Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0003539

Physical Location & Seq

Genomic Coordinates Forward (+)

9342653 .. 9353716

Gene Structure 11064 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG050800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1527 bp

ATGGGTACGGAAACCCCCGACAACTTAACTGATAATAATAATTTAGCTGAGGCAAATCAACTTGACAAAGCTGCTGAACTTTTTCAAAATTCCAATGAAGCTAAAGAACAATTTGTTGACTATGGGTGGGCTAATATAGGAAGTTTTGATGATCTTGATCAAATTTTCAGCAATGATGACACTATATTTAGCCAAGTAAGTCTTGGAAATGTGGATGAGCTGTGGTCTTCTAAAGATGTGACTAATAGTCCAATCAAAGCATTTCCTGTGACTTCAGACTCACCAAGTTCCGGGTCAGGAGCACTGAGGAATGTGTCAGAGCATGCGGAAATTAAAACAGAAATTGTGCAGCAAGATGAGCGGGCAATTTCCCCTGGCTATGGGAAGACAGATTTTTCTGCATCTCATGGTCTACAGAATGCCCCTGCAACTCTTGATCATGTAGAATATGCTGTGGGAAAAAGTAAGCCCACAGAAAAGGAGCAGACAGGGTCGGACTTGGGCAACAGCACTGTAACAAATTCTTACCAGGCTGCTGTAAATTCTTCTTCGTCAACTGAAATTCCTGACAAGGTTTCCAGGCAGAGAAAATTTTTGAGGTCTCGTAAAAAGTTGGAGGACAAAAATGAGGGCAAATCATTGCAAGATTTTTATGGTAACTGGTCTTCAACAAGAAACCCTTCTGGACAATTCGATAACCAGTTGCCAAGCCTTATGGTTCAATCTTCTCCCACTTCAGTTCTTGGTCACAAGAGACAGCTTCAAGGACCTGAGTCTTTTCCATACCAGCCTGTGTCTAATCAATTTGTGTCTCAGACTATGTATGGGACTCTCACTAATGCATGCCAGGCTACACCGGTGCTTTCTCACACTCAGCCTGGGCAGATTAAGCATCAAAATTTTCTTTCTGGTTCAGACATTTCTCCGGGTAGTGCTAGAAACAAGTCAGCGGATACTTGTGCCAAGCCTCTAACTATGACTACTCAGGAAAAAATTGAAAAGTTAAGAAGGCGGCAACAACTGCAGGCAATGCTTGCTATTAGAAAACAACAGCAACAATTTAGCCATCAAGTCTCATGCACCAATCAGCCTACCACACAAAAGTGTCCCCAAGAAAATCAAATTCAGCACTCTGAGAGAGCTGATCTGGAAGTTGAAGATTTAAGCACTTTTCCTTCTCTGGACCCAAATTCACCCATAGAACAAGATGATTCAAATACAGTTTCTGCAGCAGTTGAATATTACTCAGCGGAGGACACAATACTCTACAGGCTTCAAGATATTATAGCAAAGTTGGACATCAAAACGAGACTTTGCATACGGGATAGCTTGTTGCGGTTAGCTCAAAGTGCAGTGCAAAGGCATCATACAAGTGATACTAACAGTTCCAACAGAAACAGCAAGGATGAGCCTGAAATTGTTGCAAAGGAGGAAATCGGCGGTTGTAACAGGTTTATAAGCTATCCCAGTTCTTGTATATATGCTTTATTTTCATTGGAGCGGAGGTGGTTATCCCTTCTATGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

508

Amino Acids

56.4

Weight (kDa)

5.29

Isoelectric Point (pI)

