pycom11g10860

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
OG0012933
Physical Location & Seq
Reverse (-)
9222875 .. 9223271
397 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 300 bp
ATGCAGTCCATGTTTAACCTCCATGGCAGCTTTGGCCTTCCTCTCTGTGTTTCAGGGATAACCCATCACCATCTCACCTTTTCTAAGGAGATGGTAGATCATGATCGCAGGAGGGAAGCCATGAGAAGGAAGAGATCGCAAGCCAGGGCAGCTCTGCATGCAAATCAAGAAGTGGGTTTTGAAATTAGAAGTGAAAGAGTTGCAGAAGAAGAGATCAAGTTTGATGATGGTGGAGATCTAGCTACTGCACTACATGATCTGTGTTGCAGTTATTTGGCTTGTACTGCAAAAGCTGCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

100

Amino Acids

11.13

Weight (kDa)

6.64

Isoelectric Point (pI)

64.65

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012933)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G60400 AT5G60400 AT5G60400
fragaria_vesca FvH4_3g33040
malus_domestica MD03G1112500.v1.1 MD11G1131400.v1.1
prunus_persica Prupe.6G095800_v2.0.a1 Prupe.6G096000_v2.0.a1
pyrus_communis pycom11g10860
rosa_chinensis RchiOBHm_Chr5g0060411
rosa_multiflora Rmu_sc0003270.1_g000013
rosa_roxburghii Rroxscaffold_1G00020420
rosa_rugosa Rorug05G0329700
rosa_samantha Rh5AG394400 Rh5BG406600 Rh5CG430400 Rh5DG421700
rosa_wichuraiana Rw5G037100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 1 cut(s) 283
AfiI CCNNNNNNNGG 1 cut(s) 126
AgsI TTSAA 1 cut(s) 182
AjnI CCWGG 1 cut(s) 143
AluBI AGCT 4 cut(s) 30, 152, 242, 293
AluI AGCT 4 cut(s) 30, 152, 242, 293
AoxI GGCC 1 cut(s) 34
ApeKI GCWGC 3 cut(s) 27, 149, 293
AsuHPI GGTGA 2 cut(s) 59, 67
BbvI GCAGC 3 cut(s) 39, 161, 280
BccI CCATC 4 cut(s) 72, 78, 85, 221
BciT130I CCWGG 1 cut(s) 145
BfaI CTAG 1 cut(s) 239
BglII AGATCT 1 cut(s) 235
BisI GCNGC 3 cut(s) 28, 150, 294
BlsI GCNGC 3 cut(s) 29, 151, 295
Bme1390I CCNGG 1 cut(s) 145
BmrFI CCNGG 1 cut(s) 145
BsaBI GATNNNNATC 1 cut(s) 102
BsaJI CCNNGG 2 cut(s) 22, 144
Bsc4I CCNNNNNNNGG 1 cut(s) 126
Bse8I GATNNNNATC 1 cut(s) 102
BseBI CCWGG 1 cut(s) 145
BseDI CCNNGG 2 cut(s) 22, 144
BseJI GATNNNNATC 1 cut(s) 102
BseLI CCNNNNNNNGG 1 cut(s) 126
BseXI GCAGC 3 cut(s) 39, 161, 280
BsgI GTGCAG 1 cut(s) 231
BshFI GGCC 1 cut(s) 36
BslI CCNNNNNNNGG 1 cut(s) 126
BsnI GGCC 1 cut(s) 36
Bsp143I GATC 6 cut(s) 97, 103, 134, 213, 235, 256
Bsp19I CCATGG 1 cut(s) 22
BspANI GGCC 1 cut(s) 36
BspHI TCATGA 1 cut(s) 100
BssECI CCNNGG 2 cut(s) 22, 144
BssMI GATC 6 cut(s) 97, 103, 134, 213, 235, 256
BssT1I CCWWGG 1 cut(s) 22
Bst2UI CCWGG 1 cut(s) 145
Bst6I CTCTTC 2 cut(s) 125, 204
BstAPI GCANNNNNTGC 1 cut(s) 293
BstC8I GCNNGC 2 cut(s) 141, 159
BstDEI CTNAG 1 cut(s) 84
BstDSI CCRYGG 1 cut(s) 22
BstKTI GATC 6 cut(s) 100, 106, 137, 216, 238, 259
BstMBI GATC 6 cut(s) 97, 103, 134, 213, 235, 256
BstMWI GCNNNNNNNGC 5 cut(s) 33, 149, 158, 284, 293
BstNI CCWGG 1 cut(s) 145
BstNSI RCATGY 1 cut(s) 161
