pycom11g08990

Outer envelope pore protein 16

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
OG0012343
Physical Location & Seq
Forward (+)
7145584 .. 7147488
1905 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 654 bp
ATGTCACTTCCACCGGCACCGCCTGATGCAATTGATGCTGCACTGCATGGCATCTTTCGATGGCATTCTCGTAAATGTTTCATCACTGATAAATATCGTATCACAAAACACCCCCACCAATTTTGTCATCATAGTGTTCGTCTATCACAGAGGGGAGGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGAGACAGAGAAAGAAGAAGAAGATGCCGGGAAGCAGTTTCTCAGGGGCGCTTACAGGGCCGCAAGTCGACGTGATCATCGACTTGGGAAACCCATTGCTCAACCACACCGTCGATGGCTTCTTGAAGATCGGAACCGTTGCTGCTACCAGAGCTGTTGCAGAGGATGCTTTCTCTGCGGCCAAGAAAGGGAGCATTTCGACTAGCGACTTTAAGCACACTTTGAAGAAGATGTGTAAAGAAGGTGCATATTGGGGTACTGTAGCTGGAGTGTACGTGGGAGCAGAGTATGGTATCGAGAGGGTCAGTGGACACAGAGACTGGAAGAATGCCATGCTCGGGGGTGCATTGACAGGGGCTCTAGTATCTGCAGCCAGCAAAGAGAACAAGGATAAAGTTCTGGTGGATGCAATTACAGGAGGTGCCATTGCGACCGCTGTGGAATTCATCAACTATCTCACCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0001101 GO:0003333 GO:0003674 GO:0005215 GO:0005342 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005744 GO:0005773 GO:0006605 GO:0006626 GO:0006810 GO:0006811 GO:0006820 GO:0006839 GO:0006865 GO:0006886 GO:0006950 GO:0006996 GO:0007005 GO:0008104 GO:0008150 GO:0008509 GO:0008514 GO:0009266 GO:0009409 GO:0009507 GO:0009513 GO:0009526 GO:0009527 GO:0009536 GO:0009611 GO:0009628 GO:0009707 GO:0009719 GO:0009725 GO:0009743 GO:0009744 GO:0009746 GO:0009749 GO:0009753 GO:0009941 GO:0009987 GO:0010033 GO:0015031 GO:0015075 GO:0015171 GO:0015318 GO:0015711 GO:0015833 GO:0015849 GO:0016020 GO:0016021 GO:0016043 GO:0017038 GO:0019866 GO:0019867 GO:0019904 GO:0022857 GO:0030150 GO:0031090 GO:0031224 GO:0031300 GO:0031301 GO:0031304 GO:0031305 GO:0031966 GO:0031967 GO:0031968 GO:0031969 GO:0031975 GO:0032592 GO:0032991 GO:0033036 GO:0033365 GO:0034220 GO:0034284 GO:0034285 GO:0034425 GO:0034426 GO:0034613 GO:0042170 GO:0042221 GO:0042802 GO:0042803 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0044743 GO:0045036 GO:0045037 GO:0045184 GO:0046907 GO:0046942 GO:0046943 GO:0046983 GO:0050896 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0065002 GO:0070585 GO:0070727 GO:0071702 GO:0071705 GO:0071806 GO:0071840 GO:0072594 GO:0072596 GO:0072598 GO:0072655 GO:0098573 GO:0098588 GO:0098656 GO:0098796 GO:0098798 GO:0098800 GO:0098805 GO:1901700 GO:1903825 GO:1905039 GO:1990542
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Tim17

Protein Analysis

218

Amino Acids

23.76

Weight (kDa)

9.76

Isoelectric Point (pI)