53.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003539)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G54500 AT3G54500 AT3G54500 AT3G54500 AT3G54500 AT3G54500 AT3G54500 AT3G54500
fragaria_vesca	FvH4_7g02700 FvH4_7g02700 FvH4_7g02700 FvH4_7g02700 FvH4_7g02700 FvH4_7g02700 FvH4_7g02700 FvH4_7g02700
malus_domestica	MD02G1290900.v1.1 MD07G1036600.v1.1
prunus_persica	Prupe.2G032000_v2.0.a1 Prupe.2G032000_v2.0.a1 Prupe.2G032000_v2.0.a1 Prupe.2G032000_v2.0.a1
pyrus_communis	pycom02g24590 pycom07g02520 pycom11g13590
rosa_chinensis	RchiOBHm_Chr1g0321761
rosa_laevigata	RLG00000030406
rosa_multiflora	Rmu_sc0003410.1_g000034 Rmu_sc0003909.1_g000003
rosa_rugosa	Rorug01G0034100
rosa_samantha	Rh1AG046700 Rh1BG045200 Rh1CG050800 Rh1DG055100
rosa_wichuraiana	Rw1G004190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1457
AccBSI	CCGCTC	2 cut(s)	361, 1501
AccI	GTMKAC	1 cut(s)	412
AciI	CCGC	8 cut(s)	326, 361, 950, 1012, 1250, 1336, 1440, 1501
AcsI	RAATTY	9 cut(s)	88, 162, 520, 541, 561, 590, 898, 1122, 1189
AcuI	CTGAAG	2 cut(s)	258, 720
AfaI	GTAC	1 cut(s)	7
AfiI	CCNNNNNNNGG	2 cut(s)	290, 380
AgeI	ACCGGT	1 cut(s)	856
AgsI	TTSAA	9 cut(s)	86, 669, 722, 764, 998, 1157, 1215, 1238, 1277
AhdI	GACNNNNNGTC	1 cut(s)	246
AjnI	CCWGG	5 cut(s)	373, 528, 578, 846, 877
AleI	CACNNNNGTG	1 cut(s)	1102
AluBI	AGCT	9 cut(s)	47, 71, 101, 220, 760, 1142, 1329, 1343, 1461
AluI	AGCT	9 cut(s)	47, 71, 101, 220, 760, 1142, 1329, 1343, 1461
Alw21I	GWGCWC	1 cut(s)	304
Alw26I	GTCTC	5 cut(s)	606, 748, 816, 1078, 1303
AlwNI	CAGNNNCTG	1 cut(s)	1226
ApeKI	GCWGC	4 cut(s)	71, 349, 533, 1229
ApoI	RAATTY	9 cut(s)	88, 162, 520, 541, 561, 590, 898, 1122, 1189
AsiGI	ACCGGT	1 cut(s)	856
Asp700I	GAANNNNTTC	2 cut(s)	81, 679
AspS9I	GGNCC	2 cut(s)	767, 1183
AsuC2I	CCSGG	2 cut(s)	292, 927
AsuHPI	GGTGA	2 cut(s)	273, 1185
AvaII	GGWCC	2 cut(s)	767, 1183
BarI	GAAGNNNNNNTAC	2 cut(s)	649, 681
BbsI	GAAGAC	3 cut(s)	219, 392, 657
Bbv12I	GWGCWC	1 cut(s)	304
BbvCI	CCTCAGC	1 cut(s)	48
BbvI	GCAGC	4 cut(s)	58, 361, 520, 1241
BccI	CCATC	1 cut(s)	1074
BciT130I	CCWGG	5 cut(s)	375, 530, 580, 848, 879
BciVI	GTATCC	1 cut(s)	946
