Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0005148

Physical Location & Seq

Genomic Coordinates Forward (+)

68222057 .. 68228468

Gene Structure 6412 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0555400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3573 bp

ATGTTTACGCCGCAGCGGTGGTCGGGTTGGTCTCGGACGCCCAAAACCGGGGCTGAGAAGACCGGAACTGGGTCCGGGACGACGAATATGAATTCCGGCAAGTCGAAGTTGAACTCCGGCGAGGTGGGGAAAGGGGTTGTCTTGTTTGAACCCACGACGCCGGCTTCGGGTCTTTTAGGGAATGGTGACGCGGCTTCCGACCGGGAAGGGATAGCTCGGAGGCTTTTGGAGCTCGAAAACGAGCTTTATGAATACCAATACAATATGGGGTTGCTCCTGATTGAGAAAAAGGAGTGGACGTCTAGGCAAGAAGAACTCGGGCAGTCATTGGCAGAAGCAAAAGATGCTCTCAAAAGAGAACAAGCAGCCCATTTGATTGCAACTGCTGAAATTGAAAAGCGAGAGGAGAATTTGAGGAAGGCCTTGGGAGTTGAGAAGCAGTGTGTGCTTGATCTAGAGAAGGCTTTGCGTGAGATCCGTTCAGAGATTGCAGAAATTAAGTTTACTGCTGATTCGAAGTTGGCAGAGGCAAATGCTTTGGTTGCTAGCATAGAAGAAAAATCACTGGAGTTAGAGGCAAAGTTGCGTACTGCTGATGCGAAGCTAGCTGAAGTCAACCGGAAAAGTTCGGAGATAGAGAGCAAAACAATGGACTTGGAGGCTCGAGAAAGTGCCCTTCGAAGAGATAGATCCTCCTTCAATTCAGAACAGGAAGCACGGGAGAATTCTTTGGCCAAGTGGAGGGAGGACTTACTAGAATGGGAAAGAAAATTGCAAGAGGGAGAAGAGAGGCTAGCCAGAGGTCAAAGAAATATCAACCAAAGAGAGGAGAGGGCAAATGAGCACGATAGGTCTTTGAAGAATAAAGAGAAGGATCTGGAAGACGCAGAGAAGAAAATTGATGCAACTAACGAAACACTGAAAAGAAAAGAAGATGATTTTACGAGCAGGCTAGCAAATCTAACTTTAAAAGAAAAGGAATATGATGCTATGAGAATGAACTTAGAAGTGAAGGAGAAGGAGTTACTAGCTCTGGAAGAAAAGCTCAATGCTAGAGAAAGAGTTGAGATCCAAAAGGCTACTGATGAACACAATGCCATTCTGCATGCAAAACAATGTGATTTTGAGTTGGAAATTGATCAAAAGAGAAAATTGTTGGATGATGAATTGAGAAACAGGTTGGTTGATGTGGAGAAGAAGGAATCTGAAGTCAATCATATGGAGGAGAAAGTCACTAAAAGGGAGCAAGCATTGGAAAAGAGAGGGGAAAAGTTCAGGGAGAAAGAGAAGGACTATGAATCTAAAATGAAGGCCTTGAAGGAAAAAGAGAAATCTATTAAATTGGAGGAGAAGAACTTTGAAGCGGAGAAGAAACAGTTACTTGCTGATAAAGAAGATATGGCTAGGCTTTTGGCTGAAATGGAGCAGATAAAGGCTGATAATGAAGATAAGCTACGGAAGATCAGTGAGGAGAGTGATCGAATGAAAGTAAGTGAAGAAGAGAGGTCACAGTGTCAGCGGTTGCAGTCAGAATTGAAACAGGAAATTGACAAGTACATGCAACAGAAAGAACTGCTTTTAAGGGAAGCTGAAGATTTGAAGCAGCAAAAGGAGCTTTTTGAGAAAGAGTGGGAAGAGCTGGATGACAAAAGAGCTCAGATTGAGAAAGAGCTGAAGAGTGTGAGAGAACAGAAAGAAGAAGTCGAAAAGCTCAATCGAATTGAAGTAGAGAGGTTGAAAAATGAAAGAGTGGTGGCACAGGATTGTATACAAAGAGAGCGAGAAGATCTTGCCTTGGCCCAGGAATCATTTGCCGCCCATATGGAGCATGAGAAGGCAGTATTAGCTGAAAAAGTTCAAAGCGAGAAAAGTGAAATGGTTCATGAATTTGAAGCTCTGAAAAGAGAACTTGAAACTGATATGCAGAAGCGGCTAGAGGAGTTGGAGAAACCCTTACGGGAAAGGGAGAACTCTTTTGCAGAAGAAAGAGAGAGAGAATTAGACAATGTTAATTACTTAAGAGATGTTGCTAGAAGAGAAATGGAGGACATCAAGGCTGAAAGAATTAAAATTGGAAAAGAGAGACAAGAAGCTGATGAAAATAAGGAGCATCTTGAAAGGCAGCGAGTTGAAATTAGGAAAGACATTGATGGACTTCTCGATCTTAGCCGGAAACTGAGAGATCAGCGAGAACAATTTATTAAGGAAAGAGAACACTTTATTTCATATGTTGAGAAGCTCAAAGGTTGCAAGAACTGTGGTGACATAATCTCTGAGTTTGTGCTTTCTAATCTACAACCTTTAGCTGAAACTGAAGACGCGGAGGTCCTTCCTTTGCCAAGACTGAGTGATGATTATGTGAAGGTAAGTTACAATGAAAGCCTGGCTGCTGCTGAGAGGAACAATAATGAGAAGTCTCCTGGTGCTGATTCAAAATCTCCAGTTTCTGGTGGAATGTCTTGGCTTCGCAAGTGCACCTCAAAGATTCTTATTTTCTCTCCAGGGAAAAAGACCGAGTCTGGTGCTCTACACAATTTGGCAAAGGAAACCCCATTTTCACACGAGCAAGATAGAGAACCATCCAATAGGTTACATGCTGAAAATGAAGCGGAGGTTTCTTTTGGAGTGGCAAGTGGTTCTTTAGATGTGCAGAGAATCCAATCTGACAACAGCATCAGAGAGGTTGATGCTGGCCAATATCCTTCAGCTGATGAACACATCAGTGAAGCACCCAATGTGTTAAAAGATTCACAGCCAACTAATTTGAAGGGTGGTCGTCAGAAGCCACGTGGGAGAGGCAGGGCCACAGTTAACAGAACACACACTGTGAAAGCAGTTGTCAAAGATGCTAAGGCTATACTTGGAGAGGCTTTTGAAACAAACGACGGTCAGTATCAGAATGGGACCGCTGAGGATTCTGCCAATATGTATACTGAAAGCCATGACGATTCTAGTCTTGCTGGTAAAAGAACAAGAAGAAATGGACGGAAGCGTGGCCGTGCTCAGACATCTCAAGTTGCTGTGAGTGAGCATGGTGGGGATGATAGTGAACGGTCTGACAGTGTCATGACCGGCCAGCGCAAGAAGAGGCGAGAAAAAGTTCCTGCAGCTGAGCAACCCCCAAATGAAAGACGGTACAATCTCCGGAGATCCAAAGCTGGCGGTAAAGTTGCTACTGCAAAAGTCTCACACGACCTTGTCAAACAAAATGAAGAGGTTGATAGTGCCAGAGATACGGAGGCGGAGATTCTCTACTCCAAAGCTGCTCCTGCTACTTCAACAGGATTTGCTGGCGAGAATGGTGGAAGCACACACTATGTGCAGTGTGGGACTCTTGCAGACACTCAAGATGGTGGTGCAGATGAAGTAGAAAATTCGGCTGAGAATATGGCAGTGAGTGAAGCAAATGGTTCCACAGAAGGGGGTCAGGAGTATGTTGATGGAGAGGAGTACAGGAGTGAATCACGTGGGGAGGATGCAAATCTCATTGAAGATGATGATGATGATGATGAGTCTGAACATCCTGGTGAGGCCTCGATAGGGAAGAAGGTTTGGACCTTTCTCACAACATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006725 GO:0006732 GO:0006733 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009108 GO:0009117 GO:0009165 GO:0009435 GO:0009507 GO:0009536 GO:0009987 GO:0018130 GO:0019359 GO:0019362 GO:0019363 GO:0019438 GO:0019637 GO:0019674 GO:0034641 GO:0034654 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046496 GO:0051186 GO:0051188 GO:0055086 GO:0071704 GO:0072524 GO:0072525 GO:0090407 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00250 ko00760 ko01100 map00250 map00760 map01100