22.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Tim17 PF02466 107 - 207 1.7e-10 Tim17/Tim22/Tim23/Pmp24 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0012343)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G28900
fragaria_vesca FvH4_3g36080
malus_domestica MD03G1093500.v1.1 MD11G1108300.v1.1 MD11G1108500.v1.1 MD11G1108700.v1.1
prunus_persica Prupe.6G077600_v2.0.a1
pyrus_communis pycom03g07510 pycom11g08950 pycom11g08990
rosa_chinensis RchiOBHm_Chr5g0064511
rosa_laevigata RLG00000035730
rosa_multiflora Rmu_sc0003352.1_g000002
rosa_roxburghii Rroxscaffold_1G00016510
rosa_rugosa Rorug05G0365700 Rorug05G0365800
rosa_samantha Rh5AG423700 Rh5DG452400
rosa_wichuraiana Rw5G039830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 16, 611
AccI GTMKAC 1 cut(s) 258
AciI CCGC 4 cut(s) 20, 251, 368, 624
AcoI YGGCCR 1 cut(s) 369
AcsI RAATTY 1 cut(s) 632
AfaI GTAC 2 cut(s) 448, 464
AfiI CCNNNNNNNGG 2 cut(s) 378, 528
AgsI TTSAA 2 cut(s) 316, 415
AjiI CACGTC 1 cut(s) 262
AluBI AGCT 2 cut(s) 344, 455
AluI AGCT 2 cut(s) 344, 455
Alw26I GTCTC 2 cut(s) 187, 501
AlwNI CAGNNNCTG 1 cut(s) 510
Ama87I CYCGRG 1 cut(s) 527
AoxI GGCC 2 cut(s) 248, 369
ApeKI GCWGC 3 cut(s) 38, 332, 560
ApoI RAATTY 1 cut(s) 632
AspLEI GCGC 1 cut(s) 241
AspS9I GGNCC 1 cut(s) 248
AsuC2I CCSGG 1 cut(s) 219
AsuHPI GGTGA 1 cut(s) 640
AvaI CYCGRG 1 cut(s) 527
BanI GGYRCC 2 cut(s) 16, 611
BanII GRGCYC 1 cut(s) 550
BbvI GCAGC 3 cut(s) 25, 319, 572
BccI CCATC 2 cut(s) 54, 299
BclI TGATCA 1 cut(s) 264
BcnI CCSGG 1 cut(s) 219
BcoDI GTCTC 2 cut(s) 187, 501
BfaI CTAG 2 cut(s) 393, 551
BfmI CTRYAG 2 cut(s) 450, 558
BfoI RGCGCY 1 cut(s) 242
BisI GCNGC 5 cut(s) 39, 251, 333, 369, 561
BlsI GCNGC 5 cut(s) 40, 252, 334, 370, 562
Bme1390I CCNGG 1 cut(s) 219
BmeT110I CYCGRG 1 cut(s) 527
BmgBI CACGTC 1 cut(s) 262
BmgT120I GGNCC 1 cut(s) 248
BmiI GGNNCC 3 cut(s) 18, 325, 613
BmrFI CCNGG 1 cut(s) 219
BmsI GCATC 6 cut(s) 16, 25, 60, 204, 346, 586
BpmI CTGGAG 1 cut(s) 477
BpuMI CCSGG 1 cut(s) 219
BsaAI YACGTR 1 cut(s) 466
BsaBI GATNNNNATC 1 cut(s) 93
BsaXI ACNNNNNCTCC 2 cut(s) 450, 480
Bsc4I CCNNNNNNNGG 2 cut(s) 378, 528
Bse118I RCCGGY 1 cut(s) 13
Bse1I ACTGG 1 cut(s) 515
Bse3DI GCAATG 2 cut(s) 284, 615
Bse8I GATNNNNATC 1 cut(s) 93
BseGI GGATG 2 cut(s) 361, 601
BseJI GATNNNNATC 1 cut(s) 93
BseLI CCNNNNNNNGG 2 cut(s) 378, 528
BseMI GCAATG 2 cut(s) 284, 615
BseMII CTCAG 1 cut(s) 246
BseNI ACTGG 1 cut(s) 515
BseRI GAGGAG 1 cut(s) 205
BseXI GCAGC 3 cut(s) 25, 319, 572
BsgI GTGCAG 1 cut(s) 24
Bsh1285I CGRYCG 1 cut(s) 624
BshFI GGCC 2 cut(s) 250, 371
BshNI GGYRCC 2 cut(s) 16, 611
BsiEI CGRYCG 1 cut(s) 624
BsiHKCI CYCGRG 1 cut(s) 527
