Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0015889

Physical Location & Seq

Genomic Coordinates Forward (+)

11064834 .. 11066060

Gene Structure 1227 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1167 bp

ATGGTTAACTGTGACACTCACTCCTCTTTCCTTGCTTCCCTTCATTGCTCTCTCTCCCCTCCCTCTCACTCCCTCTTAGCCCTTCCTTTTCTTTGTTCACATCAAACCTCTTTCACGGTTTCCTCTCTCTCCTCTAATTTCTTTCTCTTTGGTCAAAACCAAATTCTGGGGTTTTTGTCTGTGAGCATGGAGGGCCAAGAAGCATTAGTCGTGACTAATGAGCAAGCGTCACAGATGATCATGATCAAAGGCAAGCGTACCAAGCGCCAGAGGCCTCAGTCCCCGAATGGGGTAGTCACCGCGGCGGTGACCTCTAGCTCATCGAGTGCCTGTGGAGTTGCTACCATTGGAGGAGGAGATCACGAGTACAACTATTATGGAAGTTCATTTACATCTCCCACAACTTCTAGTGAGATTTATGAGAGCACGGAAGAAGAAGAGGACATGGCAAATTGCCTAATCCTCTTGGCTCAGGGTGATCATGGTAATCCAAAGCAGATCATTGAAGAAAGATTAGCACAAAATATTAACATGGGCAAGGCTGGTTTTTTGGTCTATGAGTGCAAAACATGCAACAGAACTTTCCCTTCATTTCAAGCACTTGGTGGCCATAGAGCAAGTCACAAAAAACCGAAGTCCATGAGCAGCACGGAGGAGATAATAAAAAAATTGCCACCACCAGCGGCTGCGCCACCAACCCTCCATTCCATCACAGCAACAACTTTTGAGAAATTTGAAGATCAAAGCAAGCAGTTTATCAAATATAAGAGCAGCCCATCTCCTGCAATTCCAATCCAAATAGGTAACAAGCCTAAGATTCATGAGTGTTCAATCTGTGGGTCTGAGTTCACATCTGGTCAGGCACTTGGTGGCCACATGAGAAGGCACAGAACAGCATCTGCGGCAACCAATAGTAACTCTACTAGTGGTGGACCTGGTGGTGCTACTGCTACACATGTGGCTGTGAGTAATAGTAGCAATGATATGATTGGCACAAGTACCAAACTGCAGAGAAATGTTCTCACACTGGATCGATCCATTCCTGCACCAGAAGATCATGATCATCATCACCATCACCATCATCGTGAGTCTAAGTTTCAGTTTGTGCCTACCCAACAAACTACCCTTGTCTTCAACGCCCCTGCTTTGGTGGATTGTCAGTATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C2H2_6

Protein Analysis

389

Amino Acids

41.96

Weight (kDa)

7.33

Isoelectric Point (pI)