BclI	TGATCA	2 cut(s)	157, 436
BcnI	CCSGG	2 cut(s)	292, 927
BcoDI	GTCTC	5 cut(s)	606, 748, 816, 1078, 1303
BfaI	CTAG	1 cut(s)	936
BfmI	CTRYAG	4 cut(s)	413, 1022, 1227, 1267
BfuI	GTATCC	1 cut(s)	946
BisI	GCNGC	5 cut(s)	72, 350, 534, 1013, 1230
BlsI	GCNGC	5 cut(s)	73, 351, 535, 1014, 1231
Bme1390I	CCNGG	7 cut(s)	292, 375, 530, 580, 848, 879, 927
Bme18I	GGWCC	2 cut(s)	767, 1183
BmeRI	GACNNNNNGTC	1 cut(s)	246
BmgT120I	GGNCC	2 cut(s)	767, 1183
BmiI	GGNNCC	1 cut(s)	1185
BmrFI	CCNGG	7 cut(s)	292, 375, 530, 580, 848, 879, 927
BmrI	ACTGGG	1 cut(s)	1461
BmsI	GCATC	3 cut(s)	410, 901, 1372
BmuI	ACTGGG	1 cut(s)	1461
BoxI	GACNNNNGTC	1 cut(s)	772
BpiI	GAAGAC	3 cut(s)	219, 392, 657
Bpu10I	CCTNAGC	1 cut(s)	48
BpuMI	CCSGG	2 cut(s)	292, 927
BsaBI	GATNNNNATC	1 cut(s)	156
BsaI	GGTCTC	1 cut(s)	606
BsaJI	CCNNGG	2 cut(s)	373, 878
BsaWI	WCCGGW	1 cut(s)	856
BsaXI	ACNNNNNCTCC	2 cut(s)	1490, 1520
Bsc4I	CCNNNNNNNGG	2 cut(s)	290, 380
Bse118I	RCCGGY	1 cut(s)	856
Bse1I	ACTGG	3 cut(s)	665, 700, 1467
Bse3DI	GCAATG	3 cut(s)	178, 638, 1035
Bse8I	GATNNNNATC	1 cut(s)	156
BseBI	CCWGG	5 cut(s)	375, 530, 580, 848, 879
BseDI	CCNNGG	2 cut(s)	373, 878
BseGI	GGATG	2 cut(s)	220, 1411
BseJI	GATNNNNATC	1 cut(s)	156
BseLI	CCNNNNNNNGG	2 cut(s)	290, 380
BseMI	GCAATG	3 cut(s)	178, 638, 1035
BseMII	CTCAG	8 cut(s)	39, 296, 762, 827, 887, 998, 1125, 1260
BseNI	ACTGG	3 cut(s)	665, 700, 1467
BseXI	GCAGC	4 cut(s)	58, 361, 520, 1241
BsgI	GTGCAG	2 cut(s)	368, 1371
BshTI	ACCGGT	1 cut(s)	856
BsiHKAI	GWGCWC	1 cut(s)	304
BsiSI	CCGG	3 cut(s)	291, 857, 926
BslFI	GGGAC	2 cut(s)	841, 1092
BslI	CCNNNNNNNGG	2 cut(s)	290, 380
BsmAI	GTCTC	5 cut(s)	606, 748, 816, 1078, 1303
BsmFI	GGGAC	2 cut(s)	841, 1092
BsmI	GAATGC	1 cut(s)	424
Bso31I	GGTCTC	1 cut(s)	606
Bsp1286I	GDGCHC	1 cut(s)	304
Bsp143I	GATC	4 cut(s)	151, 157, 436, 1144
BspACI	CCGC	8 cut(s)	326, 361, 950, 1012, 1250, 1336, 1440, 1501
BspCNI	CTCAG	8 cut(s)	40, 297, 763, 826, 886, 997, 1126, 1259
BspLI	GGNNCC	1 cut(s)	1185
BspMAI	CTGCAG	2 cut(s)	1026, 1231
BspTNI	GGTCTC	1 cut(s)	606
BsrBI	CCGCTC	2 cut(s)	361, 1501
BsrDI	GCAATG	3 cut(s)	178, 638, 1035