Pfam Domains

Protein Families

FAD_binding_2 Succ_DH_flav_C

Protein Analysis

1190

Amino Acids

135.98

Weight (kDa)

5.18

Isoelectric Point (pI)

45.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005148)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G14760
fragaria_vesca	FvH4_6g50750 FvH4_6g50750 FvH4_6g50750 FvH4_6g50750 FvH4_6g50750
malus_domestica	MD09G1032700.v1.1 MD17G1034300.v1.1
prunus_persica	Prupe.3G285300_v2.0.a1 Prupe.3G285300_v2.0.a1 Prupe.3G285300_v2.0.a1 Prupe.3G285300_v2.0.a1 Prupe.3G285300_v2.0.a1 Prupe.3G285300_v2.0.a1 Prupe.3G285300_v2.0.a1 Prupe.3G285300_v2.0.a1 Prupe.3G285300_v2.0.a1
pyrus_communis	pycom111g02610 pycom17g03170
rosa_chinensis	RchiOBHm_Chr2g0171691
rosa_laevigata	RLG00000022029
rosa_multiflora	Rmu_ssc0000252.1_g000010
rosa_roxburghii	Rroxscaffold_2G00080520
rosa_rugosa	Rorug02G0555400
rosa_samantha	Rh2AG630400 Rh2BG640900 Rh2BG643400 Rh2CG609100 Rh2DG651800
rosa_wichuraiana	Rw2G052170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	2324
AatII	GACGTC	1 cut(s)	302
AccB7I	CCANNNNNTGG	1 cut(s)	2447
AccI	GTMKAC	2 cut(s)	1768, 2930
AccII	CGCG	2 cut(s)	191, 2321
AccIII	TCCGGA	1 cut(s)	3144
AclWI	GGATC	5 cut(s)	469, 684, 882, 1063, 3144
AcoI	YGGCCR	4 cut(s)	732, 2692, 2995, 3073
AcsI	RAATTY	5 cut(s)	91, 409, 724, 1886, 3373
AcuI	CTGAAG	6 cut(s)	630, 1227, 1611, 1694, 2334, 2688
AcvI	CACGTG	2 cut(s)	2789, 3467
AcyI	GRCGYC	3 cut(s)	38, 158, 299
AdeI	CACNNNGTG	2 cut(s)	2827, 3319
AfaI	GTAC	4 cut(s)	589, 1556, 3137, 3452
AfiI	CCNNNNNNNGG	9 cut(s)	47, 48, 69, 167, 741, 826, 2447, 3420, 3540
AflII	CTTAAG	1 cut(s)	2017
AjnI	CCWGG	5 cut(s)	1800, 2382, 2419, 2500, 3523
AleI	CACNNNNGTG	1 cut(s)	2721
Alw21I	GWGCWC	6 cut(s)	234, 846, 1657, 2477, 2527, 3004
Alw26I	GTCTC	4 cut(s)	36, 2077, 2421, 3190
Alw44I	GTGCAC	1 cut(s)	2473
AlwI	GGATC	5 cut(s)	469, 684, 882, 1063, 3144
AlwNI	CAGNNNCTG	1 cut(s)	2447
Ama87I	CYCGRG	2 cut(s)	317, 663
Aor13HI	TCCGGA	1 cut(s)	3144
AoxI	GGCC	9 cut(s)	420, 732, 1311, 1797, 2692, 2802, 2995, 3073, 3531
ApaLI	GTGCAC	1 cut(s)	2473
ApeKI	GCWGC	8 cut(s)	13, 365, 1603, 2122, 2387, 2390, 3107, 3263
ApoI	RAATTY	5 cut(s)	91, 409, 724, 1886, 3373
ArsI	GACNNNNNNTTYG	2 cut(s)	148, 180
Asp700I	GAANNNNTTC	3 cut(s)	1854, 1878, 3099
AspLEI	GCGC	1 cut(s)	3081
AspS9I	GGNCC	6 cut(s)	72, 1798, 2326, 2802, 2904, 3555
AsuC2I	CCSGG	3 cut(s)	49, 76, 203
AsuHPI	GGTGA	3 cut(s)	197, 2273, 3539
AsuII	TTCGAA	2 cut(s)	515, 679
AsuNHI	GCTAGC	4 cut(s)	545, 604, 793, 952
AvaI	CYCGRG	2 cut(s)	317, 663