58.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-C2H2_6	PF13912	185 - 211	7.8e-13	C2H2-type zinc finger
zf-C2H2_6	PF13912	274 - 298	1.2e-10	C2H2-type zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015889)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G28200
fragaria_vesca	FvH4_3g30610
malus_domestica	MD03G1128800.v1.1
prunus_persica	Prupe.6G113100_v2.0.a1
pyrus_communis	pycom11g12160
rosa_chinensis	RchiOBHm_Chr5g0056681
rosa_laevigata	RLG00000035120
rosa_multiflora	Rmu_sc0005086.1_g000004
rosa_roxburghii	Rroxscaffold_1G00023670
rosa_rugosa	Rorug05G0301300
rosa_samantha	Rh5AG371600 Rh5BG383500 Rh5CG406600 Rh5DG396500
rosa_wichuraiana	Rw5G034860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	166
AccII	CGCG	1 cut(s)	302
AciI	CCGC	5 cut(s)	300, 302, 305, 683, 902
AclWI	GGATC	2 cut(s)	1029, 1038
AcoI	YGGCCR	2 cut(s)	607, 871
AcsI	RAATTY	2 cut(s)	162, 731
AdeI	CACNNNGTG	2 cut(s)	605, 869
AfaI	GTAC	3 cut(s)	259, 368, 1000
AfiI	CCNNNNNNNGG	4 cut(s)	166, 288, 289, 1147
AflIII	ACRYGT	1 cut(s)	955
AgsI	TTSAA	5 cut(s)	506, 596, 737, 831, 1135
AhlI	ACTAGT	1 cut(s)	923
AjnI	CCWGG	1 cut(s)	934
AjuI	GAANNNNNNNTTGG	2 cut(s)	688, 720
AluBI	AGCT	1 cut(s)	318
AluI	AGCT	1 cut(s)	318
Alw21I	GWGCWC	1 cut(s)	428
AlwI	GGATC	2 cut(s)	1029, 1038
AlwNI	CAGNNNCTG	2 cut(s)	686, 899
AoxI	GGCC	4 cut(s)	193, 272, 607, 871
ApeKI	GCWGC	3 cut(s)	645, 686, 771
ApoI	RAATTY	2 cut(s)	162, 731
AspLEI	GCGC	2 cut(s)	267, 691
AspS9I	GGNCC	2 cut(s)	193, 932
AsuHPI	GGTGA	5 cut(s)	289, 319, 488, 1061, 1067
AvaII	GGWCC	1 cut(s)	932
BalI	TGGCCA	2 cut(s)	609, 873
BarI	GAAGNNNNNNTAC	2 cut(s)	373, 405
BauI	CACGAG	1 cut(s)	362
BbsI	GAAGAC	1 cut(s)	1123
Bbv12I	GWGCWC	1 cut(s)	428
BbvI	GCAGC	3 cut(s)	657, 673, 783
BccI	CCATC	4 cut(s)	716, 784, 1080, 1086
BciT130I	CCWGG	1 cut(s)	936
BclI	TGATCA	4 cut(s)	237, 243, 478, 1060
BcuI	ACTAGT	1 cut(s)	923
BfaI	CTAG	3 cut(s)	315, 408, 924
BfmI	CTRYAG	1 cut(s)	1007
BfoI	RGCGCY	1 cut(s)	268
BisI	GCNGC	6 cut(s)	303, 646, 684, 687, 772, 903
BlsI	GCNGC	6 cut(s)	304, 647, 685, 688, 773, 904
Bme1390I	CCNGG	1 cut(s)	936
Bme18I	GGWCC	1 cut(s)	932
BmgT120I	GGNCC	2 cut(s)	193, 932
BmrFI	CCNGG	1 cut(s)	936
BmsI	GCATC	1 cut(s)	905
BpiI	GAAGAC	1 cut(s)	1123
