Pentatricopeptide repeat-containing protein At1g07590
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G07590 |
| fragaria_vesca | FvH4_3g36060 FvH4_3g36060 |
| malus_domestica | MD11G1109000.v1.1 |
| prunus_persica | Prupe.6G077700_v2.0.a1 |
| pyrus_communis | pycom11g09010 |
| rosa_chinensis | RchiOBHm_Chr5g0064501 |
| rosa_laevigata | RLG00000035729 |
| rosa_multiflora | Rmu_sc0003352.1_g000001 Rmu_sc0018367.1_g000006 Rmu_sc0032871.1_g000002 |
| rosa_roxburghii | Rroxscaffold_1G00016520 |
| rosa_rugosa | Rorug05G0365500 Rorug05G0365600 |
| rosa_samantha | Rh5AG423600 Rh5BG439000 Rh5CG461700 Rh5DG452300 |
| rosa_wichuraiana | Rw5G039820 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 405 |
| AccB1I | GGYRCC | 1 cut(s) | 1197 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 829 |
| AccBSI | CCGCTC | 1 cut(s) | 538 |
| AccI | GTMKAC | 2 cut(s) | 756, 842 |
| AccII | CGCG | 3 cut(s) | 327, 454, 456 |
| AciI | CCGC | 4 cut(s) | 298, 536, 849, 1541 |
| AclI | AACGTT | 1 cut(s) | 905 |
| AcoI | YGGCCR | 1 cut(s) | 846 |
| AcsI | RAATTY | 4 cut(s) | 87, 104, 404, 1321 |
| AcuI | CTGAAG | 2 cut(s) | 873, 1080 |
| AfaI | GTAC | 2 cut(s) | 14, 1451 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 624, 829, 996, 1336 |
| AjiI | CACGTC | 1 cut(s) | 64 |
| AluBI | AGCT | 8 cut(s) | 205, 243, 310, 382, 815, 1058, 1268, 1424 |
| AluI | AGCT | 8 cut(s) | 205, 243, 310, 382, 815, 1058, 1268, 1424 |
| Alw26I | GTCTC | 1 cut(s) | 1334 |
| Ama87I | CYCGRG | 2 cut(s) | 140, 539 |
| AoxI | GGCC | 7 cut(s) | 362, 371, 568, 666, 846, 1147, 1532 |
| ApeKI | GCWGC | 2 cut(s) | 205, 1239 |
| ApoI | RAATTY | 4 cut(s) | 87, 104, 404, 1321 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 1333, 1365 |
| AspLEI | GCGC | 3 cut(s) | 329, 456, 1529 |
| AspS9I | GGNCC | 3 cut(s) | 363, 568, 666 |
| AsuHPI | GGTGA | 3 cut(s) | 263, 287, 361 |
| AsuII | TTCGAA | 1 cut(s) | 1579 |
| AvaI | CYCGRG | 2 cut(s) | 140, 539 |
| AxyI | CCTNAGG | 1 cut(s) | 302 |
| BanI | GGYRCC | 1 cut(s) | 1197 |
| BanII | GRGCYC | 1 cut(s) | 179 |
| BbsI | GAAGAC | 1 cut(s) | 274 |
| BbvI | GCAGC | 2 cut(s) | 192, 1226 |
| BccI | CCATC | 4 cut(s) | 241, 248, 579, 584 |
| BceAI | ACGGC | 1 cut(s) | 861 |
| BclI | TGATCA | 1 cut(s) | 351 |
| BcoDI | GTCTC | 1 cut(s) | 1334 |
| BfaI | CTAG | 1 cut(s) | 383 |
| BfmI | CTRYAG | 2 cut(s) | 367, 1549 |
| BfuAI | ACCTGC | 1 cut(s) | 405 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 370 |
| BisI | GCNGC | 3 cut(s) | 206, 849, 1240 |
| BlsI | GCNGC | 3 cut(s) | 207, 850, 1241 |
| BmeT110I | CYCGRG | 2 cut(s) | 140, 539 |
| BmgBI | CACGTC | 1 cut(s) | 64 |
| BmgT120I | GGNCC | 3 cut(s) | 363, 568, 666 |
| BmiI | GGNNCC | 1 cut(s) | 1199 |
| BmsI | GCATC | 5 cut(s) | 816, 1086, 1172, 1234, 1528 |