AvaII	GGWCC	4 cut(s)	72, 2326, 2904, 3555
BaeGI	GKGCMC	2 cut(s)	676, 2477
BalI	TGGCCA	2 cut(s)	734, 2694
BanII	GRGCYC	2 cut(s)	234, 1657
BarI	GAAGNNNNNNTAC	4 cut(s)	1437, 1469, 2354, 2386
BauI	CACGAG	1 cut(s)	2561
BbrPI	CACGTG	2 cut(s)	2789, 3467
BbsI	GAAGAC	3 cut(s)	65, 888, 2322
Bbv12I	GWGCWC	6 cut(s)	234, 846, 1657, 2477, 2527, 3004
BbvCI	CCTCAGC	1 cut(s)	2910
BbvI	GCAGC	8 cut(s)	25, 377, 1615, 2134, 2374, 2377, 3119, 3250
BccI	CCATC	4 cut(s)	2144, 2587, 3344, 3434
BceAI	ACGGC	1 cut(s)	2982
BcgI	CGANNNNNNTGC	2 cut(s)	2504, 2538
BciT130I	CCWGG	5 cut(s)	1802, 2384, 2421, 2502, 3525
BclI	TGATCA	1 cut(s)	1138
BcnI	CCSGG	3 cut(s)	49, 76, 203
BcoDI	GTCTC	4 cut(s)	36, 2077, 2421, 3190
BfmI	CTRYAG	1 cut(s)	3105
BfrI	CTTAAG	1 cut(s)	2017
BglII	AGATCT	1 cut(s)	1786
BlpI	GCTNAGC	1 cut(s)	3111
Bme1390I	CCNGG	8 cut(s)	49, 76, 203, 1802, 2384, 2421, 2502, 3525
Bme18I	GGWCC	4 cut(s)	72, 2326, 2904, 3555
BmeT110I	CYCGRG	2 cut(s)	317, 663
BmgT120I	GGNCC	6 cut(s)	72, 1798, 2326, 2802, 2904, 3555
BmiI	GGNNCC	3 cut(s)	73, 2905, 3412
BmrFI	CCNGG	8 cut(s)	49, 76, 203, 1802, 2384, 2421, 2502, 3525
BmrI	ACTGGG	1 cut(s)	78
BmsI	GCATC	9 cut(s)	334, 586, 892, 976, 2119, 2677, 2682, 2836, 3466
BmtI	GCTAGC	4 cut(s)	549, 608, 797, 956
BmuI	ACTGGG	1 cut(s)	78
BpiI	GAAGAC	3 cut(s)	65, 888, 2322
BpmI	CTGGAG	3 cut(s)	587, 2424, 2484
Bpu10I	CCTNAGC	2 cut(s)	2850, 2910
Bpu1102I	GCTNAGC	1 cut(s)	3111
Bpu14I	TTCGAA	2 cut(s)	515, 679
BpuEI	CTTGAG	2 cut(s)	2997, 3330
BpuMI	CCSGG	3 cut(s)	49, 76, 203
BsaAI	YACGTR	2 cut(s)	2789, 3467
BsaBI	GATNNNNATC	1 cut(s)	3480
BsaHI	GRCGYC	3 cut(s)	38, 158, 299
BsaI	GGTCTC	1 cut(s)	36
BsaJI	CCNNGG	5 cut(s)	48, 423, 1794, 1800, 2501
BsaWI	WCCGGW	3 cut(s)	62, 618, 3144
BsaXI	ACNNNNNCTCC	4 cut(s)	284, 314, 1007, 1037
Bsc4I	CCNNNNNNNGG	9 cut(s)	47, 48, 69, 167, 741, 826, 2447, 3420, 3540
Bse118I	RCCGGY	2 cut(s)	160, 3071
Bse1I	ACTGG	3 cut(s)	73, 570, 2441
Bse8I	GATNNNNATC	1 cut(s)	3480
BseAI	TCCGGA	1 cut(s)	3144
BseBI	CCWGG	5 cut(s)	1802, 2384, 2421, 2502, 3525
BseDI	CCNNGG	5 cut(s)	48, 423, 1794, 1800, 2501
BseGI	GGATG	6 cut(s)	1165, 1648, 2579, 3046, 3481, 3520
BseJI	GATNNNNATC	1 cut(s)	3480
BseLI	CCNNNNNNNGG	9 cut(s)	47, 48, 69, 167, 741, 826, 2447, 3420, 3540
BseNI	ACTGG	3 cut(s)	73, 570, 2441
BseRI	GAGGAG	7 cut(s)	419, 842, 1238, 1361, 1484, 1952, 3461
BseSI	GKGCMC	2 cut(s)	676, 2477
BseXI	GCAGC	8 cut(s)	25, 377, 1615, 2134, 2374, 2377, 3119, 3250
BsgI	GTGCAG	3 cut(s)	2669, 3341, 3378
Bsh1236I	CGCG	2 cut(s)	191, 2321
Bsh1285I	CGRYCG	1 cut(s)	202