Bpu10I	CCTNAGC	1 cut(s)	471
Bsa29I	ATCGAT	1 cut(s)	1033
BsaBI	GATNNNNATC	3 cut(s)	242, 1059, 1065
BsaJI	CCNNGG	1 cut(s)	300
BsaXI	ACNNNNNCTCC	4 cut(s)	5, 35, 684, 714
Bsc4I	CCNNNNNNNGG	4 cut(s)	166, 288, 289, 1147
Bse1I	ACTGG	1 cut(s)	1032
Bse3DI	GCAATG	2 cut(s)	43, 985
Bse8I	GATNNNNATC	3 cut(s)	242, 1059, 1065
BseBI	CCWGG	1 cut(s)	936
BseCI	ATCGAT	1 cut(s)	1033
BseDI	CCNNGG	1 cut(s)	300
BseJI	GATNNNNATC	3 cut(s)	242, 1059, 1065
BseLI	CCNNNNNNNGG	4 cut(s)	166, 288, 289, 1147
BseMI	GCAATG	2 cut(s)	43, 985
BseMII	CTCAG	3 cut(s)	290, 485, 834
BseNI	ACTGG	1 cut(s)	1032
BseRI	GAGGAG	5 cut(s)	13, 121, 366, 369, 668
BseXI	GCAGC	3 cut(s)	657, 673, 783
BsgI	GTGCAG	1 cut(s)	1029
Bsh1236I	CGCG	1 cut(s)	302
BshFI	GGCC	4 cut(s)	195, 274, 609, 873
BshVI	ATCGAT	1 cut(s)	1033
BsiHKAI	GWGCWC	1 cut(s)	428
BslFI	GGGAC	1 cut(s)	265
BslI	CCNNNNNNNGG	4 cut(s)	166, 288, 289, 1147
BsmFI	GGGAC	1 cut(s)	265
BsnI	GGCC	4 cut(s)	195, 274, 609, 873
Bsp1286I	GDGCHC	1 cut(s)	428
BspACI	CCGC	5 cut(s)	300, 302, 305, 683, 902
BspANI	GGCC	4 cut(s)	195, 274, 609, 873
BspCNI	CTCAG	3 cut(s)	289, 484, 835
BspDI	ATCGAT	1 cut(s)	1033
BspFNI	CGCG	1 cut(s)	302
BspHI	TCATGA	3 cut(s)	240, 820, 1057
BspMAI	CTGCAG	1 cut(s)	1011
BspPI	GGATC	2 cut(s)	1029, 1038
BsrDI	GCAATG	2 cut(s)	43, 985
BsrI	ACTGG	1 cut(s)	1032
BssECI	CCNNGG	1 cut(s)	300
BssSI	CACGAG	1 cut(s)	362
Bst2BI	CACGAG	1 cut(s)	362
Bst2UI	CCWGG	1 cut(s)	936
Bst4CI	ACNGT	2 cut(s)	11, 118
Bst6I	CTCTTC	1 cut(s)	432
BstAPI	GCANNNNNTGC	1 cut(s)	570
BstC8I	GCNNGC	3 cut(s)	225, 254, 749
BstDEI	CTNAG	6 cut(s)	76, 276, 471, 813, 843, 1092
BstDSI	CCRYGG	1 cut(s)	300
BstEII	GGTNACC	1 cut(s)	307
BstFNI	CGCG	1 cut(s)	302
BstH2I	RGCGCY	1 cut(s)	268
BstHHI	GCGC	2 cut(s)	267, 691
BstMWI	GCNNNNNNNGC	5 cut(s)	192, 262, 271, 570, 902
BstNI	CCWGG	1 cut(s)	936
BstNSI	RCATGY	2 cut(s)	573, 959
BstPI	GGTNACC	1 cut(s)	307
BstSCI	CCNGG	1 cut(s)	934
BstSFI	CTRYAG	1 cut(s)	1007
BstUI	CGCG	1 cut(s)	302
BstV1I	GCAGC	3 cut(s)	657, 673, 783
BstV2I	GAAGAC	1 cut(s)	1123
Bsu15I	ATCGAT	1 cut(s)	1033
BsuRI	GGCC	4 cut(s)	195, 274, 609, 873
BsuTUI	ATCGAT	1 cut(s)	1033
BtgI	CCRYGG	1 cut(s)	300
BtsIMutI	CAGTG	1 cut(s)	1025
Cac8I	GCNNGC	3 cut(s)	225, 254, 749
CaiI	CAGNNNCTG	2 cut(s)	686, 899
