Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0007853

Physical Location & Seq

Genomic Coordinates Forward (+)

12083595 .. 12089509

Gene Structure 5915 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1293 bp

ATGCGTTCAAGGGATAAAATCGCCTACTTTTACGACGGGGATGTGGGTAGCGTCTACTTTGGGCCGAACCACCCTATGAAACCGCACCGGCTATGTATGACGCATCATCTCGTCCTCTCATATGATCTCCACAAAAAGATGGAAATTTATCGGCCACATAAGGCATATCCGGTGGAGCTTGCGCAATTCCATTCAGCTGACTATGTCGAGTTTCTACACCGGATTACGCCCGACACCCAGCACTTATTCTCGAATGAAATGGCAAGATATAATCTTGGAGAAGATTGCCCTGTATTTGATAACTTATTTGAATTTTGTCAAATTTATGCCGGCGGAACAATAGATGCTGCACGTAGATTGAACAATAAACTTTGTGACATTGCTATTAATTGGGCTGGTGGACTGCACCATGCCAAAAAGTGTGAGGCATCTGGATTTTGTTACATCAATGACTTGGTCTTGGGCATATTGGAGCTTCTAAAACATCATGCCCGAGTTTTATATATTGACATAGATGTGCATCATGGTGATGGTGTAGAAGAAGCTTTTTATTTTACTGATAGGGTGATGACTGTTAGCTTTCACAAGTTTGGGGATTTGTTTTTCCCGGGAACAGGTGATGTGAAGCAAGTAGGAGAAAGAGAAGGCAAGTTTTATGCCATCAATGTCCCACTAAAGGATGGAATAGATGACGCTAGCTTCAATAGACTTTTCAAGACTATTATTTCCAAGGTTGTTGAGACATATCTACCCGGCGCGATAGTTCTCCAGTGTGGAGCCGATTCTCTTGCTGGAGACCGTTTGGGCTGCTTCAATCTCTCTATTGATGGTCATGCTGAATGTGTTAGGTTTGTGAAGAAATTCAATATACCCTTACTGGTTACAGGAGGTGGGGGATACACGAAAGAGAATGTTGCTCGGTGTTGGACCGTGGAAACTGGGGTTCTTCTTGATTCAGAACTTCCCAATGAGATCCCGGATAACGAGTATATCAAGTATTTTTCTCCAGACTGCTCGTTGAGGATTCCGAATGGGCATATAGAGAACCTAAATAGTAAATCATATCTTAGCACGATTAAAATACAAGTCTTGGAAAATCTCCGTTACATTCAACATGCTCCTAGTGTACAGATGCAAGAGGTTCCACCAGACTTCTATATTCCCGACTTTGATGAAGATGAGCAGAACCCTGATGAACGTCTAGATCAGAACACCCAAGACAGGCACATTCAGCGTGACGACGAGTATTACGAAGGGGACAATGATAACGATCACAACATGGATGATATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006325 GO:0006464 GO:0006476 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009987 GO:0010029 GO:0010187 GO:0016043 GO:0016569 GO:0016570 GO:0016575 GO:0019538 GO:0035601 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043565 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0048519 GO:0048580 GO:0048581 GO:0048831 GO:0050789 GO:0050793 GO:0051093 GO:0051239 GO:0051241 GO:0051276 GO:0065007 GO:0070932 GO:0071704 GO:0071840 GO:0097159 GO:0098732 GO:1900055 GO:1900140 GO:1901363 GO:1901564 GO:1990619 GO:2000024 GO:2000026

KEGG Pathways

Metabolic & Signaling

ko04110 ko04213 ko04330 ko04919 ko05016 ko05034 ko05165 ko05169 ko05200 ko05202 ko05203 ko05220 map04110 map04213 map04330 map04919 map05016 map05034 map05165 map05169 map05200 map05202 map05203 map05220

Pfam Domains

Protein Families

Hist_deacetyl

Protein Analysis

431

Amino Acids

49.24

Weight (kDa)

5.14

Isoelectric Point (pI)