BshFI	GGCC	9 cut(s)	422, 734, 1313, 1799, 2694, 2804, 2997, 3075, 3533
BsiEI	CGRYCG	1 cut(s)	202
BsiHKAI	GWGCWC	6 cut(s)	234, 846, 1657, 2477, 2527, 3004
BsiHKCI	CYCGRG	2 cut(s)	317, 663
BslFI	GGGAC	3 cut(s)	91, 2917, 3343
BslI	CCNNNNNNNGG	9 cut(s)	47, 48, 69, 167, 741, 826, 2447, 3420, 3540
BsmAI	GTCTC	4 cut(s)	36, 2077, 2421, 3190
BsmFI	GGGAC	3 cut(s)	91, 2917, 3343
BsnI	GGCC	9 cut(s)	422, 734, 1313, 1799, 2694, 2804, 2997, 3075, 3533
Bso31I	GGTCTC	1 cut(s)	36
BsoBI	CYCGRG	2 cut(s)	317, 663
Bsp119I	TTCGAA	2 cut(s)	515, 679
Bsp1286I	GDGCHC	7 cut(s)	234, 676, 846, 1657, 2477, 2527, 3004
Bsp13I	TCCGGA	1 cut(s)	3144
Bsp1720I	GCTNAGC	1 cut(s)	3111
BspANI	GGCC	9 cut(s)	422, 734, 1313, 1799, 2694, 2804, 2997, 3075, 3533
BspEI	TCCGGA	1 cut(s)	3144
BspFNI	CGCG	2 cut(s)	191, 2321
BspHI	TCATGA	2 cut(s)	1882, 3066
BspLI	GGNNCC	3 cut(s)	73, 2905, 3412
BspMAI	CTGCAG	1 cut(s)	3109
BspOI	GCTAGC	4 cut(s)	549, 608, 797, 956
BspPI	GGATC	5 cut(s)	469, 684, 882, 1063, 3144
BspQI	GCTCTTC	1 cut(s)	1629
BspT104I	TTCGAA	2 cut(s)	515, 679
BspTI	CTTAAG	1 cut(s)	2017
BspTNI	GGTCTC	1 cut(s)	36
BsrFI	RCCGGY	2 cut(s)	160, 3071
BsrI	ACTGG	3 cut(s)	73, 570, 2441
BssAI	RCCGGY	2 cut(s)	160, 3071
BssECI	CCNNGG	5 cut(s)	48, 423, 1794, 1800, 2501
BssNAI	GTATAC	2 cut(s)	1769, 2931
BssNI	GRCGYC	3 cut(s)	38, 158, 299
BssSI	CACGAG	1 cut(s)	2561
BssT1I	CCWWGG	2 cut(s)	423, 1794
Bst1107I	GTATAC	2 cut(s)	1769, 2931
Bst2BI	CACGAG	1 cut(s)	2561
Bst2UI	CCWGG	5 cut(s)	1802, 2384, 2421, 2502, 3525
Bst4CI	ACNGT	9 cut(s)	1377, 1512, 2258, 2809, 2827, 2888, 3054, 3062, 3135
Bst6I	CTCTTC	8 cut(s)	676, 780, 1494, 1629, 1670, 2029, 3080, 3207
BstACI	GRCGYC	3 cut(s)	38, 158, 299
BstAFI	CTTAAG	1 cut(s)	2017
BstAPI	GCANNNNNTGC	2 cut(s)	344, 445
BstBAI	YACGTR	2 cut(s)	2789, 3467
BstBI	TTCGAA	2 cut(s)	515, 679
BstF5I	GGATG	6 cut(s)	1165, 1648, 2579, 3046, 3481, 3520
BstFNI	CGCG	2 cut(s)	191, 2321
BstHHI	GCGC	1 cut(s)	3081
BstMAI	GTCTC	4 cut(s)	36, 2077, 2421, 3190
BstMCI	CGRYCG	1 cut(s)	202
BstMWI	GCNNNNNNNGC	9 cut(s)	229, 344, 445, 542, 605, 1612, 1844, 1930, 3269
BstNI	CCWGG	5 cut(s)	1802, 2384, 2421, 2502, 3525
BstNSI	RCATGY	3 cut(s)	1109, 1561, 2597
BstSCI	CCNGG	8 cut(s)	47, 74, 201, 1800, 2382, 2419, 2500, 3523
BstSFI	CTRYAG	1 cut(s)	3105
BstSLI	GKGCMC	2 cut(s)	676, 2477
BstUI	CGCG	2 cut(s)	191, 2321
BstV1I	GCAGC	8 cut(s)	25, 377, 1615, 2134, 2374, 2377, 3119, 3250
BstV2I	GAAGAC	3 cut(s)	65, 888, 2322
BstX2I	RGATCY	6 cut(s)	474, 689, 874, 1068, 1786, 3149
BstYI	RGATCY	6 cut(s)	474, 689, 874, 1068, 1786, 3149
BstZ17I	GTATAC	2 cut(s)	1769, 2931