BsrFI	RCCGGY	1 cut(s)	856
BsrI	ACTGG	3 cut(s)	665, 700, 1467
BssAI	RCCGGY	1 cut(s)	856
BssECI	CCNNGG	2 cut(s)	373, 878
BssMI	GATC	4 cut(s)	151, 157, 436, 1144
Bst2UI	CCWGG	5 cut(s)	375, 530, 580, 848, 879
Bst4CI	ACNGT	3 cut(s)	514, 1222, 1385
BstAPI	GCANNNNNTGC	3 cut(s)	1021, 1030, 1034
BstC8I	GCNNGC	5 cut(s)	324, 363, 844, 1026, 1035
BstDEI	CTNAG	8 cut(s)	48, 305, 771, 813, 873, 984, 1134, 1246
BstF5I	GGATG	2 cut(s)	220, 1411
BstKTI	GATC	4 cut(s)	154, 160, 439, 1147
BstMAI	GTCTC	5 cut(s)	606, 748, 816, 1078, 1303
BstMBI	GATC	4 cut(s)	151, 157, 436, 1144
BstMWI	GCNNNNNNNGC	7 cut(s)	358, 848, 889, 1021, 1030, 1034, 1349
BstNI	CCWGG	5 cut(s)	375, 530, 580, 848, 879
BstNSI	RCATGY	2 cut(s)	326, 846
BstPAI	GACNNNNGTC	1 cut(s)	772
BstSCI	CCNGG	7 cut(s)	290, 373, 528, 578, 846, 877, 925
BstSFI	CTRYAG	4 cut(s)	413, 1022, 1227, 1267
BstV1I	GCAGC	4 cut(s)	58, 361, 520, 1241
BstV2I	GAAGAC	3 cut(s)	219, 392, 657
BsuI	GTATCC	1 cut(s)	946
BtsCI	GGATG	2 cut(s)	220, 1411
BtsI	GCAGTG	1 cut(s)	1359
BtsIMutI	CAGTG	3 cut(s)	302, 510, 1359
Cac8I	GCNNGC	5 cut(s)	324, 363, 844, 1026, 1035
CaiI	CAGNNNCTG	1 cut(s)	1226
Cfr10I	RCCGGY	1 cut(s)	856
Cfr13I	GGNCC	2 cut(s)	767, 1183
Csp6I	GTAC	1 cut(s)	6
CspAI	ACCGGT	1 cut(s)	856
CviAII	CATG	5 cut(s)	323, 407, 440, 843, 1077
CviQI	GTAC	1 cut(s)	6
DdeI	CTNAG	8 cut(s)	48, 305, 771, 813, 873, 984, 1134, 1246
DpnI	GATC	4 cut(s)	153, 159, 438, 1146
DpnII	GATC	4 cut(s)	151, 157, 436, 1144
DriI	GACNNNNNGTC	1 cut(s)	246
Eam1105I	GACNNNNNGTC	1 cut(s)	246
Eco31I	GGTCTC	1 cut(s)	606
Eco47I	GGWCC	2 cut(s)	767, 1183
Eco57I	CTGAAG	2 cut(s)	258, 720
EcoO109I	RGGNCCY	1 cut(s)	767
EcoRII	CCWGG	5 cut(s)	373, 528, 578, 846, 877
EcoT22I	ATGCAT	1 cut(s)	844
FaeI	CATG	5 cut(s)	326, 410, 443, 846, 1080
FalI	AAGNNNNNCTT	4 cut(s)	186, 218, 664, 696
FaqI	GGGAC	2 cut(s)	841, 1092
FatI	CATG	5 cut(s)	322, 406, 439, 842, 1076
FauI	CCCGC	1 cut(s)	354
FbaI	TGATCA	2 cut(s)	157, 436
FblI	GTMKAC	1 cut(s)	412
Fnu4HI	GCNGC	5 cut(s)	72, 350, 534, 1013, 1230
FokI	GGATG	2 cut(s)	227, 1418
Fsp4HI	GCNGC	5 cut(s)	72, 350, 534, 1013, 1230
FspBI	CTAG	1 cut(s)	936
