Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0015364

Physical Location & Seq

Genomic Coordinates Forward (+)

12668426 .. 12671086

Gene Structure 2661 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2661 bp

ATGCGTGGAAGCAAATGCAAGAGACTGGGGGAGAGCATGACCCTAAAGCCTGCCTTGAGGACCCTCACACAGTCCTACACGAAACTAGCTCCCAAGCAATACCACTTTGCCTATCATACCAATCATCTCGGCCGCCCTCACGCCATGCCCTTCACTCCGAAAACGGAGAGCTTGGTCTCGGAATCCAGCAATGCACACCAACTGTTCGACAAAACTCCGCAAAGAGACGTTTTAGAATCCAGTCACGTGCTTTTCGAGTACTTTCGGAATGACCGTAACCATGAAGCGCTTAACCTGTTTGTGGGTCTTTGGCGGTCTGGTTTACGGGCTAATGGGTCGATTCTGTCTTCGGTTCTTAAGGTTTGTGGATGTTTATCTGATCAAGTTGTCGGTAAGCTACTGCATTGTCAATGTGTAAAATCTGGGATTGTGGAGGACGTTAGTGTTGGGACCTCACTTGTTGATATGTATATGAAAACTGAAGGTGTTGGTGATGGGAGGAGAGTCTTTGATGAGATGGGGGATAGAAATGTAGTGTCATGGACCTCGTTAGTTGCCGGTTATTCAAGAAATGGATTGAATGACCGGGCATTGGAATTGTTTTCGGAGATGCAATTGGAAGGAATTAAGCCTAACCCGTATACATTTGCGACTGTTCTTGGAGTTTTGGCAGATGAAGGTATGGTTGAGAAGGGAAGACAGGTTCATACCATGGTGATAAAGAATGGTTTTGAATCAATTATGTCTGTGTGCAATTCTTTGATTAATATGTATCTAAAATCAGGGATTGTTAGGGATTCTAGAGCTGTTTTTCATGGTATGGAACGTAGGGATGCAGTTACTTGGAATAGTTTGATTGCAGGTTATGTGATGAATGGGTTCGATTTGGAAGCATTTGAAATGTTTAATCAGATGAGGCTTGCGGGCTTTAAGTTCACAGAAGCAATATTTGTTACTGTTATTAAGTTATGTGCTAACTTTAAAGAATTGGTATTTGCTAGACAGCTTCAGTGCCGGGTTGTAAAGACTGGGTTGGCATTTGACCGCAATATTCAAACAGCACTTATGGTAGCATACAGTAAGTGTGGTGAAATGGATGATGCTTATAAAATTTTCTCTATGATGCAAGGTGTTCAAAGTGTGGTAACGTGGACTACATTGATCACTGGGTACTTGCAGAATGGTGGAAAAGAGAGAGCATTGAAGTTATTCTGTCAAATGAGTCGAGAAGGTGTTAGACCAAACGATTTCACTTATTCTGCCATCCTTATGGTCTACCCTTCTTTTTTTATATTCCAAGTACATGCACAAGTCATTAAAACCAATTACGAGAAGTCACCTTCAGTAGGAACTTCACTCATAGATGCTTATGTTAAGATGGGAAATGTTCATGAAGCTGAAAAAGTGTTTCAAATAATTGAAGGGAAGGACATTGTGGCATGGTCAGCAATGCTTTCGGGATATGCTCAGATAGGAGATACCGAGGGAGCTGTTAAAACTTACCTCCAGTTGACAAGGGAGGGGGTCAGACCTAATATGTTTACCTTGTCAAGTGTCATCAATGCTTGTGCTGCGCCTACATCTGCAGTAAAGCAGGGGAAACAGTTTCATGCATGCTCAATCAAATTAAGGTTAAATAATACTTTATGCCTAAGTAGCGCTCTTGTCACCATGTATGCAAAGAAGGGGAATATTGAGAGTGCAAATGAAGTTTTCAAGAGGCAAGGAGAGCGAGACTTAGTTTCATGGAACTCAATTATCTCTGGATATGCTCAACATGGTAACGGGAAGAAGGTTCTTGAAGTATTTGAGGATATGCAAAGACAAAATTTGGAAATGGACGGTATAACATTCATTATTGTGATTTCTGCCTGTACTCATGCAGGCTTAGTAGATGAAGGTGAAAAATACTTCAATATTATGGTCCAAGATTACCATATTGATCCAACAATGGAGCACTATTCTTGTATGGTTGATCTATACAGCCGAGCAGGAAATCTTGAAAAGGCCATGGATATCATAAATGGAATGCCATTTGATGCAGGTGCAAATGTGTGGCGAGCTCTCTTAGGTGGTTGCCGTGTTCACCGCAATATAGAGATGGGAAAACTCGCTGCAGAAAAGCTCATTTCACTTCAGCCACATGATTCTGCTGCATATGTTCTGCTGTCCAATATCTATGCCGCAGCTGGAAACTGGCAAGAGAGAGCTAAAGTTAGGAAACTCATGGATGAGAGAAAAGTGAAAAAGCAACCCGGGTATAGCTGGATTGAGGTGAATAACAAGACGTACTCATTCTTGGCTGGTGACAATTCACATCCCATGTCAGACCTTATATATTCAAAGCTTGATGACTTAAATAACCGATTAACTGACATGGGTTATCAGCCGGACACGGATTATGTGCTTCATGATGTTGAAGAGGAACACAAAGCAGCCTTTCTTTCTCAACACAGTGAGAGATTGGCCATTGCTTTTGGATTGATTGCCACACATCCAGGGTTCACCATCCAAATTCTGAAAAATCTTAGAGTTTGTGGTGACTGTCACAATGTTATTAAGTTGATTTCATTGATTGAAGAGAGAGAAATTATCGTCAGGGATTCAAATCGGTTCCACCACTTTAAGGGTGGTTTATGCTCTTGTGGAGACTATTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

887

Amino Acids

99.51

Weight (kDa)

7.95

Isoelectric Point (pI)

33.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	176 - 224	6.5e-12	PPR repeat family
PPR_1	PF12854	176 - 205	5.7e-06	PPR repeat
PPR_3	PF13812	177 - 224	3.6e-06	Pentatricopeptide repeat domain
PPR	PF01535	179 - 209	2.1e-07	PPR repeat
PPR_2	PF13041	278 - 325	7.3e-06	PPR repeat family
PPR	PF01535	280 - 310	7.9e-07	PPR repeat
PPR_2	PF13041	380 - 423	8.8e-14	PPR repeat family
PPR_3	PF13812	380 - 426	7.1e-09	Pentatricopeptide repeat domain
PPR	PF01535	382 - 412	1.9e-06	PPR repeat
PPR_2	PF13041	476 - 524	1.8e-09	PPR repeat family
PPR_2	PF13041	579 - 626	1e-11	PPR repeat family
PPR	PF01535	581 - 610	3.6e-08	PPR repeat
E_motif	PF20431	696 - 758	4e-20	E motif
Eplus_motif	PF20430	763 - 790	1.5e-08	E+ motif
DYW_deaminase	PF14432	794 - 886	2e-42	DYW family of nucleic acid deaminases

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0015364)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G27610
fragaria_vesca	FvH4_3g24581
prunus_persica	Prupe.6G127000_v2.0.a1
pyrus_communis	pycom11g13360
rosa_chinensis	RchiOBHm_Chr5g0044141
rosa_laevigata	RLG00000034246
rosa_multiflora	Rmu_sc0000939.1_g000031 Rmu_sc0014980.1_g000002
rosa_roxburghii	Rroxscaffold_1G00036910