BsuRI	GGCC	9 cut(s)	422, 734, 1313, 1799, 2694, 2804, 2997, 3075, 3533
BtsCI	GGATG	6 cut(s)	1165, 1648, 2579, 3046, 3481, 3520
BtsI	GCAGTG	3 cut(s)	446, 3329, 3399
CaiI	CAGNNNCTG	1 cut(s)	2447
CciI	TCATGA	2 cut(s)	1882, 3066
CfoI	GCGC	1 cut(s)	3081
Cfr10I	RCCGGY	2 cut(s)	160, 3071
Cfr13I	GGNCC	6 cut(s)	72, 1798, 2326, 2802, 2904, 3555
CseI	GACGC	5 cut(s)	46, 166, 197, 893, 2327
Csp6I	GTAC	4 cut(s)	588, 1555, 3136, 3451
CspCI	CAANNNNNGTGG	2 cut(s)	2239, 2274
CviAII	CATG	8 cut(s)	1106, 1558, 1829, 1883, 2594, 2942, 3032, 3067
CviQI	GTAC	4 cut(s)	588, 1555, 3136, 3451
DraI	TTTAAA	1 cut(s)	969
DraIII	CACNNNGTG	2 cut(s)	2827, 3319
DrdI	GACNNNNNNGTC	1 cut(s)	2324
DseDI	GACNNNNNNGTC	1 cut(s)	2324
EaeI	YGGCCR	4 cut(s)	732, 2692, 2995, 3073
Eam1104I	CTCTTC	8 cut(s)	676, 780, 1494, 1629, 1670, 2029, 3080, 3207
EarI	CTCTTC	8 cut(s)	676, 780, 1494, 1629, 1670, 2029, 3080, 3207
EciI	GGCGGA	1 cut(s)	3257
Ecl136II	GAGCTC	2 cut(s)	232, 1655
Eco130I	CCWWGG	2 cut(s)	423, 1794
Eco147I	AGGCCT	3 cut(s)	422, 1313, 3533
Eco24I	GRGCYC	2 cut(s)	234, 1657
Eco31I	GGTCTC	1 cut(s)	36
Eco47I	GGWCC	4 cut(s)	72, 2326, 2904, 3555
Eco53kI	GAGCTC	2 cut(s)	232, 1655
Eco57I	CTGAAG	6 cut(s)	630, 1227, 1611, 1694, 2334, 2688
Eco72I	CACGTG	2 cut(s)	2789, 3467
Eco88I	CYCGRG	2 cut(s)	317, 663
EcoICRI	GAGCTC	2 cut(s)	232, 1655
EcoO109I	RGGNCCY	1 cut(s)	2326
EcoRI	GAATTC	2 cut(s)	91, 724
EcoRII	CCWGG	5 cut(s)	1800, 2382, 2419, 2500, 3523
EcoT14I	CCWWGG	2 cut(s)	423, 1794
EcoT38I	GRGCYC	2 cut(s)	234, 1657
ErhI	CCWWGG	2 cut(s)	423, 1794
FaeI	CATG	8 cut(s)	1109, 1561, 1832, 1886, 2597, 2945, 3035, 3070
FalI	AAGNNNNNCTT	4 cut(s)	1560, 1592, 2623, 2655
FaqI	GGGAC	3 cut(s)	91, 2917, 3343
FatI	CATG	8 cut(s)	1105, 1557, 1828, 1882, 2593, 2941, 3031, 3066
FauNDI	CATATG	3 cut(s)	1218, 1821, 2227
FbaI	TGATCA	1 cut(s)	1138
FblI	GTMKAC	2 cut(s)	1768, 2930
FokI	GGATG	6 cut(s)	1172, 1655, 2566, 3053, 3488, 3507
FriOI	GRGCYC	2 cut(s)	234, 1657
GlaI	GCGC	1 cut(s)	3080
GsuI	CTGGAG	3 cut(s)	587, 2424, 2484
HaeIII	GGCC	9 cut(s)	422, 734, 1313, 1799, 2694, 2804, 2997, 3075, 3533
HgaI	GACGC	5 cut(s)	46, 166, 197, 893, 2327
HhaI	GCGC	1 cut(s)	3081
Hin1I	GRCGYC	3 cut(s)	38, 158, 299
Hin1II	CATG	8 cut(s)	1109, 1561, 1832, 1886, 2597, 2945, 3035, 3070
Hin6I	GCGC	1 cut(s)	3079
HinP1I	GCGC	1 cut(s)	3079
HincII	GTYRAC	2 cut(s)	616, 2812
HindII	GTYRAC	2 cut(s)	616, 2812
HpaI	GTTAAC	1 cut(s)	2812
HphI	GGTGA	3 cut(s)	197, 2273, 3539
Hpy166II	GTNNAC	9 cut(s)	6, 297, 504, 616, 1769, 2475, 2812, 2931, 3050