GluI	GCNGC	5 cut(s)	72, 350, 534, 1013, 1230
HapII	CCGG	3 cut(s)	291, 857, 926
Hin1II	CATG	5 cut(s)	326, 410, 443, 846, 1080
HincII	GTYRAC	2 cut(s)	118, 555
HindII	GTYRAC	2 cut(s)	118, 555
HinfI	GANTC	4 cut(s)	278, 773, 829, 1211
HpaII	CCGG	3 cut(s)	291, 857, 926
HphI	GGTGA	2 cut(s)	273, 1185
Hpy166II	GTNNAC	3 cut(s)	118, 413, 555
Hpy188I	TCNGA	6 cut(s)	277, 319, 496, 816, 916, 1135
Hpy188III	TCNNGA	9 cut(s)	155, 297, 434, 566, 684, 986, 1148, 1181, 1277
Hpy8I	GTNNAC	3 cut(s)	118, 413, 555
HpyAV	CCTTC	4 cut(s)	690, 1002, 1185, 1526
HpyCH4III	ACNGT	3 cut(s)	514, 1222, 1385
HpyF10VI	GCNNNNNNNGC	7 cut(s)	358, 848, 889, 1021, 1030, 1034, 1349
HpyF3I	CTNAG	8 cut(s)	48, 305, 771, 813, 873, 984, 1134, 1246
Hsp92II	CATG	5 cut(s)	326, 410, 443, 846, 1080
Ksp22I	TGATCA	2 cut(s)	157, 436
Kzo9I	GATC	4 cut(s)	151, 157, 436, 1144
LmnI	GCTCC	3 cut(s)	299, 481, 1498
Lsp1109I	GCAGC	4 cut(s)	58, 361, 520, 1241
LweI	GCATC	3 cut(s)	410, 901, 1372
MaeI	CTAG	1 cut(s)	936
MaeIII	GTNAC	6 cut(s)	238, 268, 514, 656, 746, 1445
MalI	GATC	4 cut(s)	153, 159, 438, 1146
MbiI	CCGCTC	2 cut(s)	361, 1501
MboI	GATC	4 cut(s)	151, 157, 436, 1144
MboII	GAAGA	7 cut(s)	219, 397, 537, 540, 657, 717, 1169
MhlI	GDGCHC	1 cut(s)	304
MlyI	GAGTC	3 cut(s)	272, 782, 823
MmeI	TCCRAC	4 cut(s)	474, 594, 1275, 1413
MnlI	CCTC	9 cut(s)	43, 300, 591, 610, 622, 978, 1246, 1423, 1497
Mph1103I	ATGCAT	1 cut(s)	844
MroXI	GAANNNNTTC	2 cut(s)	81, 679
MseI	TTAA	5 cut(s)	26, 333, 888, 1004, 1163
MslI	CAYNNNNRTG	2 cut(s)	1102, 1371
MspA1I	CMGCKG	2 cut(s)	950, 1250
MspI	CCGG	3 cut(s)	291, 857, 926
MspR9I	CCNGG	7 cut(s)	292, 375, 530, 580, 848, 879, 927
Mva1269I	GAATGC	1 cut(s)	424
MvaI	CCWGG	5 cut(s)	375, 530, 580, 848, 879
MwoI	GCNNNNNNNGC	7 cut(s)	358, 848, 889, 1021, 1030, 1034, 1349
NciI	CCSGG	2 cut(s)	292, 927
NdeII	GATC	4 cut(s)	151, 157, 436, 1144
NlaIII	CATG	5 cut(s)	326, 410, 443, 846, 1080
NlaIV	GGNNCC	1 cut(s)	1185
NmuCI	GTSAC	3 cut(s)	238, 268, 746
NsiI	ATGCAT	1 cut(s)	844
NspI	RCATGY	2 cut(s)	326, 846
OliI	CACNNNNGTG	1 cut(s)	1102
PaeI	GCATGC	2 cut(s)	326, 846
PctI	GAATGC	1 cut(s)	424
PdmI	GAANNNNTTC	2 cut(s)	81, 679