32.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Hist_deacetyl	PF00850	24 - 314	1.6e-85	Histone deacetylase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007853)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G44680
fragaria_vesca	FvH4_5g27310 FvH4_5g27310 FvH4_5g27310 FvH4_5g27310
malus_domestica	MD11G1159400.v1.1
prunus_persica	Prupe.6G122500_v2.0.a1 Prupe.6G122500_v2.0.a1 Prupe.6G122500_v2.0.a1 Prupe.6G122500_v2.0.a1 Prupe.6G122500_v2.0.a1 Prupe.6G122500_v2.0.a1
pyrus_communis	pycom03g09310 pycom11g13010
rosa_chinensis	RchiOBHm_Chr7g0218461
rosa_laevigata	RLG00000002371
rosa_multiflora	Rmu_sc0001301.1_g000083
rosa_roxburghii	Rroxscaffold_3G00240940
rosa_rugosa	Rorug07G0177300 Rorug07G0177300 Rorug07G0177300
rosa_samantha	Rh7AG318700 Rh7CG335700
rosa_wichuraiana	Rw7G027090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	183
AccI	GTMKAC	1 cut(s)	54
AccII	CGCG	1 cut(s)	758
AciI	CCGC	2 cut(s)	83, 333
AclWI	GGATC	1 cut(s)	967
AcoI	YGGCCR	1 cut(s)	152
AcsI	RAATTY	4 cut(s)	144, 311, 321, 860
AfaI	GTAC	1 cut(s)	1128
AfiI	CCNNNNNNNGG	3 cut(s)	614, 676, 1221
AgsI	TTSAA	8 cut(s)	9, 311, 361, 703, 715, 814, 865, 1112
AluBI	AGCT	6 cut(s)	178, 197, 475, 545, 579, 699
AluI	AGCT	6 cut(s)	178, 197, 475, 545, 579, 699
Alw26I	GTCTC	2 cut(s)	734, 789
AlwI	GGATC	1 cut(s)	967
Ama87I	CYCGRG	2 cut(s)	492, 607
AoxI	GGCC	2 cut(s)	62, 152
ApeKI	GCWGC	2 cut(s)	347, 807
ApoI	RAATTY	4 cut(s)	144, 311, 321, 860
AseI	ATTAAT	1 cut(s)	387
Asp700I	GAANNNNTTC	1 cut(s)	860
AspLEI	GCGC	2 cut(s)	184, 758
AspS9I	GGNCC	2 cut(s)	62, 927
AsuC2I	CCSGG	4 cut(s)	608, 609, 753, 977
AsuHPI	GGTGA	3 cut(s)	539, 577, 629
AsuNHI	GCTAGC	1 cut(s)	695
AvaI	CYCGRG	2 cut(s)	492, 607
AvaII	GGWCC	1 cut(s)	927
BbvI	GCAGC	2 cut(s)	334, 794
BccI	CCATC	5 cut(s)	133, 524, 668, 674, 821
BcgI	CGANNNNNNTGC	2 cut(s)	770, 804
BciVI	GTATCC	1 cut(s)	890
BcnI	CCSGG	4 cut(s)	608, 609, 753, 977
BcoDI	GTCTC	2 cut(s)	734, 789
BfaI	CTAG	3 cut(s)	696, 1122, 1202
BfuI	GTATCC	1 cut(s)	890
BisI	GCNGC	2 cut(s)	348, 808
BlsI	GCNGC	2 cut(s)	349, 809
Bme1390I	CCNGG	4 cut(s)	608, 609, 753, 977
Bme18I	GGWCC	1 cut(s)	927
BmeT110I	CYCGRG	2 cut(s)	492, 607
BmgT120I	GGNCC	2 cut(s)	62, 927
BmiI	GGNNCC	2 cut(s)	778, 1143
BmrFI	CCNGG	4 cut(s)	608, 609, 753, 977
BmrI	ACTGGG	1 cut(s)	948
BmsI	GCATC	5 cut(s)	112, 334, 437, 529, 1122
BmtI	GCTAGC	1 cut(s)	699
BmuI	ACTGGG	1 cut(s)	948
BpmI	CTGGAG	3 cut(s)	752, 813, 990
BpuMI	CCSGG	4 cut(s)	608, 609, 753, 977
