pycom11g18870

Encoded by

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
Physical Location & Seq
Reverse (-)
21091135 .. 21091629
495 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 495 bp
ATGGCTAATTATAAGATGCCTTCTTCTTCTAAGCTTCTTCTTCTTGTGCTTCTCGGTGCTTTCGTTTTCACTAGTGGTGCAAGGAAGCTCGGCAGTGAAAAGGGTTCTTTTGAGGATCAGAAAAACTTGTTTCACCGTGGTGGTGGTGGACTAGGCGGTGGAGGTGGTCTTGGAGGTGGAGGAGGTTTAGGTGGTGGTAACGGTGCTGGTTTTGGTGGTGGTGCTGGAGCTGGAGCTGGTGGTGGACTTGGTGGCGGTGGTGGTGGAGGATTTGGTGGTGGTGGTGGTGGTGGCGGTGGAGGAGTAGGTGCTGGATCAGGTTTTGGTGGAGGAGCTGGTGGCGGGTTCGGAGCTGGGGGTGGCCTTGGGGGTGGAGCTGGAGGAGGTGGTGGCGGAGGATTCGGAGGTGGTGGAGGAGGACTTGGGGGAGGAGCCGGCGGAGGTTTCGGTGGAGGAGCTGGTGCTGGTGGTGGACTTGGGGGTGGATTGCCTTAA

Protein Analysis

165

Amino Acids

13.16

Weight (kDa)

9.99

Isoelectric Point (pI)