PfeI	GAWTC	1 cut(s)	1211
PflFI	GACNNNGTC	1 cut(s)	490
PinAI	ACCGGT	1 cut(s)	856
PkrI	GCNGC	5 cut(s)	73, 351, 535, 1014, 1231
PleI	GAGTC	3 cut(s)	272, 781, 823
PpsI	GAGTC	3 cut(s)	272, 781, 823
PpuMI	RGGWCCY	1 cut(s)	767
PshAI	GACNNNNGTC	1 cut(s)	772
PsiI	TTATAA	1 cut(s)	1457
Psp5II	RGGWCCY	1 cut(s)	767
Psp6I	CCWGG	5 cut(s)	373, 528, 578, 846, 877
PspGI	CCWGG	5 cut(s)	373, 528, 578, 846, 877
PspN4I	GGNNCC	1 cut(s)	1185
PspPI	GGNCC	2 cut(s)	767, 1183
PspPPI	RGGWCCY	1 cut(s)	767
PstI	CTGCAG	2 cut(s)	1026, 1231
PstNI	CAGNNNCTG	1 cut(s)	1226
PsyI	GACNNNGTC	1 cut(s)	490
RsaI	GTAC	1 cut(s)	7
RsaNI	GTAC	1 cut(s)	6
RseI	CAYNNNNRTG	2 cut(s)	1102, 1371
SaqAI	TTAA	5 cut(s)	26, 333, 888, 1004, 1163
SatI	GCNGC	5 cut(s)	72, 350, 534, 1013, 1230
Sau3AI	GATC	4 cut(s)	151, 157, 436, 1144
Sau96I	GGNCC	2 cut(s)	767, 1183
SchI	GAGTC	3 cut(s)	272, 782, 823
ScrFI	CCNGG	7 cut(s)	292, 375, 530, 580, 848, 879, 927
SduI	GDGCHC	1 cut(s)	304
SfaNI	GCATC	3 cut(s)	410, 901, 1372
SfcI	CTRYAG	4 cut(s)	413, 1022, 1227, 1267
SgrAI	CRCCGGYG	1 cut(s)	856
SinI	GGWCC	2 cut(s)	767, 1183
SmiMI	CAYNNNNRTG	2 cut(s)	1102, 1371
SphI	GCATGC	2 cut(s)	326, 846
SsiI	CCGC	8 cut(s)	326, 361, 950, 1012, 1250, 1336, 1440, 1501
SspI	AATATT	1 cut(s)	1241
SspMI	CTAG	1 cut(s)	936
StyD4I	CCNGG	7 cut(s)	290, 373, 528, 578, 846, 877, 925
TaaI	ACNGT	3 cut(s)	514, 1222, 1385
TaqI	TCGA	1 cut(s)	693
TauI	GCSGC	1 cut(s)	1015
TfiI	GAWTC	1 cut(s)	1211
Tru1I	TTAA	5 cut(s)	26, 333, 888, 1004, 1163
Tru9I	TTAA	5 cut(s)	26, 333, 888, 1004, 1163
TscAI	CASTG	3 cut(s)	309, 517, 1359
TseFI	GTSAC	3 cut(s)	238, 268, 746
TseI	GCWGC	4 cut(s)	71, 349, 533, 1229
Tsp45I	GTSAC	3 cut(s)	238, 268, 746
TspDTI	ATGAA	2 cut(s)	111, 1482
TspGWI	ACGGA	1 cut(s)	23
TspRI	CASTG	3 cut(s)	309, 517, 1359
Tth111I	GACNNNGTC	1 cut(s)	490
VpaK11BI	GGWCC	2 cut(s)	767, 1183
XapI	RAATTY	9 cut(s)	88, 162, 520, 541, 561, 590, 898, 1122, 1189
XceI	RCATGY	2 cut(s)	326, 846
XcmI	CCANNNNNNNNNTGG	1 cut(s)	200
XmiI	GTMKAC	1 cut(s)	412
XmnI	GAANNNNTTC	2 cut(s)	81, 679
XspI	CTAG	1 cut(s)	936
Zsp2I	ATGCAT	1 cut(s)	844

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.