| BpiI | GAAGAC | 1 cut(s) | 274 |
| Bpu14I | TTCGAA | 1 cut(s) | 1579 |
| BpuEI | CTTGAG | 3 cut(s) | 296, 353, 417 |
| Bsa29I | ATCGAT | 1 cut(s) | 1155 |
| BsaI | GGTCTC | 1 cut(s) | 1334 |
| BsaJI | CCNNGG | 3 cut(s) | 870, 1167, 1331 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 207, 237 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 624, 829, 996, 1336 |
| Bse1I | ACTGG | 2 cut(s) | 221, 902 |
| Bse21I | CCTNAGG | 1 cut(s) | 302 |
| BseCI | ATCGAT | 1 cut(s) | 1155 |
| BseDI | CCNNGG | 3 cut(s) | 870, 1167, 1331 |
| BseGI | GGATG | 7 cut(s) | 252, 571, 1101, 1163, 1296, 1518, 1543 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 624, 829, 996, 1336 |
| BseMII | CTCAG | 3 cut(s) | 95, 316, 1098 |
| BseNI | ACTGG | 2 cut(s) | 221, 902 |
| BseX3I | CGGCCG | 1 cut(s) | 846 |
| BseXI | GCAGC | 2 cut(s) | 192, 1226 |
| BsgI | GTGCAG | 1 cut(s) | 100 |
| Bsh1236I | CGCG | 3 cut(s) | 327, 454, 456 |
| Bsh1285I | CGRYCG | 1 cut(s) | 849 |
| BshFI | GGCC | 7 cut(s) | 364, 373, 570, 668, 848, 1149, 1534 |
| BshNI | GGYRCC | 1 cut(s) | 1197 |
| BshVI | ATCGAT | 1 cut(s) | 1155 |
| BsiEI | CGRYCG | 1 cut(s) | 849 |
| BsiHKCI | CYCGRG | 2 cut(s) | 140, 539 |
| BsiSI | CCGG | 1 cut(s) | 1535 |
| BslFI | GGGAC | 1 cut(s) | 50 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 624, 829, 996, 1336 |
| BsmAI | GTCTC | 1 cut(s) | 1334 |
| BsmFI | GGGAC | 1 cut(s) | 50 |
| BsmI | GAATGC | 1 cut(s) | 1396 |
| BsnI | GGCC | 7 cut(s) | 364, 373, 570, 668, 848, 1149, 1534 |
| Bso31I | GGTCTC | 1 cut(s) | 1334 |
| BsoBI | CYCGRG | 2 cut(s) | 140, 539 |
| Bsp119I | TTCGAA | 1 cut(s) | 1579 |
| Bsp1286I | GDGCHC | 1 cut(s) | 179 |
| Bsp1407I | TGTACA | 1 cut(s) | 1449 |
| Bsp143I | GATC | 2 cut(s) | 351, 478 |
| BspACI | CCGC | 4 cut(s) | 298, 536, 849, 1541 |
| BspANI | GGCC | 7 cut(s) | 364, 373, 570, 668, 848, 1149, 1534 |
| BspCNI | CTCAG | 3 cut(s) | 94, 315, 1099 |
| BspDI | ATCGAT | 1 cut(s) | 1155 |
| BspFNI | CGCG | 3 cut(s) | 327, 454, 456 |
| BspHI | TCATGA | 1 cut(s) | 708 |
| BspLI | GGNNCC | 1 cut(s) | 1199 |
| BspMI | ACCTGC | 1 cut(s) | 405 |
| BspT104I | TTCGAA | 1 cut(s) | 1579 |
| BspT107I | GGYRCC | 1 cut(s) | 1197 |
| BspTNI | GGTCTC | 1 cut(s) | 1334 |
| BsrBI | CCGCTC | 1 cut(s) | 538 |
| BsrGI | TGTACA | 1 cut(s) | 1449 |
| BsrI | ACTGG | 2 cut(s) | 221, 902 |
| BssECI | CCNNGG | 3 cut(s) | 870, 1167, 1331 |
| BssMI | GATC | 2 cut(s) | 351, 478 |
| BssNAI | GTATAC | 2 cut(s) | 757, 843 |
| BssT1I | CCWWGG | 2 cut(s) | 870, 1167 |
| Bst1107I | GTATAC | 2 cut(s) | 757, 843 |
| Bst4CI | ACNGT | 2 cut(s) | 58, 1192 |
| Bst6I | CTCTTC | 2 cut(s) | 625, 1502 |
| BstAUI | TGTACA | 1 cut(s) | 1449 |
| BstBI | TTCGAA | 1 cut(s) | 1579 |
| BstC8I | GCNNGC | 2 cut(s) | 508, 774 |
| BstDEI | CTNAG | 4 cut(s) | 81, 302, 1107, 1425 |
