pycom11g13590

isoform X1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
OG0003539
Physical Location & Seq
Reverse (-)
13125936 .. 13126271
336 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom11g13590.1

Sequence Viewer

Length: 273 bp
ATGTTTGATTGGAACGACGAGGAGCTTGCAAACATAATATGCGATGCGGCAGAATGGAAACAAGAATCTCACACCATCAAGCCTACCGAACAGAAGACCTATGGGTCCAAAATTGACTTGCAGGACAGAAAGTTGGAAAGCAGTTCTAATTTTGACAAGAGTGAAAGAATTTCTACCTCTGAATTTGGAATGGACTCGTGGCTTGATTTATCATTATCTAATGTTGGAACAAGTGAACAACATTGCATAGCTGAGGGAATCCAACTTAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

91

Amino Acids

10.27

Weight (kDa)

4.38

Isoelectric Point (pI)

46.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 103
AciI CCGC 1 cut(s) 47
AcsI RAATTY 2 cut(s) 168, 182
AluBI AGCT 2 cut(s) 25, 251
AluI AGCT 2 cut(s) 25, 251
ApoI RAATTY 2 cut(s) 168, 182
AspS9I GGNCC 1 cut(s) 105
AvaII GGWCC 1 cut(s) 105
BauI CACGAG 1 cut(s) 196
BbsI GAAGAC 1 cut(s) 101
BbvCI CCTCAGC 1 cut(s) 252
BccI CCATC 1 cut(s) 83
BcgI CGANNNNNNTGC 2 cut(s) 8, 42
BisI GCNGC 1 cut(s) 48
BlsI GCNGC 1 cut(s) 49
Bme18I GGWCC 1 cut(s) 105
BmgT120I GGNCC 1 cut(s) 105
BmiI GGNNCC 1 cut(s) 106
BmsI GCATC 1 cut(s) 34
BpiI GAAGAC 1 cut(s) 101
Bpu10I CCTNAGC 1 cut(s) 252
Bse3DI GCAATG 1 cut(s) 241
BseMI GCAATG 1 cut(s) 241
BseMII CTCAG 1 cut(s) 243
BseRI GAGGAG 1 cut(s) 35
BspACI CCGC 1 cut(s) 47
BspCNI CTCAG 1 cut(s) 244
BspLI GGNNCC 1 cut(s) 106
BsrDI GCAATG 1 cut(s) 241
BssSI CACGAG 1 cut(s) 196
Bst2BI CACGAG 1 cut(s) 196
BstC8I GCNNGC 1 cut(s) 27
BstDEI CTNAG 1 cut(s) 252
BstV2I GAAGAC 1 cut(s) 101
BtgZI GCGATG 1 cut(s) 57
Cac8I GCNNGC 1 cut(s) 27
Cfr13I GGNCC 1 cut(s) 105
CviJI RGCY 4 cut(s) 25, 82, 202, 251
CviKI_1 RGCY 4 cut(s) 25, 82, 202, 251
DdeI CTNAG 1 cut(s) 252
DrdI GACNNNNNNGTC 1 cut(s) 103
DseDI GACNNNNNNGTC 1 cut(s) 103
Eco47I GGWCC 1 cut(s) 105
FaiI YATR 4 cut(s) 35, 40, 102, 248
Fnu4HI GCNGC 1 cut(s) 48
Fsp4HI GCNGC 1 cut(s) 48
GluI GCNGC 1 cut(s) 48
HinfI GANTC 3 cut(s) 65, 194, 258
Hpy166II GTNNAC 1 cut(s) 236
Hpy188I TCNGA 1 cut(s) 181
Hpy8I GTNNAC 1 cut(s) 236
Hpy99I CGWCG 1 cut(s) 20
HpyCH4V TGCA 3 cut(s) 29, 121, 246
HpyF3I CTNAG 1 cut(s) 252
LmnI GCTCC 1 cut(s) 22
LpnPI CCDG 1 cut(s) 107
LweI GCATC 1 cut(s) 34
MboII GAAGA 1 cut(s) 106
MluCI AATT 5 cut(s) 111, 148, 168, 182, 268
MlyI GAGTC 1 cut(s) 188
MmeI TCCRAC 2 cut(s) 114, 205
MnlI CCTC 3 cut(s) 13, 187, 247
MseI TTAA 2 cut(s) 267, 271
NlaIV GGNNCC 1 cut(s) 106
PacI TTAATTAA 1 cut(s) 271
PfeI GAWTC 2 cut(s) 65, 258
PkrI GCNGC 1 cut(s) 49
PleI GAGTC 1 cut(s) 188
PpsI GAGTC 1 cut(s) 188
PspN4I GGNNCC 1 cut(s) 106
PspPI GGNCC 1 cut(s) 105
SaqAI TTAA 2 cut(s) 267, 271
SatI GCNGC 1 cut(s) 48
Sau96I GGNCC 1 cut(s) 105
SchI GAGTC 1 cut(s) 188
SetI ASST 4 cut(s) 27, 101, 179, 253
SfaNI GCATC 1 cut(s) 34
SinI GGWCC 1 cut(s) 105
Sse9I AATT 5 cut(s) 111, 148, 168, 182, 268
SsiI CCGC 1 cut(s) 47
TasI AATT 5 cut(s) 111, 148, 168, 182, 268
TauI GCSGC 1 cut(s) 50
TfiI GAWTC 2 cut(s) 65, 258
Tru1I TTAA 2 cut(s) 267, 271
Tru9I TTAA 2 cut(s) 267, 271
VpaK11BI GGWCC 1 cut(s) 105
XapI RAATTY 2 cut(s) 168, 182
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.