1958, 1995, 2324
HphI	GGTGA	6 cut(s)	778, 799, 1022, 1771, 1988, 2051
Hpy166II	GTNNAC	5 cut(s)	14, 32, 739, 1889, 2349
Hpy188I	TCNGA	9 cut(s)	44, 144, 394, 464, 718, 1990, 2077, 2367, 2932
Hpy8I	GTNNAC	5 cut(s)	14, 32, 739, 1889, 2349
HpyAV	CCTTC	6 cut(s)	399, 606, 938, 2468, 2723, 2791
HpyCH4IV	ACGT	1 cut(s)	772
HpyF10VI	GCNNNNNNNGC	8 cut(s)	515, 881, 1079, 1126, 1421, 2006, 2180, 2217
HpySE526I	ACGT	1 cut(s)	772
HspAI	GCGC	2 cut(s)	1519, 1998
KpnI	GGTACC	1 cut(s)	2779
Ksp22I	TGATCA	2 cut(s)	526, 1441
Kzo9I	GATC	8 cut(s)	305, 526, 652, 1441, 1648, 2371, 2740, 2932
LguI	GCTCTTC	2 cut(s)	1414, 1445
LmnI	GCTCC	4 cut(s)	434, 515, 1367, 2661
Lsp1109I	GCAGC	9 cut(s)	583, 1277, 1640, 1827, 2128, 2564, 2632, 2665, 2897
LweI	GCATC	2 cut(s)	527, 809
MaeI	CTAG	6 cut(s)	797, 1101, 1383, 1458, 1776, 2319
MaeII	ACGT	1 cut(s)	772
MaeIII	GTNAC	9 cut(s)	88, 149, 569, 787, 1160, 1385, 1509, 1976, 2765
MalI	GATC	8 cut(s)	307, 528, 654, 1443, 1650, 2373, 2742, 2934
MboI	GATC	8 cut(s)	305, 526, 652, 1441, 1648, 2371, 2740, 2932
MboII	GAAGA	7 cut(s)	229, 655, 1431, 1462, 1787, 1838, 2052
MfeI	CAATTG	1 cut(s)	2352
MflI	RGATCY	3 cut(s)	305, 652, 2740
MhlI	GDGCHC	6 cut(s)	182, 389, 631, 886, 1457, 1771
MlyI	GAGTC	4 cut(s)	415, 1293, 1973, 2138
MmeI	TCCRAC	5 cut(s)	615, 851, 924, 1576, 2013
Mph1103I	ATGCAT	1 cut(s)	985
MroXI	GAANNNNTTC	3 cut(s)	79, 912, 2022
MseI	TTAA	8 cut(s)	171, 191, 503, 648, 1122, 2625, 2639, 2916
MslI	CAYNNNNRTG	2 cut(s)	1703, 2018
MspA1I	CMGCKG	2 cut(s)	20, 1208
MspCI	CTTAAG	2 cut(s)	190, 2624
MspI	CCGG	5 cut(s)	845, 1681, 1958, 1995, 2324
MspR9I	CCNGG	8 cut(s)	287, 416, 731, 1087, 1304, 1552, 2208, 2556
MunI	CAATTG	1 cut(s)	2352
Mva1269I	GAATGC	3 cut(s)	1020, 1933, 2235
MvaI	CCWGG	8 cut(s)	287, 416, 731, 1087, 1304, 1552, 2208, 2556
MvnI	CGCG	2 cut(s)	115, 2720
MwoI	GCNNNNNNNGC	8 cut(s)	515, 881, 1079, 1126, 1421, 2006, 2180, 2217
NdeII	GATC	8 cut(s)	305, 526, 652, 1441, 1648, 2371, 2740, 2932
NlaIV	GGNNCC	8 cut(s)	226, 483, 654, 1260, 1695, 2025, 2742, 2777
NmeAIII	GCCGAG	2 cut(s)	1194, 2211
NmuCI	GTSAC	6 cut(s)	88, 569, 787, 1160, 1509, 1976
NsiI	ATGCAT	1 cut(s)	985
OliI	CACNNNNGTG	1 cut(s)	1703
PaeR7I	CTCGAG	2 cut(s)	972, 1622
PagI	TCATGA	2 cut(s)	337, 1645
PceI	AGGCCT	1 cut(s)	948
PciSI	GCTCTTC	2 cut(s)	1414, 1445
PctI	GAATGC	3 cut(s)	1020, 1933, 2235
PdmI	GAANNNNTTC	3 cut(s)	79, 912, 2022
PfeI	GAWTC	4 cut(s)	395, 1642, 2259, 2401
PfoI	TCCNGGA	1 cut(s)	414
PleI	GAGTC	4 cut(s)	414, 1293, 1973, 2138
PpsI	GAGTC	4 cut(s)	414, 1293, 1973, 2138
PpuMI	RGGWCCY	1 cut(s)	482
PshBI	ATTAAT	2 cut(s)	171, 503
Psp124BI	GAGCTC	3 cut(s)	182, 886, 1457
Psp5II	RGGWCCY	1 cut(s)	482