rosa_rugosa	Rorug05G0210800
rosa_samantha	Rh5AG295700 Rh5BG303500 Rh5CG330500 Rh5DG312300
rosa_wichuraiana	Rw5G027340 Rw5G027410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1107
AarI	CACCTGC	1 cut(s)	2033
Acc36I	ACCTGC	2 cut(s)	851, 2033
AccI	GTMKAC	2 cut(s)	641, 1275
AciI	CCGC	7 cut(s)	133, 218, 313, 923, 1045, 2089, 2184
AclWI	GGATC	1 cut(s)	1937
AcoI	YGGCCR	2 cut(s)	130, 2466
AcsI	RAATTY	3 cut(s)	1110, 1828, 2514
AcuI	CTGAAG	4 cut(s)	501, 992, 1326, 2120
AcvI	CACGTG	1 cut(s)	247
AfaI	GTAC	5 cut(s)	260, 1172, 1302, 1876, 2291
AfeI	AGCGCT	2 cut(s)	288, 1660
AfiI	CCNNNNNNNGG	4 cut(s)	301, 592, 1346, 2626
AflII	CTTAAG	1 cut(s)	356
AjnI	CCWGG	1 cut(s)	2497
AloI	GAACNNNNNNTCC	2 cut(s)	687, 719
Alw21I	GWGCWC	2 cut(s)	1959, 2065
Alw26I	GTCTC	5 cut(s)	16, 181, 219, 1728, 2643
AlwI	GGATC	1 cut(s)	1937
Ama87I	CYCGRG	1 cut(s)	2255
Aor51HI	AGCGCT	2 cut(s)	288, 1660
AoxI	GGCC	3 cut(s)	130, 2007, 2466
ApeKI	GCWGC	5 cut(s)	1571, 2114, 2153, 2186, 2435
ApoI	RAATTY	3 cut(s)	1110, 1828, 2514
AseI	ATTAAT	1 cut(s)	765
Asp700I	GAANNNNTTC	2 cut(s)	878, 1208
AspLEI	GCGC	3 cut(s)	289, 1576, 1661
AspS9I	GGNCC	4 cut(s)	60, 450, 543, 1924
AsuC2I	CCSGG	4 cut(s)	587, 1016, 2256, 2257
AvaI	CYCGRG	1 cut(s)	2255
AvaII	GGWCC	4 cut(s)	60, 450, 543, 1924
BalI	TGGCCA	1 cut(s)	2468
BanII	GRGCYC	1 cut(s)	2065
BbrPI	CACGTG	1 cut(s)	247
BbsI	GAAGAC	2 cut(s)	339, 703
Bbv12I	GWGCWC	2 cut(s)	1959, 2065
BbvI	GCAGC	5 cut(s)	1558, 2101, 2140, 2198, 2447
BccI	CCATC	6 cut(s)	488, 511, 1271, 1372, 2095, 2516
BceAI	ACGGC	1 cut(s)	2064
BcgI	CGANNNNNNTGC	2 cut(s)	1437, 1471
BciT130I	CCWGG	1 cut(s)	2499
BclI	TGATCA	2 cut(s)	379, 1161
BcnI	CCSGG	4 cut(s)	587, 1016, 2256, 2257
BcoDI	GTCTC	5 cut(s)	16, 181, 219, 1728, 2643
BfaI	CTAG	3 cut(s)	86, 801, 999
BfmI	CTRYAG	2 cut(s)	1584, 2115
BfoI	RGCGCY	2 cut(s)	290, 1662
BfrI	CTTAAG	1 cut(s)	356
BfuAI	ACCTGC	2 cut(s)	851, 2033
BisI	GCNGC	7 cut(s)	133, 1572, 2115, 2154, 2184, 2187, 2436
BlsI	GCNGC	7 cut(s)	134, 1573, 2116, 2155, 2185, 2188, 2437
BmcAI	AGTACT	1 cut(s)	260
Bme1390I	CCNGG	5 cut(s)	587, 1016, 2256, 2257, 2499
Bme18I	GGWCC	4 cut(s)	60, 450, 543, 1924