| BstDSI | CCRYGG | 1 cut(s) | 1331 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 622 |
| BstF5I | GGATG | 7 cut(s) | 252, 571, 1101, 1163, 1296, 1518, 1543 |
| BstFNI | CGCG | 3 cut(s) | 327, 454, 456 |
| BstHHI | GCGC | 3 cut(s) | 329, 456, 1529 |
| BstKTI | GATC | 2 cut(s) | 354, 481 |
| BstMAI | GTCTC | 1 cut(s) | 1334 |
| BstMBI | GATC | 2 cut(s) | 351, 478 |
| BstMCI | CGRYCG | 1 cut(s) | 849 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 370, 379, 854, 1430 |
| BstNSI | RCATGY | 1 cut(s) | 689 |
| BstSFI | CTRYAG | 2 cut(s) | 367, 1549 |
| BstUI | CGCG | 3 cut(s) | 327, 454, 456 |
| BstV1I | GCAGC | 2 cut(s) | 192, 1226 |
| BstV2I | GAAGAC | 1 cut(s) | 274 |
| BstZ17I | GTATAC | 2 cut(s) | 757, 843 |
| BstZI | CGGCCG | 1 cut(s) | 846 |
| Bsu15I | ATCGAT | 1 cut(s) | 1155 |
| Bsu36I | CCTNAGG | 1 cut(s) | 302 |
| BsuRI | GGCC | 7 cut(s) | 364, 373, 570, 668, 848, 1149, 1534 |
| BsuTUI | ATCGAT | 1 cut(s) | 1155 |
| BtgI | CCRYGG | 1 cut(s) | 1331 |
| BtgZI | GCGATG | 2 cut(s) | 11, 1395 |
| BtrI | CACGTC | 1 cut(s) | 64 |
| BtsCI | GGATG | 7 cut(s) | 252, 571, 1101, 1163, 1296, 1518, 1543 |
| BtsI | GCAGTG | 1 cut(s) | 834 |
| BtsIMutI | CAGTG | 2 cut(s) | 834, 1104 |
| BveI | ACCTGC | 1 cut(s) | 405 |
| Cac8I | GCNNGC | 2 cut(s) | 508, 774 |
| CciI | TCATGA | 1 cut(s) | 708 |
| CfoI | GCGC | 3 cut(s) | 329, 456, 1529 |
| Cfr13I | GGNCC | 3 cut(s) | 363, 568, 666 |
| ClaI | ATCGAT | 1 cut(s) | 1155 |
| Csp6I | GTAC | 2 cut(s) | 13, 1450 |
| CviAII | CATG | 7 cut(s) | 422, 686, 709, 824, 992, 1123, 1145 |
| CviQI | GTAC | 2 cut(s) | 13, 1450 |
| DdeI | CTNAG | 4 cut(s) | 81, 302, 1107, 1425 |
| DpnI | GATC | 2 cut(s) | 353, 480 |
| DpnII | GATC | 2 cut(s) | 351, 478 |
| EaeI | YGGCCR | 1 cut(s) | 846 |
| EagI | CGGCCG | 1 cut(s) | 846 |
| Eam1104I | CTCTTC | 2 cut(s) | 625, 1502 |
| EarI | CTCTTC | 2 cut(s) | 625, 1502 |
| EclXI | CGGCCG | 1 cut(s) | 846 |
| Eco130I | CCWWGG | 2 cut(s) | 870, 1167 |
| Eco24I | GRGCYC | 1 cut(s) | 179 |
| Eco31I | GGTCTC | 1 cut(s) | 1334 |
| Eco32I | GATATC | 2 cut(s) | 429, 1128 |
| Eco52I | CGGCCG | 1 cut(s) | 846 |
| Eco57I | CTGAAG | 2 cut(s) | 873, 1080 |
| Eco81I | CCTNAGG | 1 cut(s) | 302 |
| Eco88I | CYCGRG | 2 cut(s) | 140, 539 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 622 |
| EcoO109I | RGGNCCY | 1 cut(s) | 363 |
| EcoRI | GAATTC | 1 cut(s) | 1321 |
| EcoRV | GATATC | 2 cut(s) | 429, 1128 |
| EcoT14I | CCWWGG | 2 cut(s) | 870, 1167 |
| EcoT38I | GRGCYC | 1 cut(s) | 179 |
| ErhI | CCWWGG | 2 cut(s) | 870, 1167 |
| FaeI | CATG | 7 cut(s) | 425, 689, 712, 827, 995, 1126, 1148 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1426, 1458 |
| FaqI | GGGAC | 1 cut(s) | 50 |
| FatI | CATG | 7 cut(s) | 421, 685, 708, 823, 991, 1122, 1144 |