Hpy8I	GTNNAC	9 cut(s)	6, 297, 504, 616, 1769, 2475, 2812, 2931, 3050
Hpy99I	CGWCG	3 cut(s)	85, 160, 2888
HpyCH4III	ACNGT	9 cut(s)	1377, 1512, 2258, 2809, 2827, 2888, 3054, 3062, 3135
HpyCH4IV	ACGT	3 cut(s)	299, 2788, 3466
HpyF10VI	GCNNNNNNNGC	9 cut(s)	229, 344, 445, 542, 605, 1612, 1844, 1930, 3269
HpySE526I	ACGT	3 cut(s)	299, 2788, 3466
Hsp92I	GRCGYC	3 cut(s)	38, 158, 299
Hsp92II	CATG	8 cut(s)	1109, 1561, 1832, 1886, 2597, 2945, 3035, 3070
HspAI	GCGC	1 cut(s)	3079
Kpn2I	TCCGGA	1 cut(s)	3144
KroI	GCCGGC	1 cut(s)	160
KroNI	GCCGGC	1 cut(s)	162
Ksp22I	TGATCA	1 cut(s)	1138
KspAI	GTTAAC	1 cut(s)	2812
LguI	GCTCTTC	1 cut(s)	1629
LmnI	GCTCC	8 cut(s)	229, 279, 1243, 1423, 1612, 1825, 2107, 3271
Lsp1109I	GCAGC	8 cut(s)	25, 377, 1615, 2134, 2374, 2377, 3119, 3250
LweI	GCATC	9 cut(s)	334, 586, 892, 976, 2119, 2677, 2682, 2836, 3466
MaeII	ACGT	3 cut(s)	299, 2788, 3466
MaeIII	GTNAC	8 cut(s)	185, 1023, 1231, 1377, 1506, 2261, 2369, 2589
MflI	RGATCY	6 cut(s)	474, 689, 874, 1068, 1786, 3149
MhlI	GDGCHC	7 cut(s)	234, 676, 846, 1657, 2477, 2527, 3004
MlsI	TGGCCA	2 cut(s)	734, 2694
MluNI	TGGCCA	2 cut(s)	734, 2694
MlyI	GAGTC	3 cut(s)	2525, 3325, 3521
MmeI	TCCRAC	4 cut(s)	222, 1110, 1137, 1923
Mox20I	TGGCCA	2 cut(s)	734, 2694
MroI	TCCGGA	1 cut(s)	3144
MroNI	GCCGGC	1 cut(s)	160
MroXI	GAANNNNTTC	3 cut(s)	1854, 1878, 3099
MscI	TGGCCA	2 cut(s)	734, 2694
MslI	CAYNNNNRTG	2 cut(s)	2721, 3525
Msp20I	TGGCCA	2 cut(s)	734, 2694
MspA1I	CMGCKG	5 cut(s)	16, 1519, 2708, 2909, 3110
MspCI	CTTAAG	1 cut(s)	2017
MspR9I	CCNGG	8 cut(s)	49, 76, 203, 1802, 2384, 2421, 2502, 3525
MvaI	CCWGG	5 cut(s)	1802, 2384, 2421, 2502, 3525
MvnI	CGCG	2 cut(s)	191, 2321
MwoI	GCNNNNNNNGC	9 cut(s)	229, 344, 445, 542, 605, 1612, 1844, 1930, 3269
NaeI	GCCGGC	1 cut(s)	162
NciI	CCSGG	3 cut(s)	49, 76, 203
NdeI	CATATG	3 cut(s)	1218, 1821, 2227
NgoMIV	GCCGGC	1 cut(s)	160
NheI	GCTAGC	4 cut(s)	545, 604, 793, 952
NlaIII	CATG	8 cut(s)	1109, 1561, 1832, 1886, 2597, 2945, 3035, 3070
NlaIV	GGNNCC	3 cut(s)	73, 2905, 3412
NmuCI	GTSAC	4 cut(s)	185, 1231, 1506, 2261
NspI	RCATGY	3 cut(s)	1109, 1561, 2597
NspV	TTCGAA	2 cut(s)	515, 679
OliI	CACNNNNGTG	1 cut(s)	2721
PaeI	GCATGC	1 cut(s)	1109
PaeR7I	CTCGAG	1 cut(s)	663
PagI	TCATGA	2 cut(s)	1882, 3066
PceI	AGGCCT	3 cut(s)	422, 1313, 3533
PciSI	GCTCTTC	1 cut(s)	1629
PcsI	WCGNNNNNNNCGW	1 cut(s)	195
PdiI	GCCGGC	1 cut(s)	162
PdmI	GAANNNNTTC	3 cut(s)	1854, 1878, 3099
PflFI	GACNNNGTC	3 cut(s)	2515, 3062, 3197
PflMI	CCANNNNNTGG	1 cut(s)	2447
PfoI	TCCNGGA	1 cut(s)	74
PleI	GAGTC	3 cut(s)	2524, 3325, 3520