BmeT110I	CYCGRG	1 cut(s)	2255
BmgT120I	GGNCC	4 cut(s)	60, 450, 543, 1924
BmiI	GGNNCC	3 cut(s)	62, 451, 2615
BmrFI	CCNGG	5 cut(s)	587, 1016, 2256, 2257, 2499
BmrI	ACTGGG	3 cut(s)	35, 1038, 1176
BmsI	GCATC	6 cut(s)	600, 823, 1090, 1113, 1354, 2029
BmuI	ACTGGG	3 cut(s)	35, 1038, 1176
BpiI	GAAGAC	2 cut(s)	339, 703
BpmI	CTGGAG	1 cut(s)	1490
BpuEI	CTTGAG	1 cut(s)	76
BpuMI	CCSGG	4 cut(s)	587, 1016, 2256, 2257
BsaAI	YACGTR	1 cut(s)	247
BsaBI	GATNNNNATC	2 cut(s)	373, 2607
BsaI	GGTCTC	1 cut(s)	181
BsaJI	CCNNGG	5 cut(s)	711, 1482, 2010, 2255, 2498
Bsc4I	CCNNNNNNNGG	4 cut(s)	301, 592, 1346, 2626
Bse118I	RCCGGY	1 cut(s)	557
Bse1I	ACTGG	6 cut(s)	30, 240, 1033, 1171, 1507, 2201
Bse3DI	GCAATG	3 cut(s)	196, 1455, 2469
Bse8I	GATNNNNATC	2 cut(s)	373, 2607
BseBI	CCWGG	1 cut(s)	2499
BseDI	CCNNGG	5 cut(s)	711, 1482, 2010, 2255, 2498
BseGI	GGATG	8 cut(s)	374, 838, 1102, 1263, 2236, 2317, 2494, 2508
BseJI	GATNNNNATC	2 cut(s)	373, 2607
BseLI	CCNNNNNNNGG	4 cut(s)	301, 592, 1346, 2626
BseMI	GCAATG	3 cut(s)	196, 1455, 2469
BseMII	CTCAG	1 cut(s)	1481
BseNI	ACTGG	6 cut(s)	30, 240, 1033, 1171, 1507, 2201
BseRI	GAGGAG	1 cut(s)	514
BseX3I	CGGCCG	1 cut(s)	130
BseXI	GCAGC	5 cut(s)	1558, 2101, 2140, 2198, 2447
Bsh1285I	CGRYCG	1 cut(s)	133
BshFI	GGCC	3 cut(s)	132, 2009, 2468
BsiEI	CGRYCG	1 cut(s)	133
BsiHKAI	GWGCWC	2 cut(s)	1959, 2065
BsiHKCI	CYCGRG	1 cut(s)	2255
BsiSI	CCGG	5 cut(s)	558, 586, 1015, 2256, 2390
BslFI	GGGAC	1 cut(s)	463
BslI	CCNNNNNNNGG	4 cut(s)	301, 592, 1346, 2626
BsmAI	GTCTC	5 cut(s)	16, 181, 219, 1728, 2643
BsmBI	CGTCTC	1 cut(s)	219
BsmFI	GGGAC	1 cut(s)	463
BsmI	GAATGC	1 cut(s)	2034
BsnI	GGCC	3 cut(s)	132, 2009, 2468
Bso31I	GGTCTC	1 cut(s)	181
BsoBI	CYCGRG	1 cut(s)	2255
Bsp1286I	GDGCHC	2 cut(s)	1959, 2065
Bsp143I	GATC	4 cut(s)	379, 1161, 1942, 1975
Bsp19I	CCATGG	2 cut(s)	711, 2010
BspACI	CCGC	7 cut(s)	133, 218, 313, 923, 1045, 2089, 2184
BspANI	GGCC	3 cut(s)	132, 2009, 2468
BspCNI	CTCAG	1 cut(s)	1480
BspHI	TCATGA	2 cut(s)	1390, 2410
BspLI	GGNNCC	3 cut(s)	62, 451, 2615
BspMAI	CTGCAG	2 cut(s)	1588, 2119
BspMI	ACCTGC	2 cut(s)	851, 2033
BspPI	GGATC	1 cut(s)	1937