BsiSI CCGG 2 cut(s) 14, 218
BslI CCNNNNNNNGG 2 cut(s) 378, 528
BsmAI GTCTC 2 cut(s) 187, 501
BsmI GAATGC 2 cut(s) 64, 523
BsnI GGCC 2 cut(s) 250, 371
BsoBI CYCGRG 1 cut(s) 527
Bsp1286I GDGCHC 1 cut(s) 550
Bsp143I GATC 2 cut(s) 264, 318
BspACI CCGC 4 cut(s) 20, 251, 368, 624
BspANI GGCC 2 cut(s) 250, 371
BspCNI CTCAG 1 cut(s) 245
BspLI GGNNCC 3 cut(s) 18, 325, 613
BspMAI CTGCAG 1 cut(s) 562
BspT107I GGYRCC 2 cut(s) 16, 611
BsrDI GCAATG 2 cut(s) 284, 615
BsrFI RCCGGY 1 cut(s) 13
BsrI ACTGG 1 cut(s) 515
BssAI RCCGGY 1 cut(s) 13
BssMI GATC 2 cut(s) 264, 318
Bst4CI ACNGT 3 cut(s) 301, 328, 451
BstAPI GCANNNNNTGC 2 cut(s) 35, 356
BstBAI YACGTR 1 cut(s) 466
BstC8I GCNNGC 1 cut(s) 565
BstDEI CTNAG 1 cut(s) 232
BstF5I GGATG 2 cut(s) 361, 601
BstH2I RGCGCY 1 cut(s) 242
BstHHI GCGC 1 cut(s) 241
BstKTI GATC 2 cut(s) 267, 321
BstMAI GTCTC 2 cut(s) 187, 501
BstMBI GATC 2 cut(s) 264, 318
BstMCI CGRYCG 1 cut(s) 624
BstMWI GCNNNNNNNGC 5 cut(s) 35, 247, 341, 356, 365
BstSCI CCNGG 1 cut(s) 217
BstSFI CTRYAG 2 cut(s) 450, 558
BstV1I GCAGC 3 cut(s) 25, 319, 572
BsuRI GGCC 2 cut(s) 250, 371
BtrI CACGTC 1 cut(s) 262
BtsCI GGATG 2 cut(s) 361, 601
BtsI GCAGTG 1 cut(s) 41
BtsIMutI CAGTG 3 cut(s) 41, 84, 502
Cac8I GCNNGC 1 cut(s) 565
CaiI CAGNNNCTG 1 cut(s) 510
CfoI GCGC 1 cut(s) 241
Cfr10I RCCGGY 1 cut(s) 13
Cfr13I GGNCC 1 cut(s) 248
Csp6I GTAC 2 cut(s) 447, 463
CspCI CAANNNNNGTGG 2 cut(s) 104, 139
CviAII CATG 2 cut(s) 47, 523
CviJI RGCY 7 cut(s) 250, 309, 344, 371, 455, 548, 563
CviKI_1 RGCY 7 cut(s) 250, 309, 344, 371, 455, 548, 563
CviQI GTAC 2 cut(s) 447, 463
DdeI CTNAG 1 cut(s) 232
DpnI GATC 2 cut(s) 266, 320
DpnII GATC 2 cut(s) 264, 318
EaeI YGGCCR 1 cut(s) 369
Eco24I GRGCYC 1 cut(s) 550
Eco88I CYCGRG 1 cut(s) 527
EcoRI GAATTC 1 cut(s) 632
EcoT38I GRGCYC 1 cut(s) 550
FaeI CATG 2 cut(s) 50, 526
FaiI YATR 5 cut(s) 48, 132, 439, 480, 524
FatI CATG 2 cut(s) 46, 522
FbaI TGATCA 1 cut(s) 264
FblI GTMKAC 1 cut(s) 258
Fnu4HI GCNGC 5 cut(s) 39, 251, 333, 369, 561
FokI GGATG 2 cut(s) 368, 608
FriOI GRGCYC 1 cut(s) 550
Fsp4HI GCNGC 5 cut(s) 39, 251, 333, 369, 561
FspBI CTAG 2 cut(s) 393, 551
GlaI GCGC 1 cut(s) 240
GluI GCNGC 5 cut(s) 39, 251, 333, 369, 561
GsuI CTGGAG 1 cut(s) 477
HaeII RGCGCY 1 cut(s) 242
HaeIII GGCC 2 cut(s) 250, 371
HapII CCGG 2 cut(s) 14, 218
HhaI GCGC 1 cut(s) 241
Hin1II CATG 2 cut(s) 50, 526
Hin6I GCGC 1 cut(s) 239
HinP1I GCGC 1 cut(s) 239
HincII GTYRAC 1 cut(s) 259
HindII GTYRAC 1 cut(s) 259
HpaII CCGG 2 cut(s) 14, 218
HphI GGTGA 1 cut(s) 640
Hpy166II GTNNAC 3 cut(s) 259, 463, 500
Hpy188I TCNGA 1 cut(s) 323
Hpy188III TCNNGA 2 cut(s) 313, 487
Hpy8I GTNNAC 3 cut(s) 259, 463, 500