CciI	TCATGA	3 cut(s)	240, 820, 1057
CfoI	GCGC	2 cut(s)	267, 691
Cfr13I	GGNCC	2 cut(s)	193, 932
Cfr42I	CCGCGG	1 cut(s)	303
ClaI	ATCGAT	1 cut(s)	1033
CseI	GACGC	1 cut(s)	216
CsiI	ACCWGGT	1 cut(s)	934
Csp6I	GTAC	3 cut(s)	258, 367, 999
CviQI	GTAC	3 cut(s)	258, 367, 999
DdeI	CTNAG	6 cut(s)	76, 276, 471, 813, 843, 1092
DraIII	CACNNNGTG	2 cut(s)	605, 869
EaeI	YGGCCR	2 cut(s)	607, 871
Eam1104I	CTCTTC	1 cut(s)	432
EarI	CTCTTC	1 cut(s)	432
Eco147I	AGGCCT	1 cut(s)	274
Eco47I	GGWCC	1 cut(s)	932
Eco91I	GGTNACC	1 cut(s)	307
EcoO65I	GGTNACC	1 cut(s)	307
EcoRII	CCWGG	1 cut(s)	934
FaqI	GGGAC	1 cut(s)	265
FbaI	TGATCA	4 cut(s)	237, 243, 478, 1060
Fnu4HI	GCNGC	6 cut(s)	303, 646, 684, 687, 772, 903
Fsp4HI	GCNGC	6 cut(s)	303, 646, 684, 687, 772, 903
FspBI	CTAG	3 cut(s)	315, 408, 924
GlaI	GCGC	2 cut(s)	266, 690
GluI	GCNGC	6 cut(s)	303, 646, 684, 687, 772, 903
HaeII	RGCGCY	1 cut(s)	268
HaeIII	GGCC	4 cut(s)	195, 274, 609, 873
HgaI	GACGC	1 cut(s)	216
HhaI	GCGC	2 cut(s)	267, 691
Hin6I	GCGC	2 cut(s)	265, 689
HinP1I	GCGC	2 cut(s)	265, 689
HincII	GTYRAC	1 cut(s)	7
HindII	GTYRAC	1 cut(s)	7
HinfI	GANTC	2 cut(s)	817, 1088
HpaI	GTTAAC	1 cut(s)	7
HphI	GGTGA	5 cut(s)	289, 319, 488, 1061, 1067
Hpy166II	GTNNAC	4 cut(s)	7, 98, 849, 932
Hpy188I	TCNGA	1 cut(s)	844
Hpy188III	TCNNGA	6 cut(s)	211, 241, 362, 821, 1058, 1085
Hpy8I	GTNNAC	4 cut(s)	7, 98, 849, 932
HpyAV	CCTTC	4 cut(s)	50, 92, 597, 876
HpyCH4III	ACNGT	2 cut(s)	11, 118
HpyCH4V	TGCA	5 cut(s)	564, 573, 785, 1009, 1046
HpyF10VI	GCNNNNNNNGC	5 cut(s)	192, 262, 271, 570, 902
HpyF3I	CTNAG	6 cut(s)	76, 276, 471, 813, 843, 1092
HspAI	GCGC	2 cut(s)	265, 689
Ksp22I	TGATCA	4 cut(s)	237, 243, 478, 1060
KspAI	GTTAAC	1 cut(s)	7
KspI	CCGCGG	1 cut(s)	303
Lsp1109I	GCAGC	3 cut(s)	657, 673, 783
LweI	GCATC	1 cut(s)	905
MabI	ACCWGGT	1 cut(s)	934
MaeI	CTAG	3 cut(s)	315, 408, 924
MaeIII	GTNAC	8 cut(s)	11, 211, 228, 295, 307, 620, 803, 914
MboII	GAAGA	7 cut(s)	443, 446, 449, 518, 749, 1064, 1123
MhlI	GDGCHC	1 cut(s)	428
MlsI	TGGCCA	2 cut(s)	609, 873
MluCI	AATT	6 cut(s)	136, 162, 451, 668, 731, 786
MluNI	TGGCCA	2 cut(s)	609, 873
MlyI	GAGTC	1 cut(s)	1097
Mox20I	TGGCCA	2 cut(s)	609, 873
MscI	TGGCCA	2 cut(s)	609, 873
MseI	TTAA	3 cut(s)	6, 528, 1165
MslI	CAYNNNNRTG	1 cut(s)	1083