BspTI	CTTAAG	1 cut(s)	356
BspTNI	GGTCTC	1 cut(s)	181
BsrDI	GCAATG	3 cut(s)	196, 1455, 2469
BsrFI	RCCGGY	1 cut(s)	557
BsrI	ACTGG	6 cut(s)	30, 240, 1033, 1171, 1507, 2201
BssAI	RCCGGY	1 cut(s)	557
BssECI	CCNNGG	5 cut(s)	711, 1482, 2010, 2255, 2498
BssMI	GATC	4 cut(s)	379, 1161, 1942, 1975
BssNAI	GTATAC	1 cut(s)	642
BssT1I	CCWWGG	2 cut(s)	711, 2010
Bst1107I	GTATAC	1 cut(s)	642
Bst2UI	CCWGG	1 cut(s)	2499
Bst6I	CTCTTC	2 cut(s)	2415, 2574
BstAFI	CTTAAG	1 cut(s)	356
BstBAI	YACGTR	1 cut(s)	247
BstC8I	GCNNGC	6 cut(s)	51, 921, 925, 1615, 1885, 2061
BstDEI	CTNAG	6 cut(s)	1467, 1652, 1738, 1888, 2068, 2528
BstDSI	CCRYGG	2 cut(s)	711, 2010
BstENI	CCTNNNNNAGG	1 cut(s)	1344
BstF5I	GGATG	8 cut(s)	374, 838, 1102, 1263, 2236, 2317, 2494, 2508
BstH2I	RGCGCY	2 cut(s)	290, 1662
BstHHI	GCGC	3 cut(s)	289, 1576, 1661
BstKTI	GATC	4 cut(s)	382, 1164, 1945, 1978
BstMAI	GTCTC	5 cut(s)	16, 181, 219, 1728, 2643
BstMBI	GATC	4 cut(s)	379, 1161, 1942, 1975
BstMCI	CGRYCG	1 cut(s)	133
BstMWI	GCNNNNNNNGC	4 cut(s)	1445, 1571, 1656, 1729
BstNI	CCWGG	1 cut(s)	2499
BstNSI	RCATGY	2 cut(s)	1307, 1617
BstSCI	CCNGG	5 cut(s)	585, 1014, 2254, 2255, 2497
BstSFI	CTRYAG	2 cut(s)	1584, 2115
BstV1I	GCAGC	5 cut(s)	1558, 2101, 2140, 2198, 2447
BstV2I	GAAGAC	2 cut(s)	339, 703
BstXI	CCANNNNNNTGG	1 cut(s)	1270
BstZ17I	GTATAC	1 cut(s)	642
BstZI	CGGCCG	1 cut(s)	130
BsuRI	GGCC	3 cut(s)	132, 2009, 2468
BtgI	CCRYGG	2 cut(s)	711, 2010
BtsCI	GGATG	8 cut(s)	374, 838, 1102, 1263, 2236, 2317, 2494, 2508
BtsIMutI	CAGTG	3 cut(s)	1016, 1164, 2461
BveI	ACCTGC	2 cut(s)	851, 2033
Cac8I	GCNNGC	6 cut(s)	51, 921, 925, 1615, 1885, 2061
CciI	TCATGA	2 cut(s)	1390, 2410
CfoI	GCGC	3 cut(s)	289, 1576, 1661
Cfr10I	RCCGGY	1 cut(s)	557
Cfr13I	GGNCC	4 cut(s)	60, 450, 543, 1924
Cfr9I	CCCGGG	1 cut(s)	2255
Csp6I	GTAC	5 cut(s)	259, 1171, 1301, 1875, 2290
CviQI	GTAC	5 cut(s)	259, 1171, 1301, 1875, 2290
DdeI	CTNAG	6 cut(s)	1467, 1652, 1738, 1888, 2068, 2528
DpnI	GATC	4 cut(s)	381, 1163, 1944, 1977
DpnII	GATC	4 cut(s)	379, 1161, 1942, 1975
DraI	TTTAAA	1 cut(s)	982
EaeI	YGGCCR	2 cut(s)	130, 2466
EagI	CGGCCG	1 cut(s)	130
Eam1104I	CTCTTC	2 cut(s)	2415, 2574
