pycom111g04250

Gibberellin-regulated protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
SuperScaffold_111
OG0016513
Physical Location & Seq
Forward (+)
2588281 .. 2589399
1119 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 432 bp
ATGCTCATTGATTTTCTAACTCCCCCTTTCTTCTCTTCCTGTTCACATCTCCCTCCTCTTGCCCCTGGGGTTAGTTTCGCCATTAGGAGGGACTTGTCTGTAACAATGGCCATGGCTAAGTTCTTTGCTGCCTTGTTCTTGGCTCTCCTTGCCATCTCCATGCTTCAAACCATGGTTATGGCAGATCATGGGCATGGAGGTCATCACAAGGGCAATAATGCATATGGACCTGGGAGTCTCAAGAGCAGCCAATGCCCGTCGCAATGCACGAGGAGGTGCAGCCAGACGCAGTACCACAAGCCCTGCATGTTCTTCTGTCAGAAATGCTGCAAGAAGTGCCTGTGTGTACCCCCTGGATTTTACGGGAACAAGGCTGTGTGTCCTTGCTACAACAACTGGAAGACCCAGCAAGGAGGACCCAAGTGCCCTTGA

Protein Analysis

144

Amino Acids

15.69

Weight (kDa)

9.21

Isoelectric Point (pI)