57.55

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0017554)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G20470
fragaria_vesca FvH4_3g23040
prunus_persica Prupe.4G216800_v2.0.a1
pyrus_communis pycom11g18870
rosa_chinensis RchiOBHm_Chr5g0040571
rosa_laevigata RLG00000033988
rosa_multiflora Rmu_sc0010369.1_g000003 Rmu_sc0031031.1_g000001
rosa_roxburghii Rroxscaffold_1G00040100 Rroxscaffold_1G00040830
rosa_rugosa Rorug05G0185700.1
rosa_samantha Rh5DG285100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 12
AciI CCGC 6 cut(s) 156, 255, 294, 342, 393, 438
AclWI GGATC 2 cut(s) 123, 322
AhlI ACTAGT 1 cut(s) 71
AleI CACNNNNGTG 1 cut(s) 138
AluBI AGCT 8 cut(s) 34, 88, 230, 236, 335, 353, 377, 458
AluI AGCT 8 cut(s) 34, 88, 230, 236, 335, 353, 377, 458
AlwI GGATC 2 cut(s) 123, 322
AoxI GGCC 1 cut(s) 361
AsuHPI GGTGA 1 cut(s) 125
BcuI ACTAGT 1 cut(s) 71
BfaI CTAG 2 cut(s) 72, 152
BmiI GGNNCC 1 cut(s) 433
BmsI GCATC 1 cut(s) 6
BpmI CTGGAG 3 cut(s) 246, 252, 399
BsaJI CCNNGG 2 cut(s) 136, 364
Bse118I RCCGGY 1 cut(s) 434
BseDI CCNNGG 2 cut(s) 136, 364
BseRI GAGGAG 7 cut(s) 195, 315, 345, 396, 429, 444, 468
BseYI CCCAGC 1 cut(s) 353
BshFI GGCC 1 cut(s) 363
BsiSI CCGG 1 cut(s) 435
BsnI GGCC 1 cut(s) 363
Bsp143I GATC 2 cut(s) 115, 314
BspACI CCGC 6 cut(s) 156, 255, 294, 342, 393, 438
BspANI GGCC 1 cut(s) 363
BspLI GGNNCC 1 cut(s) 433
BspPI GGATC 2 cut(s) 123, 322
BsrFI RCCGGY 1 cut(s) 434
BssAI RCCGGY 1 cut(s) 434
BssECI CCNNGG 2 cut(s) 136, 364
BssMI GATC 2 cut(s) 115, 314
BssT1I CCWWGG 1 cut(s) 364
Bst4CI ACNGT 2 cut(s) 137, 203
BstC8I GCNNGC 1 cut(s) 436
BstDEI CTNAG 1 cut(s) 30
BstDSI CCRYGG 1 cut(s) 136
BstKTI GATC 2 cut(s) 118, 317
BstMBI GATC 2 cut(s) 115, 314
BsuRI GGCC 1 cut(s) 363
BtgI CCRYGG 1 cut(s) 136
BtsI GCAGTG 1 cut(s) 100
BtsIMutI CAGTG 1 cut(s) 100
Cac8I GCNNGC 1 cut(s) 436
Cfr10I RCCGGY 1 cut(s) 434
DdeI CTNAG 1 cut(s) 30
DpnI GATC 2 cut(s) 117, 316
DpnII GATC 2 cut(s) 115, 314
EciI GGCGGA 2 cut(s) 408, 453
Eco130I CCWWGG 1 cut(s) 364
EcoT14I CCWWGG 1 cut(s) 364
ErhI CCWWGG 1 cut(s) 364
FaiI YATR 1 cut(s) 12
FauI CCCGC 1 cut(s) 335
FspBI CTAG 2 cut(s) 72, 152
GsaI CCCAGC 1 cut(s) 357
GsuI CTGGAG 3 cut(s) 246, 252, 399
HaeIII GGCC 1 cut(s) 363
HapII CCGG 1 cut(s) 435
HindIII AAGCTT 1 cut(s) 32
HinfI GANTC 1 cut(s) 399
HpaII CCGG 1 cut(s) 435
HphI GGTGA 1 cut(s) 125
Hpy166II GTNNAC 3 cut(s) 149, 245, 473
Hpy188I TCNGA 3 cut(s) 120, 350, 404
Hpy8I GTNNAC 3 cut(s) 149, 245, 473
HpyAV CCTTC 1 cut(s) 30
HpyCH4III ACNGT 2 cut(s) 137, 203
HpyCH4V TGCA 1 cut(s) 80
HpyF3I CTNAG 1 cut(s) 30
KroI GCCGGC 1 cut(s) 434
KroNI GCCGGC 1 cut(s) 436
Kzo9I GATC 2 cut(s) 115, 314
LmnI GCTCC 7 cut(s) 227, 233, 332, 350, 374, 431, 455
LweI GCATC 1 cut(s) 6
MaeI CTAG 2 cut(s) 72, 152
MaeIII GTNAC 1 cut(s) 197
MalI GATC 2 cut(s) 117, 316
MboI GATC 2 cut(s) 115, 314
MboII GAAGA 4 cut(s) 15, 18, 29, 32
MluCI AATT 1 cut(s) 7
MroNI GCCGGC 1 cut(s) 434
MseI TTAA 1 cut(s) 493
MslI CAYNNNNRTG 1 cut(s) 138
MspI CCGG 1 cut(s) 435
NaeI GCCGGC 1 cut(s) 436
NdeII GATC 2 cut(s) 115, 314
NgoMIV GCCGGC 1 cut(s) 434
NlaIV GGNNCC 1 cut(s) 433
NmeAIII GCCGAG 1 cut(s) 69
OliI CACNNNNGTG 1 cut(s) 138
PcsI WCGNNNNNNNCGW 1 cut(s) 60
PdiI GCCGGC 1 cut(s) 436
PfeI GAWTC 1 cut(s) 399
PsiI TTATAA 1 cut(s) 12
PspFI CCCAGC 1 cut(s) 353
PspN4I GGNNCC 1 cut(s) 433
RseI CAYNNNNRTG 1 cut(s) 138
SaqAI TTAA 1 cut(s) 493
Sau3AI GATC 2 cut(s) 115, 314
SfaNI GCATC 1 cut(s) 6
SmiMI CAYNNNNRTG 1 cut(s) 138
SpeI ACTAGT 1 cut(s) 71
Sse9I AATT 1 cut(s) 7
SsiI CCGC 6 cut(s) 156, 255, 294, 342, 393, 438
SspMI CTAG 2 cut(s) 72, 152
StyI CCWWGG 1 cut(s) 364
TaaI ACNGT 2 cut(s) 137, 203
TasI AATT 1 cut(s) 7
TfiI GAWTC 1 cut(s) 399
Tru1I TTAA 1 cut(s) 493
Tru9I TTAA 1 cut(s) 493
TscAI CASTG 1 cut(s) 100
TspRI CASTG 1 cut(s) 100
XspI CTAG 2 cut(s) 72, 152
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.