EarI	CTCTTC	2 cut(s)	2415, 2574
Ecl136II	GAGCTC	1 cut(s)	2063
EclXI	CGGCCG	1 cut(s)	130
Eco130I	CCWWGG	2 cut(s)	711, 2010
Eco24I	GRGCYC	1 cut(s)	2065
Eco31I	GGTCTC	1 cut(s)	181
Eco32I	GATATC	1 cut(s)	2017
Eco47I	GGWCC	4 cut(s)	60, 450, 543, 1924
Eco47III	AGCGCT	2 cut(s)	288, 1660
Eco52I	CGGCCG	1 cut(s)	130
Eco53kI	GAGCTC	1 cut(s)	2063
Eco57I	CTGAAG	4 cut(s)	501, 992, 1326, 2120
Eco72I	CACGTG	1 cut(s)	247
Eco88I	CYCGRG	1 cut(s)	2255
EcoICRI	GAGCTC	1 cut(s)	2063
EcoNI	CCTNNNNNAGG	1 cut(s)	1344
EcoO109I	RGGNCCY	2 cut(s)	60, 450
EcoRII	CCWGG	1 cut(s)	2497
EcoRV	GATATC	1 cut(s)	2017
EcoT14I	CCWWGG	2 cut(s)	711, 2010
EcoT22I	ATGCAT	1 cut(s)	1615
EcoT38I	GRGCYC	1 cut(s)	2065
ErhI	CCWWGG	2 cut(s)	711, 2010
Esp3I	CGTCTC	1 cut(s)	219
FalI	AAGNNNNNCTT	2 cut(s)	38, 70
FaqI	GGGAC	1 cut(s)	463
FauI	CCCGC	1 cut(s)	916
FauNDI	CATATG	1 cut(s)	2158
FbaI	TGATCA	2 cut(s)	379, 1161
FblI	GTMKAC	2 cut(s)	641, 1275
Fnu4HI	GCNGC	7 cut(s)	133, 1572, 2115, 2154, 2184, 2187, 2436
FokI	GGATG	8 cut(s)	381, 845, 1109, 1250, 2243, 2304, 2481, 2495
FriOI	GRGCYC	1 cut(s)	2065
Fsp4HI	GCNGC	7 cut(s)	133, 1572, 2115, 2154, 2184, 2187, 2436
FspBI	CTAG	3 cut(s)	86, 801, 999
GlaI	GCGC	3 cut(s)	288, 1575, 1660
GluI	GCNGC	7 cut(s)	133, 1572, 2115, 2154, 2184, 2187, 2436
GsuI	CTGGAG	1 cut(s)	1490
HaeII	RGCGCY	2 cut(s)	290, 1662
HaeIII	GGCC	3 cut(s)	132, 2009, 2468
HapII	CCGG	5 cut(s)	558, 586, 1015, 2256, 2390
HhaI	GCGC	3 cut(s)	289, 1576, 1661
Hin6I	GCGC	3 cut(s)	287, 1574, 1659
HinP1I	GCGC	3 cut(s)	287, 1574, 1659
HincII	GTYRAC	1 cut(s)	1512
HindII	GTYRAC	1 cut(s)	1512
HindIII	AAGCTT	1 cut(s)	2345
HinfI	GANTC	9 cut(s)	182, 236, 340, 504, 734, 797, 1222, 2147, 2603
HpaII	CCGG	5 cut(s)	558, 586, 1015, 2256, 2390
Hpy166II	GTNNAC	9 cut(s)	323, 642, 936, 1152, 1276, 1512, 1542, 2086, 2505
Hpy8I	GTNNAC	9 cut(s)	323, 642, 936, 1152, 1276, 1512, 1542, 2086, 2505
HpyCH4IV	ACGT	6 cut(s)	228, 246, 438, 826, 1148, 2288
HpyF10VI	GCNNNNNNNGC	4 cut(s)	1445, 1571, 1656, 1729
HpyF3I	CTNAG	6 cut(s)	1467, 1652, 1738, 1888, 2068, 2528
HpySE526I	ACGT	6 cut(s)	228, 246, 438, 826, 1148, 2288