| FbaI | TGATCA | 1 cut(s) | 351 |
| FblI | GTMKAC | 2 cut(s) | 756, 842 |
| Fnu4HI | GCNGC | 3 cut(s) | 206, 849, 1240 |
| FokI | GGATG | 7 cut(s) | 259, 558, 1108, 1150, 1303, 1525, 1550 |
| FriOI | GRGCYC | 1 cut(s) | 179 |
| Fsp4HI | GCNGC | 3 cut(s) | 206, 849, 1240 |
| FspBI | CTAG | 1 cut(s) | 383 |
| GlaI | GCGC | 3 cut(s) | 328, 455, 1528 |
| GluI | GCNGC | 3 cut(s) | 206, 849, 1240 |
| HaeIII | GGCC | 7 cut(s) | 364, 373, 570, 668, 848, 1149, 1534 |
| HapII | CCGG | 1 cut(s) | 1535 |
| HhaI | GCGC | 3 cut(s) | 329, 456, 1529 |
| Hin1II | CATG | 7 cut(s) | 425, 689, 712, 827, 995, 1126, 1148 |
| Hin6I | GCGC | 3 cut(s) | 327, 454, 1527 |
| HinP1I | GCGC | 3 cut(s) | 327, 454, 1527 |
| HincII | GTYRAC | 1 cut(s) | 903 |
| HindII | GTYRAC | 1 cut(s) | 903 |
| HinfI | GANTC | 4 cut(s) | 155, 1038, 1493, 1516 |
| HpaII | CCGG | 1 cut(s) | 1535 |
| HphI | GGTGA | 3 cut(s) | 263, 287, 361 |
| Hpy166II | GTNNAC | 5 cut(s) | 61, 757, 843, 903, 1450 |
| Hpy188I | TCNGA | 6 cut(s) | 84, 160, 356, 763, 1043, 1557 |
| Hpy188III | TCNNGA | 6 cut(s) | 140, 238, 304, 332, 709, 1178 |
| Hpy8I | GTNNAC | 5 cut(s) | 61, 757, 843, 903, 1450 |
| Hpy99I | CGWCG | 3 cut(s) | 54, 155, 1303 |
| HpyAV | CCTTC | 5 cut(s) | 244, 745, 937, 973, 1369 |
| HpyCH4III | ACNGT | 2 cut(s) | 58, 1192 |
| HpyCH4IV | ACGT | 3 cut(s) | 63, 905, 1311 |
| HpyCH4V | TGCA | 8 cut(s) | 4, 117, 524, 807, 827, 1099, 1418, 1433 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 370, 379, 854, 1430 |
| HpyF3I | CTNAG | 4 cut(s) | 81, 302, 1107, 1425 |
| HpySE526I | ACGT | 3 cut(s) | 63, 905, 1311 |
| Hsp92II | CATG | 7 cut(s) | 425, 689, 712, 827, 995, 1126, 1148 |
| HspAI | GCGC | 3 cut(s) | 327, 454, 1527 |
| Ksp22I | TGATCA | 1 cut(s) | 351 |
| Kzo9I | GATC | 2 cut(s) | 351, 478 |
| LmnI | GCTCC | 1 cut(s) | 379 |
| Lsp1109I | GCAGC | 2 cut(s) | 192, 1226 |
| LweI | GCATC | 5 cut(s) | 816, 1086, 1172, 1234, 1528 |
| MaeI | CTAG | 1 cut(s) | 383 |
| MaeII | ACGT | 3 cut(s) | 63, 905, 1311 |
| MaeIII | GTNAC | 1 cut(s) | 883 |
| MalI | GATC | 2 cut(s) | 353, 480 |
| MbiI | CCGCTC | 1 cut(s) | 538 |
| MboI | GATC | 2 cut(s) | 351, 478 |
| MboII | GAAGA | 6 cut(s) | 274, 562, 602, 612, 1073, 1519 |
| MfeI | CAATTG | 1 cut(s) | 953 |
| MhlI | GDGCHC | 1 cut(s) | 179 |
| MluCI | AATT | 8 cut(s) | 87, 104, 404, 563, 918, 953, 1117, 1321 |
| MlyI | GAGTC | 1 cut(s) | 164 |
| MmeI | TCCRAC | 1 cut(s) | 1317 |
| MseI | TTAA | 4 cut(s) | 294, 1244, 1272, 1464 |
| MslI | CAYNNNNRTG | 2 cut(s) | 273, 707 |
| MspA1I | CMGCKG | 1 cut(s) | 851 |
| MspI | CCGG | 1 cut(s) | 1535 |
| MunI | CAATTG | 1 cut(s) | 953 |
| Mva1269I | GAATGC | 1 cut(s) | 1396 |
| MvnI | CGCG | 3 cut(s) | 327, 454, 456 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 370, 379, 854, 1430 |