BsaAI	YACGTR	1 cut(s)	353
BsaBI	GATNNNNATC	2 cut(s)	519, 1269
BsaI	GGTCTC	1 cut(s)	789
BsaJI	CCNNGG	3 cut(s)	607, 729, 930
BsaWI	WCCGGW	2 cut(s)	169, 219
Bsc4I	CCNNNNNNNGG	3 cut(s)	614, 676, 1221
Bse118I	RCCGGY	2 cut(s)	87, 329
Bse1I	ACTGG	3 cut(s)	769, 882, 943
Bse3DI	GCAATG	1 cut(s)	378
Bse8I	GATNNNNATC	2 cut(s)	519, 1269
BseDI	CCNNGG	3 cut(s)	607, 729, 930
BseGI	GGATG	3 cut(s)	46, 685, 1288
BseJI	GATNNNNATC	2 cut(s)	519, 1269
BseLI	CCNNNNNNNGG	3 cut(s)	614, 676, 1221
BseMI	GCAATG	1 cut(s)	378
BseNI	ACTGG	3 cut(s)	769, 882, 943
BseXI	GCAGC	2 cut(s)	334, 794
BseYI	CCCAGC	1 cut(s)	237
BsgI	GTGCAG	2 cut(s)	333, 389
Bsh1236I	CGCG	1 cut(s)	758
BshFI	GGCC	2 cut(s)	64, 154
BsiHKCI	CYCGRG	2 cut(s)	492, 607
BsiSI	CCGG	7 cut(s)	88, 170, 220, 330, 608, 753, 977
BslFI	GGGAC	2 cut(s)	653, 1271
BslI	CCNNNNNNNGG	3 cut(s)	614, 676, 1221
BsmAI	GTCTC	2 cut(s)	734, 789
BsmFI	GGGAC	2 cut(s)	653, 1271
BsnI	GGCC	2 cut(s)	64, 154
Bso31I	GGTCTC	1 cut(s)	789
BsoBI	CYCGRG	2 cut(s)	492, 607
Bsp1407I	TGTACA	1 cut(s)	1126
Bsp143I	GATC	4 cut(s)	124, 972, 1204, 1270
BspACI	CCGC	2 cut(s)	83, 333
BspANI	GGCC	2 cut(s)	64, 154
BspFNI	CGCG	1 cut(s)	758
BspLI	GGNNCC	2 cut(s)	778, 1143
BspOI	GCTAGC	1 cut(s)	699
BspPI	GGATC	1 cut(s)	967
BspTNI	GGTCTC	1 cut(s)	789
BsrDI	GCAATG	1 cut(s)	378
BsrFI	RCCGGY	2 cut(s)	87, 329
BsrGI	TGTACA	1 cut(s)	1126
BsrI	ACTGG	3 cut(s)	769, 882, 943
BssAI	RCCGGY	2 cut(s)	87, 329
BssECI	CCNNGG	3 cut(s)	607, 729, 930
BssMI	GATC	4 cut(s)	124, 972, 1204, 1270
BssT1I	CCWWGG	1 cut(s)	729
Bst4CI	ACNGT	3 cut(s)	574, 800, 931
BstAUI	TGTACA	1 cut(s)	1126
BstBAI	YACGTR	1 cut(s)	353
BstC8I	GCNNGC	3 cut(s)	180, 331, 697
BstDEI	CTNAG	1 cut(s)	1067
BstDSI	CCRYGG	1 cut(s)	930
BstF5I	GGATG	3 cut(s)	46, 685, 1288
BstFNI	CGCG	1 cut(s)	758
BstHHI	GCGC	2 cut(s)	184, 758
BstKTI	GATC	4 cut(s)	127, 975, 1207, 1273
BstMAI	GTCTC	2 cut(s)	734, 789
BstMBI	GATC	4 cut(s)	124, 972, 1204, 1270
BstMWI	GCNNNNNNNGC	1 cut(s)	1231
BstNSI	RCATGY	1 cut(s)	1118
BstSCI	CCNGG	4 cut(s)	606, 607, 751, 975
BstUI	CGCG	1 cut(s)	758
BstV1I	GCAGC	2 cut(s)	334, 794
BstX2I	RGATCY	1 cut(s)	972
BstYI	RGATCY	1 cut(s)	972
BsuI	GTATCC	1 cut(s)	890
BsuRI	GGCC	2 cut(s)	64, 154
BtgI	CCRYGG	1 cut(s)	930
BtsCI	GGATG	3 cut(s)	46, 685, 1288
BtsIMutI	CAGTG	1 cut(s)	776
Cac8I	GCNNGC	3 cut(s)	180, 331, 697
CfoI	GCGC	2 cut(s)	184, 758
Cfr10I	RCCGGY	2 cut(s)	87, 329
Cfr13I	GGNCC	2 cut(s)	62, 927
Cfr9I	CCCGGG	1 cut(s)	607
CseI	GACGC	3 cut(s)	40, 109, 701
Csp6I	GTAC	1 cut(s)	1127