PmaCI	CACGTG	2 cut(s)	2789, 3467
PmlI	CACGTG	2 cut(s)	2789, 3467
PpsI	GAGTC	3 cut(s)	2524, 3325, 3520
Ppu21I	YACGTR	2 cut(s)	2789, 3467
PpuMI	RGGWCCY	1 cut(s)	2326
Psp124BI	GAGCTC	2 cut(s)	234, 1657
Psp5II	RGGWCCY	1 cut(s)	2326
Psp6I	CCWGG	5 cut(s)	1800, 2382, 2419, 2500, 3523
PspCI	CACGTG	2 cut(s)	2789, 3467
PspGI	CCWGG	5 cut(s)	1800, 2382, 2419, 2500, 3523
PspN4I	GGNNCC	3 cut(s)	73, 2905, 3412
PspPI	GGNCC	6 cut(s)	72, 1798, 2326, 2802, 2904, 3555
PspPPI	RGGWCCY	1 cut(s)	2326
PstI	CTGCAG	1 cut(s)	3109
PstNI	CAGNNNCTG	1 cut(s)	2447
PsuI	RGATCY	6 cut(s)	474, 689, 874, 1068, 1786, 3149
PsyI	GACNNNGTC	3 cut(s)	2515, 3062, 3197
PvuII	CAGCTG	2 cut(s)	2708, 3110
RsaI	GTAC	4 cut(s)	589, 1556, 3137, 3452
RsaNI	GTAC	4 cut(s)	588, 1555, 3136, 3451
RseI	CAYNNNNRTG	2 cut(s)	2721, 3525
SacI	GAGCTC	2 cut(s)	234, 1657
SapI	GCTCTTC	1 cut(s)	1629
Sau96I	GGNCC	6 cut(s)	72, 1798, 2326, 2802, 2904, 3555
SchI	GAGTC	3 cut(s)	2525, 3325, 3521
ScrFI	CCNGG	8 cut(s)	49, 76, 203, 1802, 2384, 2421, 2502, 3525
SduI	GDGCHC	7 cut(s)	234, 676, 846, 1657, 2477, 2527, 3004
SfaNI	GCATC	9 cut(s)	334, 586, 892, 976, 2119, 2677, 2682, 2836, 3466
SfcI	CTRYAG	1 cut(s)	3105
Sfr274I	CTCGAG	1 cut(s)	663
SfuI	TTCGAA	2 cut(s)	515, 679
SinI	GGWCC	4 cut(s)	72, 2326, 2904, 3555
SlaI	CTCGAG	1 cut(s)	663
SmiMI	CAYNNNNRTG	2 cut(s)	2721, 3525
SmlI	CTYRAG	4 cut(s)	663, 2017, 3012, 3345
SmoI	CTYRAG	4 cut(s)	663, 2017, 3012, 3345
SphI	GCATGC	1 cut(s)	1109
SseBI	AGGCCT	3 cut(s)	422, 1313, 3533
SstI	GAGCTC	2 cut(s)	234, 1657
StuI	AGGCCT	3 cut(s)	422, 1313, 3533
StyD4I	CCNGG	8 cut(s)	47, 74, 201, 1800, 2382, 2419, 2500, 3523
StyI	CCWWGG	2 cut(s)	423, 1794
TaaI	ACNGT	9 cut(s)	1377, 1512, 2258, 2809, 2827, 2888, 3054, 3062, 3135
TaiI	ACGT	3 cut(s)	302, 2791, 3469
TaqII	GACCGA	1 cut(s)	2528
TatI	WGTACW	2 cut(s)	1554, 3450
TauI	GCSGC	4 cut(s)	13, 194, 1817, 1933
TseFI	GTSAC	4 cut(s)	185, 1231, 1506, 2261
TseI	GCWGC	8 cut(s)	13, 365, 1603, 2122, 2387, 2390, 3107, 3263
Tsp45I	GTSAC	4 cut(s)	185, 1231, 1506, 2261
TspGWI	ACGGA	4 cut(s)	467, 1471, 3001, 3251
Tth111I	GACNNNGTC	3 cut(s)	2515, 3062, 3197
Van91I	CCANNNNNTGG	1 cut(s)	2447
Vha464I	CTTAAG	1 cut(s)	2017
VneI	GTGCAC	1 cut(s)	2473
VpaK11BI	GGWCC	4 cut(s)	72, 2326, 2904, 3555
XapI	RAATTY	5 cut(s)	91, 409, 724, 1886, 3373
XbaI	TCTAGA	1 cut(s)	454
XceI	RCATGY	3 cut(s)	1109, 1561, 2597
XhoI	CTCGAG	1 cut(s)	663
XmiI	GTMKAC	2 cut(s)	1768, 2930
XmnI	GAANNNNTTC	3 cut(s)	1854, 1878, 3099
ZraI	GACGTC	1 cut(s)	300

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.