51.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GASA PF02704 84 - 143 1e-22 Gibberellin regulated protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0016513)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G15230 AT5G15230
fragaria_vesca FvH4_6g48590
malus_domestica MD09G1051300.v1.1 MD17G1041500.v1.1
prunus_persica Prupe.3G267600_v2.0.a1
pyrus_communis pycom111g04250 pycom17g04610
rosa_chinensis RchiOBHm_Chr2g0168411
rosa_laevigata RLG00000021780
rosa_multiflora Rmu_sc0002789.1_g000002 Rmu_sc0012607.1_g000003
rosa_rugosa Rorug02G0533800
rosa_wichuraiana Rw2G050040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 234
AcoI YGGCCR 1 cut(s) 108
AfaI GTAC 2 cut(s) 293, 348
AfiI CCNNNNNNNGG 1 cut(s) 87
AgsI TTSAA 1 cut(s) 167
AjnI CCWGG 3 cut(s) 64, 229, 352
Alw26I GTCTC 1 cut(s) 242
AoxI GGCC 1 cut(s) 108
ApeKI GCWGC 4 cut(s) 128, 246, 279, 327
AspS9I GGNCC 2 cut(s) 227, 416
AvaII GGWCC 2 cut(s) 227, 416
BaeGI GKGCMC 1 cut(s) 428
BalI TGGCCA 1 cut(s) 110
BauI CACGAG 1 cut(s) 268
BbsI GAAGAC 1 cut(s) 407
BbvI GCAGC 4 cut(s) 115, 258, 291, 314
BccI CCATC 1 cut(s) 161
BciT130I CCWGG 3 cut(s) 66, 231, 354
BcoDI GTCTC 1 cut(s) 242
BisI GCNGC 4 cut(s) 129, 247, 280, 328
BlsI GCNGC 4 cut(s) 130, 248, 281, 329
Bme1390I CCNGG 3 cut(s) 66, 231, 354
Bme18I GGWCC 2 cut(s) 227, 416
BmgT120I GGNCC 2 cut(s) 227, 416
BmiI GGNNCC 1 cut(s) 418
BmrFI CCNGG 3 cut(s) 66, 231, 354
BpiI GAAGAC 1 cut(s) 407
BpuEI CTTGAG 1 cut(s) 224
BsaJI CCNNGG 6 cut(s) 64, 65, 111, 171, 230, 352
Bsc4I CCNNNNNNNGG 1 cut(s) 87
Bse1I ACTGG 1 cut(s) 401
Bse3DI GCAATG 1 cut(s) 269
BseBI CCWGG 3 cut(s) 66, 231, 354
BseDI CCNNGG 6 cut(s) 64, 65, 111, 171, 230, 352
BseLI CCNNNNNNNGG 1 cut(s) 87
BseMI GCAATG 1 cut(s) 269
BseNI ACTGG 1 cut(s) 401
BseRI GAGGAG 2 cut(s) 45, 286
BseSI GKGCMC 1 cut(s) 428
BseXI GCAGC 4 cut(s) 115, 258, 291, 314
BseYI CCCAGC 1 cut(s) 405
BsgI GTGCAG 1 cut(s) 298
BshFI GGCC 1 cut(s) 110
BslFI GGGAC 1 cut(s) 104
BslI CCNNNNNNNGG 1 cut(s) 87
BsmAI GTCTC 1 cut(s) 242
BsmFI GGGAC 1 cut(s) 104
BsnI GGCC 1 cut(s) 110
Bsp1286I GDGCHC 1 cut(s) 428
Bsp143I GATC 1 cut(s) 184
Bsp19I CCATGG 2 cut(s) 111, 171
BspANI GGCC 1 cut(s) 110
BspLI GGNNCC 1 cut(s) 418
BsrDI GCAATG 1 cut(s) 269
BsrI ACTGG 1 cut(s) 401
BssECI CCNNGG 6 cut(s) 64, 65, 111, 171, 230, 352
BssMI GATC 1 cut(s) 184
BssSI CACGAG 1 cut(s) 268
BssT1I CCWWGG 2 cut(s) 111, 171
Bst2BI CACGAG 1 cut(s) 268
Bst2UI CCWGG 3 cut(s) 66, 231, 354
Bst6I CTCTTC 1 cut(s) 40
BstAPI GCANNNNNTGC 2 cut(s) 252, 336
BstDEI CTNAG 1 cut(s) 117
BstDSI CCRYGG 2 cut(s) 111, 171
BstKTI GATC 1 cut(s) 187
BstMAI GTCTC 1 cut(s) 242
BstMBI GATC 1 cut(s) 184
BstMWI GCNNNNNNNGC 3 cut(s) 149, 252, 336
BstNI CCWGG 3 cut(s) 66, 231, 354
BstNSI RCATGY 1 cut(s) 310
BstSCI CCNGG 3 cut(s) 64, 229, 352
BstSLI GKGCMC 1 cut(s) 428
BstV1I GCAGC 4 cut(s) 115, 258, 291, 314
BstV2I GAAGAC 1 cut(s) 407
BstXI CCANNNNNNTGG 1 cut(s) 178
BsuRI GGCC 1 cut(s) 110
BtgI CCRYGG 2 cut(s) 111, 171
Cfr13I GGNCC 2 cut(s) 227, 416
CseI GACGC 1 cut(s) 295
Csp6I GTAC 2 cut(s) 292, 347
CviAII CATG 6 cut(s) 112, 160, 172, 188, 194, 307
CviJI RGCY 7 cut(s) 110, 116, 143, 249, 282, 301, 374