CviAII	CATG	6 cut(s)	410, 488, 524, 833, 1115, 1279
CviQI	GTAC	1 cut(s)	1127
DdeI	CTNAG	1 cut(s)	1067
DpnI	GATC	4 cut(s)	126, 974, 1206, 1272
DpnII	GATC	4 cut(s)	124, 972, 1204, 1270
EaeI	YGGCCR	1 cut(s)	152
EciI	GGCGGA	1 cut(s)	348
Eco130I	CCWWGG	1 cut(s)	729
Eco31I	GGTCTC	1 cut(s)	789
Eco47I	GGWCC	1 cut(s)	927
Eco88I	CYCGRG	2 cut(s)	492, 607
EcoT14I	CCWWGG	1 cut(s)	729
ErhI	CCWWGG	1 cut(s)	729
FaeI	CATG	6 cut(s)	413, 491, 527, 836, 1118, 1282
FaqI	GGGAC	2 cut(s)	653, 1271
FatI	CATG	6 cut(s)	409, 487, 523, 832, 1114, 1278
FauNDI	CATATG	1 cut(s)	121
FblI	GTMKAC	1 cut(s)	54
Fnu4HI	GCNGC	2 cut(s)	348, 808
FokI	GGATG	2 cut(s)	53, 692
Fsp4HI	GCNGC	2 cut(s)	348, 808
FspBI	CTAG	3 cut(s)	696, 1122, 1202
FspI	TGCGCA	1 cut(s)	183
GlaI	GCGC	2 cut(s)	183, 757
GluI	GCNGC	2 cut(s)	348, 808
GsaI	CCCAGC	1 cut(s)	241
GsuI	CTGGAG	3 cut(s)	752, 813, 990
HaeIII	GGCC	2 cut(s)	64, 154
HapII	CCGG	7 cut(s)	88, 170, 220, 330, 608, 753, 977
HgaI	GACGC	3 cut(s)	40, 109, 701
HhaI	GCGC	2 cut(s)	184, 758
Hin1II	CATG	6 cut(s)	413, 491, 527, 836, 1118, 1282
Hin6I	GCGC	2 cut(s)	182, 756
HinP1I	GCGC	2 cut(s)	182, 756
HindIII	AAGCTT	1 cut(s)	543
HinfI	GANTC	3 cut(s)	782, 953, 1024
HpaII	CCGG	7 cut(s)	88, 170, 220, 330, 608, 753, 977
HphI	GGTGA	3 cut(s)	539, 577, 629
Hpy166II	GTNNAC	3 cut(s)	55, 401, 1127
Hpy188I	TCNGA	3 cut(s)	958, 1029, 1209
Hpy188III	TCNNGA	7 cut(s)	250, 432, 715, 950, 1007, 1163, 1202
Hpy8I	GTNNAC	3 cut(s)	55, 401, 1127
Hpy99I	CGWCG	2 cut(s)	38, 1244
HpyAV	CCTTC	2 cut(s)	638, 1247
HpyCH4III	ACNGT	3 cut(s)	574, 800, 931
HpyCH4IV	ACGT	2 cut(s)	352, 1198
HpyCH4V	TGCA	4 cut(s)	350, 406, 520, 1135
HpyF10VI	GCNNNNNNNGC	1 cut(s)	1231
HpyF3I	CTNAG	1 cut(s)	1067
HpySE526I	ACGT	2 cut(s)	352, 1198
Hsp92II	CATG	6 cut(s)	413, 491, 527, 836, 1118, 1282
HspAI	GCGC	2 cut(s)	182, 756
KroI	GCCGGC	1 cut(s)	329
KroNI	GCCGGC	1 cut(s)	331
Kzo9I	GATC	4 cut(s)	124, 972, 1204, 1270
LmnI	GCTCC	4 cut(s)	175, 472, 776, 1123
Lsp1109I	GCAGC	2 cut(s)	334, 794
LweI	GCATC	5 cut(s)	112, 334, 437, 529, 1122
MaeI	CTAG	3 cut(s)	696, 1122, 1202
MaeII	ACGT	2 cut(s)	352, 1198
MaeIII	GTNAC	5 cut(s)	374, 440, 880, 1103, 1235
MalI	GATC	4 cut(s)	126, 974, 1206, 1272
MboI	GATC	4 cut(s)	124, 972, 1204, 1270
MboII	GAAGA	5 cut(s)	293, 551, 868, 938, 1187
MflI	RGATCY	1 cut(s)	972
MluCI	AATT	6 cut(s)	144, 185, 311, 321, 388, 860
MmeI	TCCRAC	1 cut(s)	905
MnlI	CCTC	5 cut(s)	125, 418, 881, 1014, 1132
MroNI	GCCGGC	1 cut(s)	329
MroXI	GAANNNNTTC	1 cut(s)	860