HspAI	GCGC	3 cut(s)	287, 1574, 1659
Ksp22I	TGATCA	2 cut(s)	379, 1161
Kzo9I	GATC	4 cut(s)	379, 1161, 1942, 1975
LmnI	GCTCC	3 cut(s)	94, 1487, 1954
Lsp1109I	GCAGC	5 cut(s)	1558, 2101, 2140, 2198, 2447
LweI	GCATC	6 cut(s)	600, 823, 1090, 1113, 1354, 2029
MaeI	CTAG	3 cut(s)	86, 801, 999
MaeII	ACGT	6 cut(s)	228, 246, 438, 826, 1148, 2288
MalI	GATC	4 cut(s)	381, 1163, 1944, 1977
MboI	GATC	4 cut(s)	379, 1161, 1942, 1975
MboII	GAAGA	5 cut(s)	339, 708, 1801, 2432, 2591
MfeI	CAATTG	1 cut(s)	614
MhlI	GDGCHC	2 cut(s)	1959, 2065
MlsI	TGGCCA	1 cut(s)	2468
MluNI	TGGCCA	1 cut(s)	2468
MlyI	GAGTC	2 cut(s)	513, 1231
MmeI	TCCRAC	1 cut(s)	1970
Mox20I	TGGCCA	1 cut(s)	2468
Mph1103I	ATGCAT	1 cut(s)	1615
MroXI	GAANNNNTTC	2 cut(s)	878, 1208
MscI	TGGCCA	1 cut(s)	2468
MslI	CAYNNNNRTG	2 cut(s)	1268, 1859
Msp20I	TGGCCA	1 cut(s)	2468
MspA1I	CMGCKG	1 cut(s)	2189
MspCI	CTTAAG	1 cut(s)	356
MspI	CCGG	5 cut(s)	558, 586, 1015, 2256, 2390
MspR9I	CCNGG	5 cut(s)	587, 1016, 2256, 2257, 2499
MunI	CAATTG	1 cut(s)	614
Mva1269I	GAATGC	1 cut(s)	2034
MvaI	CCWGG	1 cut(s)	2499
MwoI	GCNNNNNNNGC	4 cut(s)	1445, 1571, 1656, 1729
NciI	CCSGG	4 cut(s)	587, 1016, 2256, 2257
NcoI	CCATGG	2 cut(s)	711, 2010
NdeI	CATATG	1 cut(s)	2158
NdeII	GATC	4 cut(s)	379, 1161, 1942, 1975
NlaIV	GGNNCC	3 cut(s)	62, 451, 2615
NmeAIII	GCCGAG	2 cut(s)	108, 2012
NmuCI	GTSAC	6 cut(s)	242, 1335, 1666, 2306, 2540, 2546
NsiI	ATGCAT	1 cut(s)	1615
NspI	RCATGY	2 cut(s)	1307, 1617
PaeI	GCATGC	1 cut(s)	1617
PagI	TCATGA	2 cut(s)	1390, 2410
PaqCI	CACCTGC	1 cut(s)	2033
PcsI	WCGNNNNNNNCGW	2 cut(s)	252, 271
PctI	GAATGC	1 cut(s)	2034
PdmI	GAANNNNTTC	2 cut(s)	878, 1208
PfeI	GAWTC	7 cut(s)	182, 236, 340, 734, 797, 2147, 2603
PkrI	GCNGC	7 cut(s)	134, 1573, 2116, 2155, 2185, 2188, 2437
PleI	GAGTC	2 cut(s)	512, 1230
PmaCI	CACGTG	1 cut(s)	247
PmlI	CACGTG	1 cut(s)	247
PpsI	GAGTC	2 cut(s)	512, 1230
Ppu21I	YACGTR	1 cut(s)	247
PpuMI	RGGWCCY	2 cut(s)	60, 450
PshBI	ATTAAT	1 cut(s)	765
PsiI	TTATAA	1 cut(s)	1107
Psp124BI	GAGCTC	1 cut(s)	2065
Psp5II	RGGWCCY	2 cut(s)	60, 450
Psp6I	CCWGG	1 cut(s)	2497
PspCI	CACGTG	1 cut(s)	247
PspGI	CCWGG	1 cut(s)	2497
PspN4I	GGNNCC	3 cut(s)	62, 451, 2615