BstSCI CCNGG 1 cut(s) 143
BstV1I GCAGC 3 cut(s) 39, 161, 280
BstX2I RGATCY 1 cut(s) 235
BstYI RGATCY 1 cut(s) 235
BsuRI GGCC 1 cut(s) 36
BtgI CCRYGG 1 cut(s) 22
Cac8I GCNNGC 2 cut(s) 141, 159
CciI TCATGA 1 cut(s) 100
Csp6I GTAC 1 cut(s) 282
CviAII CATG 6 cut(s) 10, 23, 101, 121, 158, 254
CviJI RGCY 8 cut(s) 30, 36, 119, 143, 152, 242, 278, 293
CviKI_1 RGCY 8 cut(s) 30, 36, 119, 143, 152, 242, 278, 293
CviQI GTAC 1 cut(s) 282
DdeI CTNAG 1 cut(s) 84
DpnI GATC 6 cut(s) 99, 105, 136, 215, 237, 258
DpnII GATC 6 cut(s) 97, 103, 134, 213, 235, 256
Eam1104I CTCTTC 2 cut(s) 125, 204
EarI CTCTTC 2 cut(s) 125, 204
Eco130I CCWWGG 1 cut(s) 22
EcoRII CCWGG 1 cut(s) 143
EcoT14I CCWWGG 1 cut(s) 22
ErhI CCWWGG 1 cut(s) 22
FaeI CATG 6 cut(s) 13, 26, 104, 124, 161, 257
FaiI YATR 7 cut(s) 11, 24, 102, 122, 159, 255, 298
FatI CATG 6 cut(s) 9, 22, 100, 120, 157, 253
Fnu4HI GCNGC 3 cut(s) 28, 150, 294
Fsp4HI GCNGC 3 cut(s) 28, 150, 294
FspBI CTAG 1 cut(s) 239
GluI GCNGC 3 cut(s) 28, 150, 294
HaeIII GGCC 1 cut(s) 36
Hin1II CATG 6 cut(s) 13, 26, 104, 124, 161, 257
HphI GGTGA 2 cut(s) 59, 67
Hpy188III TCNNGA 2 cut(s) 101, 167
HpyAV CCTTC 2 cut(s) 47, 120
HpyCH4V TGCA 8 cut(s) 4, 157, 161, 203, 248, 267, 287, 296
HpyF10VI GCNNNNNNNGC 5 cut(s) 33, 149, 158, 284, 293
HpyF3I CTNAG 1 cut(s) 84
Hsp92II CATG 6 cut(s) 13, 26, 104, 124, 161, 257
Kzo9I GATC 6 cut(s) 97, 103, 134, 213, 235, 256
LpnPI CCDG 4 cut(s) 39, 94, 130, 157
Lsp1109I GCAGC 3 cut(s) 39, 161, 280
MaeI CTAG 1 cut(s) 239
MalI GATC 6 cut(s) 99, 105, 136, 215, 237, 258
MboI GATC 6 cut(s) 97, 103, 134, 213, 235, 256
MboII GAAGA 3 cut(s) 142, 218, 221
MflI RGATCY 1 cut(s) 235
MluCI AATT 1 cut(s) 183
MnlI CCTC 3 cut(s) 29, 51, 105
MseI TTAA 1 cut(s) 15
MspR9I CCNGG 1 cut(s) 145
MvaI CCWGG 1 cut(s) 145
MwoI GCNNNNNNNGC 5 cut(s) 33, 149, 158, 284, 293
NcoI CCATGG 1 cut(s) 22
NdeII GATC 6 cut(s) 97, 103, 134, 213, 235, 256
NlaIII CATG 6 cut(s) 13, 26, 104, 124, 161, 257
NspI RCATGY 1 cut(s) 161
PaeI GCATGC 1 cut(s) 161
PagI TCATGA 1 cut(s) 100
PkrI GCNGC 3 cut(s) 29, 151, 295
Psp6I CCWGG 1 cut(s) 143
PspGI CCWGG 1 cut(s) 143
PsuI RGATCY 1 cut(s) 235
RsaI GTAC 1 cut(s) 283
RsaNI GTAC 1 cut(s) 282
SaqAI TTAA 1 cut(s) 15
SatI GCNGC 3 cut(s) 28, 150, 294
Sau3AI GATC 6 cut(s) 97, 103, 134, 213, 235, 256
ScrFI CCNGG 1 cut(s) 145
SetI ASST 6 cut(s) 21, 32, 80, 154, 244, 295
SphI GCATGC 1 cut(s) 161
Sse9I AATT 1 cut(s) 183
SspMI CTAG 1 cut(s) 239
StyD4I CCNGG 1 cut(s) 143
StyI CCWWGG 1 cut(s) 22
TasI AATT 1 cut(s) 183
TatI WGTACW 1 cut(s) 281
Tru1I TTAA 1 cut(s) 15
Tru9I TTAA 1 cut(s) 15
TseI GCWGC 3 cut(s) 27, 149, 293
XceI RCATGY 1 cut(s) 161
XcmI CCANNNNNNNNNTGG 1 cut(s) 29
XspI CTAG 1 cut(s) 239
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.