MseI	TTAA	2 cut(s)	387, 1077
MslI	CAYNNNNRTG	3 cut(s)	515, 525, 528
MspA1I	CMGCKG	1 cut(s)	197
MspI	CCGG	7 cut(s)	88, 170, 220, 330, 608, 753, 977
MspR9I	CCNGG	4 cut(s)	608, 609, 753, 977
MvnI	CGCG	1 cut(s)	758
MwoI	GCNNNNNNNGC	1 cut(s)	1231
NaeI	GCCGGC	1 cut(s)	331
NciI	CCSGG	4 cut(s)	608, 609, 753, 977
NdeI	CATATG	1 cut(s)	121
NdeII	GATC	4 cut(s)	124, 972, 1204, 1270
NgoMIV	GCCGGC	1 cut(s)	329
NheI	GCTAGC	1 cut(s)	695
NlaIII	CATG	6 cut(s)	413, 491, 527, 836, 1118, 1282
NlaIV	GGNNCC	2 cut(s)	778, 1143
NmuCI	GTSAC	2 cut(s)	374, 1235
NsbI	TGCGCA	1 cut(s)	183
NspI	RCATGY	1 cut(s)	1118
PcsI	WCGNNNNNNNCGW	1 cut(s)	1248
PdiI	GCCGGC	1 cut(s)	331
PdmI	GAANNNNTTC	1 cut(s)	860
PfeI	GAWTC	3 cut(s)	782, 953, 1024
PflFI	GACNNNGTC	2 cut(s)	203, 455
PfoI	TCCNGGA	1 cut(s)	975
PkrI	GCNGC	2 cut(s)	349, 809
Ppu21I	YACGTR	1 cut(s)	353
PshBI	ATTAAT	1 cut(s)	387
PspFI	CCCAGC	1 cut(s)	237
PspN4I	GGNNCC	2 cut(s)	778, 1143
PspPI	GGNCC	2 cut(s)	62, 927
PsuI	RGATCY	1 cut(s)	972
PsyI	GACNNNGTC	2 cut(s)	203, 455
PvuII	CAGCTG	1 cut(s)	197
RsaI	GTAC	1 cut(s)	1128
RsaNI	GTAC	1 cut(s)	1127
RseI	CAYNNNNRTG	3 cut(s)	515, 525, 528
SaqAI	TTAA	2 cut(s)	387, 1077
SatI	GCNGC	2 cut(s)	348, 808
Sau3AI	GATC	4 cut(s)	124, 972, 1204, 1270
Sau96I	GGNCC	2 cut(s)	62, 927
ScrFI	CCNGG	4 cut(s)	608, 609, 753, 977
SfaNI	GCATC	5 cut(s)	112, 334, 437, 529, 1122
SinI	GGWCC	1 cut(s)	927
SmaI	CCCGGG	1 cut(s)	609
SmiMI	CAYNNNNRTG	3 cut(s)	515, 525, 528
Sse9I	AATT	6 cut(s)	144, 185, 311, 321, 388, 860
SsiI	CCGC	2 cut(s)	83, 333
SspMI	CTAG	3 cut(s)	696, 1122, 1202
StyD4I	CCNGG	4 cut(s)	606, 607, 751, 975
StyI	CCWWGG	1 cut(s)	729
TaaI	ACNGT	3 cut(s)	574, 800, 931
TaiI	ACGT	2 cut(s)	355, 1201
TaqI	TCGA	2 cut(s)	207, 251
TasI	AATT	6 cut(s)	144, 185, 311, 321, 388, 860
TatI	WGTACW	1 cut(s)	1126
TfiI	GAWTC	3 cut(s)	782, 953, 1024
Tru1I	TTAA	2 cut(s)	387, 1077
Tru9I	TTAA	2 cut(s)	387, 1077
TscAI	CASTG	1 cut(s)	776
TseFI	GTSAC	2 cut(s)	374, 1235
TseI	GCWGC	2 cut(s)	347, 807
Tsp45I	GTSAC	2 cut(s)	374, 1235
TspDTI	ATGAA	4 cut(s)	92, 270, 1188, 1209
TspGWI	ACGGA	1 cut(s)	1091
TspMI	CCCGGG	1 cut(s)	607
TspRI	CASTG	1 cut(s)	776
Tth111I	GACNNNGTC	2 cut(s)	203, 455
VpaK11BI	GGWCC	1 cut(s)	927
VspI	ATTAAT	1 cut(s)	387
XapI	RAATTY	4 cut(s)	144, 311, 321, 860
XbaI	TCTAGA	1 cut(s)	1201
XceI	RCATGY	1 cut(s)	1118
XmaI	CCCGGG	1 cut(s)	607
XmiI	GTMKAC	1 cut(s)	54
XmnI	GAANNNNTTC	1 cut(s)	860
XspI	CTAG	3 cut(s)	696, 1122, 1202

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.