pycom11g12900

No description available

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
Physical Location & Seq
Reverse (-)
11904842 .. 11905120
279 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom11g12900.1

Sequence Viewer

Length: 279 bp
ATGTCCCTTCTAAACTTCCATCGCCCAGTTTTCGTTCCCGACAGTCCAACTCACATTTACTCCGATTGCTCAAACAAAAACCTTGATCCTTCACCACATTTTCAAAATGTCACCTGCCTGCATGCATGTGGAGCTTCTTCAAATATTCAAGAACCCAAACTTTACGGGCATACATCATCCTCTTGCTTACTAGTTTATGATCTCACAAAGCCAGACTTGGGTTTTCATCCAAGAGGTCGCACTTGCTCATGTTACAGCCAAGGTTCTAAAAAACGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

93

Amino Acids

10.24

Weight (kDa)

8.6

Isoelectric Point (pI)

68.94

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0013423)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 122
Acc36I ACCTGC 1 cut(s) 122
AclI AACGTT 1 cut(s) 274
AclWI GGATC 1 cut(s) 80
AfiI CCNNNNNNNGG 1 cut(s) 218
AgsI TTSAA 3 cut(s) 104, 141, 149
AhlI ACTAGT 1 cut(s) 190
AluBI AGCT 1 cut(s) 134
AluI AGCT 1 cut(s) 134
AlwI GGATC 1 cut(s) 80
AsuHPI GGTGA 2 cut(s) 84, 103
BccI CCATC 1 cut(s) 27
BcuI ACTAGT 1 cut(s) 190
BfaI CTAG 1 cut(s) 191
BfuAI ACCTGC 1 cut(s) 122
BmrI ACTGGG 1 cut(s) 20
BmuI ACTGGG 1 cut(s) 20
BsaJI CCNNGG 1 cut(s) 259
BsaXI ACNNNNNCTCC 2 cut(s) 44, 74
Bsc4I CCNNNNNNNGG 1 cut(s) 218
Bse1I ACTGG 1 cut(s) 26
BseDI CCNNGG 1 cut(s) 259
BseGI GGATG 2 cut(s) 176, 226
BseLI CCNNNNNNNGG 1 cut(s) 218
BseNI ACTGG 1 cut(s) 26
BslI CCNNNNNNNGG 1 cut(s) 218
Bsp143I GATC 2 cut(s) 85, 199
BspMI ACCTGC 1 cut(s) 122
BspPI GGATC 1 cut(s) 80
BsrI ACTGG 1 cut(s) 26
BssECI CCNNGG 1 cut(s) 259
BssMI GATC 2 cut(s) 85, 199
BssT1I CCWWGG 1 cut(s) 259
Bst4CI ACNGT 1 cut(s) 44
BstC8I GCNNGC 2 cut(s) 119, 123
BstF5I GGATG 2 cut(s) 176, 226
BstKTI GATC 2 cut(s) 88, 202
BstMBI GATC 2 cut(s) 85, 199
BstMWI GCNNNNNNNGC 1 cut(s) 131
BstNSI RCATGY 2 cut(s) 125, 129
BtgZI GCGATG 1 cut(s) 5
BtsCI GGATG 2 cut(s) 176, 226
BveI ACCTGC 1 cut(s) 122
Cac8I GCNNGC 2 cut(s) 119, 123
CviAII CATG 3 cut(s) 122, 126, 249
CviJI RGCY 3 cut(s) 134, 211, 258
CviKI_1 RGCY 3 cut(s) 134, 211, 258
DpnI GATC 2 cut(s) 87, 201
DpnII GATC 2 cut(s) 85, 199
Eco130I CCWWGG 1 cut(s) 259
EcoT14I CCWWGG 1 cut(s) 259
EcoT22I ATGCAT 1 cut(s) 127
ErhI CCWWGG 1 cut(s) 259
FaeI CATG 3 cut(s) 125, 129, 252
FaiI YATR 5 cut(s) 123, 127, 171, 198, 250
FalI AAGNNNNNCTT 2 cut(s) 200, 232
FatI CATG 3 cut(s) 121, 125, 248
FokI GGATG 2 cut(s) 163, 213
FspBI CTAG 1 cut(s) 191
Hin1II CATG 3 cut(s) 125, 129, 252
HphI GGTGA 2 cut(s) 84, 103
Hpy188I TCNGA 1 cut(s) 64
Hpy188III TCNNGA 2 cut(s) 38, 149
HpyAV CCTTC 2 cut(s) 17, 99
HpyCH4III ACNGT 1 cut(s) 44
HpyCH4IV ACGT 1 cut(s) 274
HpyCH4V TGCA 2 cut(s) 121, 125
HpyF10VI GCNNNNNNNGC 1 cut(s) 131
HpySE526I ACGT 1 cut(s) 274
Hsp92II CATG 3 cut(s) 125, 129, 252
Kzo9I GATC 2 cut(s) 85, 199
LmnI GCTCC 1 cut(s) 131
LpnPI CCDG 4 cut(s) 39, 127, 131, 225
MaeI CTAG 1 cut(s) 191
MaeII ACGT 1 cut(s) 274
MaeIII GTNAC 2 cut(s) 109, 251
MalI GATC 2 cut(s) 87, 201
MboI GATC 2 cut(s) 85, 199
MboII GAAGA 1 cut(s) 129
MmeI TCCRAC 1 cut(s) 71
MnlI CCTC 2 cut(s) 190, 227
Mph1103I ATGCAT 1 cut(s) 127
MslI CAYNNNNRTG 1 cut(s) 126
MwoI GCNNNNNNNGC 1 cut(s) 131
NdeII GATC 2 cut(s) 85, 199
NlaIII CATG 3 cut(s) 125, 129, 252
NmuCI GTSAC 1 cut(s) 109
NsiI ATGCAT 1 cut(s) 127
NspI RCATGY 2 cut(s) 125, 129
PaeI GCATGC 1 cut(s) 125
PaqCI CACCTGC 1 cut(s) 122
Psp1406I AACGTT 1 cut(s) 274
RseI CAYNNNNRTG 1 cut(s) 126
Sau3AI GATC 2 cut(s) 85, 199
SetI ASST 6 cut(s) 84, 116, 136, 238, 265, 277
SmiMI CAYNNNNRTG 1 cut(s) 126
SpeI ACTAGT 1 cut(s) 190
SphI GCATGC 1 cut(s) 125
SspI AATATT 1 cut(s) 145
SspMI CTAG 1 cut(s) 191
StyI CCWWGG 1 cut(s) 259
TaaI ACNGT 1 cut(s) 44
TaiI ACGT 1 cut(s) 277
TseFI GTSAC 1 cut(s) 109
Tsp45I GTSAC 1 cut(s) 109
TspDTI ATGAA 1 cut(s) 215
XceI RCATGY 2 cut(s) 125, 129
XspI CTAG 1 cut(s) 191
Zsp2I ATGCAT 1 cut(s) 127
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.