PspPI	GGNCC	4 cut(s)	60, 450, 543, 1924
PspPPI	RGGWCCY	2 cut(s)	60, 450
PstI	CTGCAG	2 cut(s)	1588, 2119
PvuII	CAGCTG	1 cut(s)	2189
RsaI	GTAC	5 cut(s)	260, 1172, 1302, 1876, 2291
RsaNI	GTAC	5 cut(s)	259, 1171, 1301, 1875, 2290
RseI	CAYNNNNRTG	2 cut(s)	1268, 1859
SacI	GAGCTC	1 cut(s)	2065
SatI	GCNGC	7 cut(s)	133, 1572, 2115, 2154, 2184, 2187, 2436
Sau3AI	GATC	4 cut(s)	379, 1161, 1942, 1975
Sau96I	GGNCC	4 cut(s)	60, 450, 543, 1924
ScaI	AGTACT	1 cut(s)	260
SchI	GAGTC	2 cut(s)	513, 1231
ScrFI	CCNGG	5 cut(s)	587, 1016, 2256, 2257, 2499
SduI	GDGCHC	2 cut(s)	1959, 2065
SfaNI	GCATC	6 cut(s)	600, 823, 1090, 1113, 1354, 2029
SfcI	CTRYAG	2 cut(s)	1584, 2115
SinI	GGWCC	4 cut(s)	60, 450, 543, 1924
SmaI	CCCGGG	1 cut(s)	2257
SmiMI	CAYNNNNRTG	2 cut(s)	1268, 1859
SmlI	CTYRAG	2 cut(s)	55, 356
SmoI	CTYRAG	2 cut(s)	55, 356
SphI	GCATGC	1 cut(s)	1617
SsiI	CCGC	7 cut(s)	133, 218, 313, 923, 1045, 2089, 2184
SspI	AATATT	4 cut(s)	948, 1051, 1693, 1918
SspMI	CTAG	3 cut(s)	86, 801, 999
SstI	GAGCTC	1 cut(s)	2065
StyD4I	CCNGG	5 cut(s)	585, 1014, 2254, 2255, 2497
StyI	CCWWGG	2 cut(s)	711, 2010
TaiI	ACGT	6 cut(s)	231, 249, 441, 829, 1151, 2291
TaqI	TCGA	5 cut(s)	207, 255, 338, 882, 1225
TatI	WGTACW	3 cut(s)	258, 1300, 1874
TauI	GCSGC	2 cut(s)	135, 2186
TfiI	GAWTC	7 cut(s)	182, 236, 340, 734, 797, 2147, 2603
TscAI	CASTG	3 cut(s)	1016, 1171, 2461
TseFI	GTSAC	6 cut(s)	242, 1335, 1666, 2306, 2540, 2546
TseI	GCWGC	5 cut(s)	1571, 2114, 2153, 2186, 2435
Tsp45I	GTSAC	6 cut(s)	242, 1335, 1666, 2306, 2540, 2546
TspGWI	ACGGA	2 cut(s)	179, 2411
TspMI	CCCGGG	1 cut(s)	2255
TspRI	CASTG	3 cut(s)	1016, 1171, 2461
Vha464I	CTTAAG	1 cut(s)	356
VpaK11BI	GGWCC	4 cut(s)	60, 450, 543, 1924
VspI	ATTAAT	1 cut(s)	765
XagI	CCTNNNNNAGG	1 cut(s)	1344
XapI	RAATTY	3 cut(s)	1110, 1828, 2514
XbaI	TCTAGA	1 cut(s)	800
XceI	RCATGY	2 cut(s)	1307, 1617
XcmI	CCANNNNNNNNNTGG	1 cut(s)	2627
XmaI	CCCGGG	1 cut(s)	2255
XmiI	GTMKAC	2 cut(s)	641, 1275
XmnI	GAANNNNTTC	2 cut(s)	878, 1208
XspI	CTAG	3 cut(s)	86, 801, 999
ZrmI	AGTACT	1 cut(s)	260
Zsp2I	ATGCAT	1 cut(s)	1615

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.