Hpy99I CGWCG 2 cut(s) 263, 305
HpyAV CCTTC 1 cut(s) 425
HpyCH4III ACNGT 3 cut(s) 301, 328, 451
HpyCH4IV ACGT 2 cut(s) 261, 465
HpyCH4V TGCA 8 cut(s) 29, 41, 46, 350, 437, 536, 560, 599
HpyF10VI GCNNNNNNNGC 5 cut(s) 35, 247, 341, 356, 365
HpyF3I CTNAG 1 cut(s) 232
HpySE526I ACGT 2 cut(s) 261, 465
Hsp92II CATG 2 cut(s) 50, 526
HspAI GCGC 1 cut(s) 239
Ksp22I TGATCA 1 cut(s) 264
Kzo9I GATC 2 cut(s) 264, 318
LmnI GCTCC 2 cut(s) 381, 470
Lsp1109I GCAGC 3 cut(s) 25, 319, 572
LweI GCATC 6 cut(s) 16, 25, 60, 204, 346, 586
MaeI CTAG 2 cut(s) 393, 551
MaeII ACGT 2 cut(s) 261, 465
MaeIII GTNAC 1 cut(s) 3
MalI GATC 2 cut(s) 266, 320
MboI GATC 2 cut(s) 264, 318
MboII GAAGA 7 cut(s) 217, 220, 223, 328, 427, 430, 526
MfeI CAATTG 1 cut(s) 30
MhlI GDGCHC 1 cut(s) 550
MluCI AATT 4 cut(s) 30, 119, 600, 632
MnlI CCTC 6 cut(s) 144, 149, 183, 346, 483, 602
MseI TTAA 1 cut(s) 402
MslI CAYNNNNRTG 1 cut(s) 132
MspA1I CMGCKG 1 cut(s) 626
MspI CCGG 2 cut(s) 14, 218
MspR9I CCNGG 1 cut(s) 219
MunI CAATTG 1 cut(s) 30
Mva1269I GAATGC 2 cut(s) 64, 523
MwoI GCNNNNNNNGC 5 cut(s) 35, 247, 341, 356, 365
NciI CCSGG 1 cut(s) 219
NdeII GATC 2 cut(s) 264, 318
NlaIII CATG 2 cut(s) 50, 526
NlaIV GGNNCC 3 cut(s) 18, 325, 613
NmuCI GTSAC 1 cut(s) 3
PcsI WCGNNNNNNNCGW 1 cut(s) 267
PctI GAATGC 2 cut(s) 64, 523
PkrI GCNGC 5 cut(s) 40, 252, 334, 370, 562
Ppu21I YACGTR 1 cut(s) 466
PspN4I GGNNCC 3 cut(s) 18, 325, 613
PspPI GGNCC 1 cut(s) 248
PstI CTGCAG 1 cut(s) 562
PstNI CAGNNNCTG 1 cut(s) 510
RsaI GTAC 2 cut(s) 448, 464
RsaNI GTAC 2 cut(s) 447, 463
RseI CAYNNNNRTG 1 cut(s) 132
SalI GTCGAC 1 cut(s) 257
SaqAI TTAA 1 cut(s) 402
SatI GCNGC 5 cut(s) 39, 251, 333, 369, 561
Sau3AI GATC 2 cut(s) 264, 318
Sau96I GGNCC 1 cut(s) 248
ScrFI CCNGG 1 cut(s) 219
SduI GDGCHC 1 cut(s) 550
SetI ASST 7 cut(s) 264, 346, 436, 457, 468, 613, 653
SfaNI GCATC 6 cut(s) 16, 25, 60, 204, 346, 586
SfcI CTRYAG 2 cut(s) 450, 558
SmiMI CAYNNNNRTG 1 cut(s) 132
Sse9I AATT 4 cut(s) 30, 119, 600, 632
SsiI CCGC 4 cut(s) 20, 251, 368, 624
SspMI CTAG 2 cut(s) 393, 551
StyD4I CCNGG 1 cut(s) 217
TaaI ACNGT 3 cut(s) 301, 328, 451
TaiI ACGT 2 cut(s) 264, 468
TaqI TCGA 6 cut(s) 58, 258, 270, 303, 389, 486
TasI AATT 4 cut(s) 30, 119, 600, 632
TauI GCSGC 2 cut(s) 253, 371
Tru1I TTAA 1 cut(s) 402
Tru9I TTAA 1 cut(s) 402
TscAI CASTG 3 cut(s) 48, 91, 502
TseFI GTSAC 1 cut(s) 3
TseI GCWGC 3 cut(s) 38, 332, 560
Tsp45I GTSAC 1 cut(s) 3
TspDTI ATGAA 2 cut(s) 70, 625
TspRI CASTG 3 cut(s) 48, 91, 502
XapI RAATTY 1 cut(s) 632
XcmI CCANNNNNNNNNTGG 1 cut(s) 302
XmiI GTMKAC 1 cut(s) 258
XspI CTAG 2 cut(s) 393, 551
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.