pycom11g03490

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
OG0017556
Physical Location & Seq
Reverse (-)
2682825 .. 2683037
213 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 213 bp
ATGTGCTGTCCGAGTAGGGTTTGCATGCTGTGTACCTGTTTGATTCTGGTGGTCGTTCTGGTGGGTCTGCTATTCGGGTTCGGAGTCTTCAAGAACGGATTCCACAAGCTGAAAGATACTGTGAATATCTGTGACCCGAATGTTCCCGGGTCTTACTGCGGGTCCCAATCGGGTAGGCCCTTCTTGGGTTATGCTGCGCCCCCACCTTTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

71

Amino Acids

7.5

Weight (kDa)

8.56

Isoelectric Point (pI)

65.72

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0017556)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G13275
malus_domestica MD03G1039700.v1.1 MD11G1040400.v1.1
prunus_persica Prupe.6G032000_v2.0.a1
pyrus_communis pycom03g03060 pycom11g03490
rosa_chinensis RchiOBHm_Chr5g0075191
rosa_roxburghii Rroxscaffold_1G00006410 Rroxscaffold_1G00044420
rosa_rugosa Rorug05G0437300
rosa_wichuraiana Rw5G022900 Rw5G045860

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 159
AfaI GTAC 1 cut(s) 34
AfiI CCNNNNNNNGG 1 cut(s) 185
AgsI TTSAA 1 cut(s) 91
AluBI AGCT 1 cut(s) 109
AluI AGCT 1 cut(s) 109
Ama87I CYCGRG 1 cut(s) 146
AoxI GGCC 1 cut(s) 176
ApeKI GCWGC 1 cut(s) 194
Asp700I GAANNNNTTC 1 cut(s) 98
AspLEI GCGC 1 cut(s) 199
AspS9I GGNCC 2 cut(s) 162, 177
AsuC2I CCSGG 2 cut(s) 147, 148
AvaI CYCGRG 1 cut(s) 146
AvaII GGWCC 1 cut(s) 162
BbsI GAAGAC 1 cut(s) 79
BbvI GCAGC 1 cut(s) 181
BcnI CCSGG 2 cut(s) 147, 148
BfaI CTAG 1 cut(s) 211
BisI GCNGC 1 cut(s) 195
BlsI GCNGC 1 cut(s) 196
Bme1390I CCNGG 2 cut(s) 147, 148
Bme18I GGWCC 1 cut(s) 162
BmeT110I CYCGRG 1 cut(s) 146
BmgT120I GGNCC 2 cut(s) 162, 177
BmiI GGNNCC 2 cut(s) 163, 164
BmrFI CCNGG 2 cut(s) 147, 148
BpiI GAAGAC 1 cut(s) 79
BpuMI CCSGG 2 cut(s) 147, 148
BsaJI CCNNGG 1 cut(s) 146
Bsc4I CCNNNNNNNGG 1 cut(s) 185
BseDI CCNNGG 1 cut(s) 146
BseLI CCNNNNNNNGG 1 cut(s) 185
BseXI GCAGC 1 cut(s) 181
BshFI GGCC 1 cut(s) 178
BsiHKCI CYCGRG 1 cut(s) 146
BsiSI CCGG 1 cut(s) 147
BslFI GGGAC 1 cut(s) 148
BslI CCNNNNNNNGG 1 cut(s) 185
BsmFI GGGAC 1 cut(s) 148
BsnI GGCC 1 cut(s) 178
BsoBI CYCGRG 1 cut(s) 146
BspACI CCGC 1 cut(s) 159
BspANI GGCC 1 cut(s) 178
BspLI GGNNCC 2 cut(s) 163, 164
BssECI CCNNGG 1 cut(s) 146
Bst4CI ACNGT 1 cut(s) 121
BstC8I GCNNGC 1 cut(s) 26
BstHHI GCGC 1 cut(s) 199
BstNSI RCATGY 1 cut(s) 28
BstSCI CCNGG 2 cut(s) 145, 146
BstV1I GCAGC 1 cut(s) 181
BstV2I GAAGAC 1 cut(s) 79