| NdeII | GATC | 2 cut(s) | 351, 478 |
| NlaIII | CATG | 7 cut(s) | 425, 689, 712, 827, 995, 1126, 1148 |
| NlaIV | GGNNCC | 1 cut(s) | 1199 |
| NmeAIII | GCCGAG | 1 cut(s) | 234 |
| NspI | RCATGY | 1 cut(s) | 689 |
| NspV | TTCGAA | 1 cut(s) | 1579 |
| PaeR7I | CTCGAG | 1 cut(s) | 539 |
| PagI | TCATGA | 1 cut(s) | 708 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 156 |
| PctI | GAATGC | 1 cut(s) | 1396 |
| PfeI | GAWTC | 3 cut(s) | 1038, 1493, 1516 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 829 |
| PkrI | GCNGC | 3 cut(s) | 207, 850, 1241 |
| PleI | GAGTC | 1 cut(s) | 163 |
| PpsI | GAGTC | 1 cut(s) | 163 |
| Psp1406I | AACGTT | 1 cut(s) | 905 |
| PspN4I | GGNNCC | 1 cut(s) | 1199 |
| PspPI | GGNCC | 3 cut(s) | 363, 568, 666 |
| PspXI | VCTCGAGB | 1 cut(s) | 539 |
| RsaI | GTAC | 2 cut(s) | 14, 1451 |
| RsaNI | GTAC | 2 cut(s) | 13, 1450 |
| RseI | CAYNNNNRTG | 2 cut(s) | 273, 707 |
| SaqAI | TTAA | 4 cut(s) | 294, 1244, 1272, 1464 |
| SatI | GCNGC | 3 cut(s) | 206, 849, 1240 |
| Sau3AI | GATC | 2 cut(s) | 351, 478 |
| Sau96I | GGNCC | 3 cut(s) | 363, 568, 666 |
| SchI | GAGTC | 1 cut(s) | 164 |
| SduI | GDGCHC | 1 cut(s) | 179 |
| SfaNI | GCATC | 5 cut(s) | 816, 1086, 1172, 1234, 1528 |
| SfcI | CTRYAG | 2 cut(s) | 367, 1549 |
| SfiI | GGCCNNNNNGGCC | 1 cut(s) | 370 |
| Sfr274I | CTCGAG | 1 cut(s) | 539 |
| SfuI | TTCGAA | 1 cut(s) | 1579 |
| SlaI | CTCGAG | 1 cut(s) | 539 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 273, 707 |
| SmlI | CTYRAG | 4 cut(s) | 311, 332, 432, 539 |
| SmoI | CTYRAG | 4 cut(s) | 311, 332, 432, 539 |
| Sse9I | AATT | 8 cut(s) | 87, 104, 404, 563, 918, 953, 1117, 1321 |
| SsiI | CCGC | 4 cut(s) | 298, 536, 849, 1541 |
| SspI | AATATT | 1 cut(s) | 736 |
| SspMI | CTAG | 1 cut(s) | 383 |
| StyI | CCWWGG | 2 cut(s) | 870, 1167 |
| TaaI | ACNGT | 2 cut(s) | 58, 1192 |
| TaiI | ACGT | 3 cut(s) | 66, 908, 1314 |
| TaqI | TCGA | 9 cut(s) | 52, 153, 540, 692, 1155, 1298, 1352, 1359, 1579 |
| TasI | AATT | 8 cut(s) | 87, 104, 404, 563, 918, 953, 1117, 1321 |
| TatI | WGTACW | 1 cut(s) | 1449 |
| TauI | GCSGC | 1 cut(s) | 851 |
| TfiI | GAWTC | 3 cut(s) | 1038, 1493, 1516 |
| Tru1I | TTAA | 4 cut(s) | 294, 1244, 1272, 1464 |
| Tru9I | TTAA | 4 cut(s) | 294, 1244, 1272, 1464 |
| TscAI | CASTG | 2 cut(s) | 834, 1111 |
| TseI | GCWGC | 2 cut(s) | 205, 1239 |
| TspRI | CASTG | 2 cut(s) | 834, 1111 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 829 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 622 |
| XapI | RAATTY | 4 cut(s) | 87, 104, 404, 1321 |
| XceI | RCATGY | 1 cut(s) | 689 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 583 |
| XhoI | CTCGAG | 1 cut(s) | 539 |
| XmiI | GTMKAC | 2 cut(s) | 756, 842 |
| XspI | CTAG | 1 cut(s) | 383 |