CviKI_1 RGCY 7 cut(s) 110, 116, 143, 249, 282, 301, 374
CviQI GTAC 2 cut(s) 292, 347
DdeI CTNAG 1 cut(s) 117
DpnI GATC 1 cut(s) 186
DpnII GATC 1 cut(s) 184
DrdI GACNNNNNNGTC 1 cut(s) 234
DseDI GACNNNNNNGTC 1 cut(s) 234
EaeI YGGCCR 1 cut(s) 108
Eam1104I CTCTTC 1 cut(s) 40
EarI CTCTTC 1 cut(s) 40
Eco130I CCWWGG 2 cut(s) 111, 171
Eco47I GGWCC 2 cut(s) 227, 416
EcoO109I RGGNCCY 1 cut(s) 416
EcoRII CCWGG 3 cut(s) 64, 229, 352
EcoT14I CCWWGG 2 cut(s) 111, 171
EcoT22I ATGCAT 1 cut(s) 223
ErhI CCWWGG 2 cut(s) 111, 171
FaeI CATG 6 cut(s) 115, 163, 175, 191, 197, 310
FaiI YATR 9 cut(s) 113, 161, 173, 179, 189, 195, 223, 225, 308
FaqI GGGAC 1 cut(s) 104
FatI CATG 6 cut(s) 111, 159, 171, 187, 193, 306
FauNDI CATATG 1 cut(s) 223
Fnu4HI GCNGC 4 cut(s) 129, 247, 280, 328
Fsp4HI GCNGC 4 cut(s) 129, 247, 280, 328
GluI GCNGC 4 cut(s) 129, 247, 280, 328
GsaI CCCAGC 1 cut(s) 409
HaeIII GGCC 1 cut(s) 110
HgaI GACGC 1 cut(s) 295
Hin1II CATG 6 cut(s) 115, 163, 175, 191, 197, 310
HinfI GANTC 1 cut(s) 235
Hpy166II GTNNAC 2 cut(s) 44, 347
Hpy188I TCNGA 1 cut(s) 321
Hpy188III TCNNGA 1 cut(s) 241
Hpy8I GTNNAC 2 cut(s) 44, 347
Hpy99I CGWCG 1 cut(s) 262
HpyCH4V TGCA 5 cut(s) 221, 267, 279, 306, 330
HpyF10VI GCNNNNNNNGC 3 cut(s) 149, 252, 336
HpyF3I CTNAG 1 cut(s) 117
Hsp92II CATG 6 cut(s) 115, 163, 175, 191, 197, 310
Kzo9I GATC 1 cut(s) 184
Lsp1109I GCAGC 4 cut(s) 115, 258, 291, 314
MaeIII GTNAC 1 cut(s) 100
MalI GATC 1 cut(s) 186
MboI GATC 1 cut(s) 184
MboII GAAGA 4 cut(s) 22, 27, 304, 412
MhlI GDGCHC 1 cut(s) 428
MlsI TGGCCA 1 cut(s) 110
MluNI TGGCCA 1 cut(s) 110
MlyI GAGTC 1 cut(s) 244
MnlI CCTC 7 cut(s) 63, 66, 81, 191, 264, 267, 407
Mox20I TGGCCA 1 cut(s) 110
Mph1103I ATGCAT 1 cut(s) 223
MscI TGGCCA 1 cut(s) 110
MslI CAYNNNNRTG 3 cut(s) 158, 176, 192
Msp20I TGGCCA 1 cut(s) 110
MspR9I CCNGG 3 cut(s) 66, 231, 354
MvaI CCWGG 3 cut(s) 66, 231, 354
MwoI GCNNNNNNNGC 3 cut(s) 149, 252, 336
NcoI CCATGG 2 cut(s) 111, 171
NdeI CATATG 1 cut(s) 223
NdeII GATC 1 cut(s) 184
NlaIII CATG 6 cut(s) 115, 163, 175, 191, 197, 310
NlaIV GGNNCC 1 cut(s) 418
NsiI ATGCAT 1 cut(s) 223
NspI RCATGY 1 cut(s) 310
PasI CCCWGGG 1 cut(s) 65
PcsI WCGNNNNNNNCGW 1 cut(s) 266
PkrI GCNGC 4 cut(s) 130, 248, 281, 329
PleI GAGTC 1 cut(s) 243
PpsI GAGTC 1 cut(s) 243
PpuMI RGGWCCY 1 cut(s) 416
Psp5II RGGWCCY 1 cut(s) 416
Psp6I CCWGG 3 cut(s) 64, 229, 352
PspFI CCCAGC 1 cut(s) 405
PspGI CCWGG 3 cut(s) 64, 229, 352
PspN4I GGNNCC 1 cut(s) 418
PspPI GGNCC 2 cut(s) 227, 416
PspPPI RGGWCCY 1 cut(s) 416
RsaI GTAC 2 cut(s) 293, 348
RsaNI GTAC 2 cut(s) 292, 347
RseI CAYNNNNRTG 3 cut(s) 158, 176, 192
SatI GCNGC 4 cut(s) 129, 247, 280, 328
Sau3AI GATC 1 cut(s) 184
Sau96I GGNCC 2 cut(s) 227, 416
SchI GAGTC 1 cut(s) 244
ScrFI CCNGG 3 cut(s) 66, 231, 354
SduI GDGCHC 1 cut(s) 428
SetI ASST 3 cut(s) 202, 232, 278
SinI GGWCC 2 cut(s) 227, 416
SmiMI CAYNNNNRTG 3 cut(s) 158, 176, 192
SmlI CTYRAG 1 cut(s) 239
SmoI CTYRAG 1 cut(s) 239
StyD4I CCNGG 3 cut(s) 64, 229, 352
StyI CCWWGG 2 cut(s) 111, 171
TseI GCWGC 4 cut(s) 128, 246, 279, 327
VpaK11BI GGWCC 2 cut(s) 227, 416
XceI RCATGY 1 cut(s) 310
Zsp2I ATGCAT 1 cut(s) 223
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.