BsuRI GGCC 1 cut(s) 178
Cac8I GCNNGC 1 cut(s) 26
CfoI GCGC 1 cut(s) 199
Cfr13I GGNCC 2 cut(s) 162, 177
Cfr9I CCCGGG 1 cut(s) 146
Csp6I GTAC 1 cut(s) 33
CviAII CATG 1 cut(s) 25
CviJI RGCY 2 cut(s) 109, 178
CviKI_1 RGCY 2 cut(s) 109, 178
CviQI GTAC 1 cut(s) 33
Eco47I GGWCC 1 cut(s) 162
Eco88I CYCGRG 1 cut(s) 146
EcoO109I RGGNCCY 2 cut(s) 162, 177
FaeI CATG 1 cut(s) 28
FaiI YATR 2 cut(s) 26, 192
FaqI GGGAC 1 cut(s) 148
FatI CATG 1 cut(s) 24
FauI CCCGC 1 cut(s) 152
Fnu4HI GCNGC 1 cut(s) 195
Fsp4HI GCNGC 1 cut(s) 195
FspBI CTAG 1 cut(s) 211
GlaI GCGC 1 cut(s) 198
GluI GCNGC 1 cut(s) 195
HaeIII GGCC 1 cut(s) 178
HapII CCGG 1 cut(s) 147
HhaI GCGC 1 cut(s) 199
Hin1II CATG 1 cut(s) 28
Hin6I GCGC 1 cut(s) 197
HinP1I GCGC 1 cut(s) 197
HinfI GANTC 3 cut(s) 43, 84, 99
HpaII CCGG 1 cut(s) 147
Hpy166II GTNNAC 1 cut(s) 33
Hpy188I TCNGA 2 cut(s) 12, 83
Hpy188III TCNNGA 1 cut(s) 91
Hpy8I GTNNAC 1 cut(s) 33
HpyAV CCTTC 1 cut(s) 190
HpyCH4III ACNGT 1 cut(s) 121
HpyCH4V TGCA 1 cut(s) 24
Hsp92II CATG 1 cut(s) 28
HspAI GCGC 1 cut(s) 197
KflI GGGWCCC 1 cut(s) 162
LpnPI CCDG 4 cut(s) 32, 44, 49, 160
Lsp1109I GCAGC 1 cut(s) 181
MaeI CTAG 1 cut(s) 211
MaeIII GTNAC 1 cut(s) 131
MboII GAAGA 1 cut(s) 79
MlyI GAGTC 1 cut(s) 93
MroXI GAANNNNTTC 1 cut(s) 98
MspI CCGG 1 cut(s) 147
MspR9I CCNGG 2 cut(s) 147, 148
NciI CCSGG 2 cut(s) 147, 148
NlaIII CATG 1 cut(s) 28
NlaIV GGNNCC 2 cut(s) 163, 164
NmuCI GTSAC 1 cut(s) 131
NspI RCATGY 1 cut(s) 28
PaeI GCATGC 1 cut(s) 28
PdmI GAANNNNTTC 1 cut(s) 98
PfeI GAWTC 2 cut(s) 43, 99
PkrI GCNGC 1 cut(s) 196
PleI GAGTC 1 cut(s) 92
PpsI GAGTC 1 cut(s) 92
PpuMI RGGWCCY 1 cut(s) 162
Psp5II RGGWCCY 1 cut(s) 162
PspN4I GGNNCC 2 cut(s) 163, 164
PspPI GGNCC 2 cut(s) 162, 177
PspPPI RGGWCCY 1 cut(s) 162
RsaI GTAC 1 cut(s) 34
RsaNI GTAC 1 cut(s) 33
SatI GCNGC 1 cut(s) 195
Sau96I GGNCC 2 cut(s) 162, 177
SchI GAGTC 1 cut(s) 93
ScrFI CCNGG 2 cut(s) 147, 148
SetI ASST 3 cut(s) 38, 111, 208
SinI GGWCC 1 cut(s) 162
SmaI CCCGGG 1 cut(s) 148
SphI GCATGC 1 cut(s) 28
SsiI CCGC 1 cut(s) 159
SspMI CTAG 1 cut(s) 211
StyD4I CCNGG 2 cut(s) 145, 146
TaaI ACNGT 1 cut(s) 121
TfiI GAWTC 2 cut(s) 43, 99
TseFI GTSAC 1 cut(s) 131
TseI GCWGC 1 cut(s) 194
Tsp45I GTSAC 1 cut(s) 131
TspGWI ACGGA 1 cut(s) 111
TspMI CCCGGG 1 cut(s) 146
VpaK11BI GGWCC 1 cut(s) 162
XceI RCATGY 1 cut(s) 28
XmaI CCCGGG 1 cut(s) 146
XmnI GAANNNNTTC 1 cut(s) 98
XspI CTAG 1 cut(s) 211
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.