Msp20I	TGGCCA	2 cut(s)	609, 873
MspA1I	CMGCKG	2 cut(s)	302, 683
MspR9I	CCNGG	1 cut(s)	936
MvaI	CCWGG	1 cut(s)	936
MvnI	CGCG	1 cut(s)	302
MwoI	GCNNNNNNNGC	5 cut(s)	192, 262, 271, 570, 902
NmuCI	GTSAC	6 cut(s)	11, 211, 228, 295, 307, 620
NspI	RCATGY	2 cut(s)	573, 959
PagI	TCATGA	3 cut(s)	240, 820, 1057
PceI	AGGCCT	1 cut(s)	274
PciI	ACATGT	1 cut(s)	955
PfeI	GAWTC	1 cut(s)	817
PflMI	CCANNNNNTGG	1 cut(s)	166
PkrI	GCNGC	6 cut(s)	304, 647, 685, 688, 773, 904
PleI	GAGTC	1 cut(s)	1096
PpsI	GAGTC	1 cut(s)	1096
PscI	ACATGT	1 cut(s)	955
Psp6I	CCWGG	1 cut(s)	934
PspEI	GGTNACC	1 cut(s)	307
PspGI	CCWGG	1 cut(s)	934
PspPI	GGNCC	2 cut(s)	193, 932
PstI	CTGCAG	1 cut(s)	1011
PstNI	CAGNNNCTG	2 cut(s)	686, 899
RsaI	GTAC	3 cut(s)	259, 368, 1000
RsaNI	GTAC	3 cut(s)	258, 367, 999
RseI	CAYNNNNRTG	1 cut(s)	1083
SacII	CCGCGG	1 cut(s)	303
SaqAI	TTAA	3 cut(s)	6, 528, 1165
SatI	GCNGC	6 cut(s)	303, 646, 684, 687, 772, 903
Sau96I	GGNCC	2 cut(s)	193, 932
SchI	GAGTC	1 cut(s)	1097
ScrFI	CCNGG	1 cut(s)	936
SduI	GDGCHC	1 cut(s)	428
SetI	ASST	5 cut(s)	110, 314, 320, 805, 937
SexAI	ACCWGGT	1 cut(s)	934
SfaNI	GCATC	1 cut(s)	905
SfcI	CTRYAG	1 cut(s)	1007
Sfr303I	CCGCGG	1 cut(s)	303
SgrBI	CCGCGG	1 cut(s)	303
SinI	GGWCC	1 cut(s)	932
SmiMI	CAYNNNNRTG	1 cut(s)	1083
SpeI	ACTAGT	1 cut(s)	923
Sse9I	AATT	6 cut(s)	136, 162, 451, 668, 731, 786
SseBI	AGGCCT	1 cut(s)	274
SsiI	CCGC	5 cut(s)	300, 302, 305, 683, 902
SspI	AATATT	1 cut(s)	526
SspMI	CTAG	3 cut(s)	315, 408, 924
StuI	AGGCCT	1 cut(s)	274
StyD4I	CCNGG	1 cut(s)	934
TaaI	ACNGT	2 cut(s)	11, 118
TaqI	TCGA	2 cut(s)	323, 1033
TasI	AATT	6 cut(s)	136, 162, 451, 668, 731, 786
TatI	WGTACW	1 cut(s)	366
TauI	GCSGC	3 cut(s)	305, 686, 905
TfiI	GAWTC	1 cut(s)	817
Tru1I	TTAA	3 cut(s)	6, 528, 1165
Tru9I	TTAA	3 cut(s)	6, 528, 1165
TscAI	CASTG	1 cut(s)	1032
TseFI	GTSAC	6 cut(s)	11, 211, 228, 295, 307, 620
TseI	GCWGC	3 cut(s)	645, 686, 771
Tsp45I	GTSAC	6 cut(s)	11, 211, 228, 295, 307, 620
TspDTI	ATGAA	4 cut(s)	32, 375, 579, 809
TspGWI	ACGGA	2 cut(s)	443, 665
TspRI	CASTG	1 cut(s)	1032
Van91I	CCANNNNNTGG	1 cut(s)	166
VpaK11BI	GGWCC	1 cut(s)	932
XapI	RAATTY	2 cut(s)	162, 731
XceI	RCATGY	2 cut(s)	573, 959
XspI	CTAG	3 cut(s)	315, 408, 924

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.