Psp6I	CCWGG	8 cut(s)	285, 414, 729, 1085, 1302, 1550, 2206, 2554
PspGI	CCWGG	8 cut(s)	285, 414, 729, 1085, 1302, 1550, 2206, 2554
PspN4I	GGNNCC	8 cut(s)	226, 483, 654, 1260, 1695, 2025, 2742, 2777
PspPI	GGNCC	5 cut(s)	482, 1324, 1488, 2507, 2566
PspPPI	RGGWCCY	1 cut(s)	482
PspXI	VCTCGAGB	2 cut(s)	972, 1622
PsrI	GAACNNNNNNTAC	2 cut(s)	1870, 1902
PstI	CTGCAG	1 cut(s)	1267
PsuI	RGATCY	3 cut(s)	305, 652, 2740
PvuII	CAGCTG	1 cut(s)	20
RsaI	GTAC	6 cut(s)	381, 475, 1028, 1879, 2348, 2777
RsaNI	GTAC	6 cut(s)	380, 474, 1027, 1878, 2347, 2776
RseI	CAYNNNNRTG	2 cut(s)	1703, 2018
SacI	GAGCTC	3 cut(s)	182, 886, 1457
SapI	GCTCTTC	2 cut(s)	1414, 1445
SaqAI	TTAA	8 cut(s)	171, 191, 503, 648, 1122, 2625, 2639, 2916
Sau3AI	GATC	8 cut(s)	305, 526, 652, 1441, 1648, 2371, 2740, 2932
Sau96I	GGNCC	5 cut(s)	482, 1324, 1488, 2507, 2566
SchI	GAGTC	4 cut(s)	415, 1293, 1973, 2138
ScrFI	CCNGG	8 cut(s)	287, 416, 731, 1087, 1304, 1552, 2208, 2556
SduI	GDGCHC	6 cut(s)	182, 389, 631, 886, 1457, 1771
SfaNI	GCATC	2 cut(s)	527, 809
SfcI	CTRYAG	3 cut(s)	70, 687, 1263
Sfr274I	CTCGAG	2 cut(s)	972, 1622
SgrAI	CRCCGGYG	1 cut(s)	1994
SinI	GGWCC	3 cut(s)	482, 1488, 2566
SlaI	CTCGAG	2 cut(s)	972, 1622
SmiMI	CAYNNNNRTG	2 cut(s)	1703, 2018
SseBI	AGGCCT	1 cut(s)	948
SsiI	CCGC	4 cut(s)	1206, 2010, 2190, 2211
SspI	AATATT	2 cut(s)	1201, 1854
SspMI	CTAG	6 cut(s)	797, 1101, 1383, 1458, 1776, 2319
SstI	GAGCTC	3 cut(s)	182, 886, 1457
StuI	AGGCCT	1 cut(s)	948
StyD4I	CCNGG	8 cut(s)	285, 414, 729, 1085, 1302, 1550, 2206, 2554
StyI	CCWWGG	3 cut(s)	324, 966, 2318
TaiI	ACGT	1 cut(s)	775
TaqI	TCGA	6 cut(s)	240, 880, 973, 1623, 2336, 2682
TatI	WGTACW	5 cut(s)	379, 473, 1026, 1877, 2346
TauI	GCSGC	2 cut(s)	1208, 2012
TfiI	GAWTC	4 cut(s)	395, 1642, 2259, 2401
Tru1I	TTAA	8 cut(s)	171, 191, 503, 648, 1122, 2625, 2639, 2916
Tru9I	TTAA	8 cut(s)	171, 191, 503, 648, 1122, 2625, 2639, 2916
TscAI	CASTG	7 cut(s)	636, 859, 1000, 1062, 1477, 1771, 2712
TseFI	GTSAC	6 cut(s)	88, 569, 787, 1160, 1509, 1976
TseI	GCWGC	9 cut(s)	596, 1265, 1628, 1840, 2116, 2577, 2620, 2653, 2885
Tsp45I	GTSAC	6 cut(s)	88, 569, 787, 1160, 1509, 1976
TspGWI	ACGGA	1 cut(s)	1280
TspRI	CASTG	7 cut(s)	636, 859, 1000, 1062, 1477, 1771, 2712
Vha464I	CTTAAG	2 cut(s)	190, 2624
VpaK11BI	GGWCC	3 cut(s)	482, 1488, 2566
VspI	ATTAAT	2 cut(s)	171, 503
XapI	RAATTY	6 cut(s)	138, 233, 908, 1179, 1536, 2176
XcmI	CCANNNNNNNNNTGG	1 cut(s)	2786
XhoI	CTCGAG	2 cut(s)	972, 1622
XmaJI	CCTAGG	1 cut(s)	2318
XmiI	GTMKAC	1 cut(s)	13
XmnI	GAANNNNTTC	3 cut(s)	79, 912, 2022
XspI	CTAG	6 cut(s)	797, 1101, 1383, 1458, 1776, 2319
Zsp2I	ATGCAT	1 cut(s)	985

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.