pycom11g19530

Pollen proteins Ole e I like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
OG0016113
Physical Location & Seq
Reverse (-)
22063296 .. 22065138
1843 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 447 bp
ATGGAAGCGCAGACGAAGAAGGAGCTGACGGTGGCGGTGGGGTTTGTTATCTTCACAGTCTTGATTTCCGGCGTCGGAGCCTGGACCGGTGAAATCCACGGCAGAGTTGTATGCGATGTCTGTGGCGACTCAGCCGTCGGACCCGAAGATCATGTTCTAGAAGGTGCTGAGGTAGCTGTACTATGCATTACGAAATCAGGTGAAGTTCTAAATTACCAGGCATTCACGAATGATAAGGGGGTATATACAGTGGCGGAGACGATGCCCGAGAGTGACAGGTGGGATGCATGCCTGGCACGACCTATCAGCAGCTTCCATGAGCACTGCACCCATCTTGGGGGTGGTAGCTCAGGCGTAAAGTTCACTTATAATCACCCATCTGGCTATTCTCACACCGTTAGAACTTTCGTCTATCGACCAGCAAGCGTACCAGCATACTGCATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pollen_Ole_e_I

Protein Analysis

149

Amino Acids

15.91

Weight (kDa)

5.55

Isoelectric Point (pI)

32.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pollen_Ole_e_1 PF01190 32 - 115 4.4e-08 Pollen protein Ole e 1 like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016113)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G54855
fragaria_vesca FvH4_3g22360
malus_domestica MD03G1206100.v1.1 MD11G1221600.v1.1
prunus_persica Prupe.4G210000_v2.0.a1
pyrus_communis pycom11g19530
rosa_chinensis RchiOBHm_Chr5g0038891
rosa_laevigata RLG00000033879
rosa_multiflora Rmu_sc0000533.1_g000083
rosa_roxburghii Rroxscaffold_1G00042130
rosa_rugosa Rorug05G0174900
rosa_samantha Rh5BG266400 Rh5CG299400 Rh5DG273300
rosa_wichuraiana Rw5G024440

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 369
AasI GACNNNNNNGTC 1 cut(s) 134
AciI CCGC 2 cut(s) 35, 254
AcyI GRCGYC 1 cut(s) 72
AfaI GTAC 2 cut(s) 180, 429
AfiI CCNNNNNNNGG 2 cut(s) 336, 337
AgeI ACCGGT 1 cut(s) 86
AjnI CCWGG 3 cut(s) 80, 216, 291
AluBI AGCT 4 cut(s) 25, 176, 312, 348
AluI AGCT 4 cut(s) 25, 176, 312, 348
Alw21I GWGCWC 1 cut(s) 324
Alw26I GTCTC 1 cut(s) 251
Ama87I CYCGRG 1 cut(s) 266
ApeKI GCWGC 1 cut(s) 309
AsiGI ACCGGT 1 cut(s) 86
AspLEI GCGC 1 cut(s) 10
AspS9I GGNCC 2 cut(s) 84, 140
AsuHPI GGTGA 3 cut(s) 101, 212, 365
AvaI CYCGRG 1 cut(s) 266
AvaII GGWCC 2 cut(s) 84, 140
Bbv12I GWGCWC 1 cut(s) 324
BbvCI CCTCAGC 1 cut(s) 168
BbvI GCAGC 1 cut(s) 321
BccI CCATC 2 cut(s) 339, 385
BceAI ACGGC 2 cut(s) 115, 119
BciT130I CCWGG 3 cut(s) 82, 218, 293
BcoDI GTCTC 1 cut(s) 251
BfaI CTAG 1 cut(s) 158
BisI GCNGC 1 cut(s) 310
BlsI GCNGC 1 cut(s) 311
Bme1390I CCNGG 3 cut(s) 82, 218, 293
Bme18I GGWCC 2 cut(s) 84, 140
BmeT110I CYCGRG 1 cut(s) 266
BmgT120I GGNCC 2 cut(s) 84, 140
BmiI GGNNCC 2 cut(s) 79, 142
BmrFI CCNGG 3 cut(s) 82, 218, 293
BmsI GCATC 2 cut(s) 252, 274
Bpu10I CCTNAGC 2 cut(s) 168, 349
BsaHI GRCGYC 1 cut(s) 72
BsaJI CCNNGG 1 cut(s) 97
BsaWI WCCGGW 1 cut(s) 86
Bsc4I CCNNNNNNNGG 2 cut(s) 336, 337
Bse118I RCCGGY 1 cut(s) 86
BseBI CCWGG 3 cut(s) 82, 218, 293
BseDI CCNNGG 1 cut(s) 97
BseGI GGATG 1 cut(s) 289
BseLI CCNNNNNNNGG 2 cut(s) 336, 337
BseMII CTCAG 3 cut(s) 144, 159, 363
BseXI GCAGC 1 cut(s) 321
BsgI GTGCAG 1 cut(s) 310
BshTI ACCGGT 1 cut(s) 86
BsiHKAI GWGCWC 1 cut(s) 324
BsiHKCI CYCGRG 1 cut(s) 266
BsiSI CCGG 2 cut(s) 69, 87
BslI CCNNNNNNNGG 2 cut(s) 336, 337
BsmAI GTCTC 1 cut(s) 251
BsmBI CGTCTC 1 cut(s) 251
BsmI GAATGC 1 cut(s) 221
BsoBI CYCGRG 1 cut(s) 266
Bsp1286I GDGCHC 1 cut(s) 324
Bsp143I GATC 1 cut(s) 148
BspACI CCGC 2 cut(s) 35, 254
BspCNI CTCAG 3 cut(s) 143, 160, 362
BspLI GGNNCC 2 cut(s) 79, 142
BsrFI RCCGGY 1 cut(s) 86
BssAI RCCGGY 1 cut(s) 86
BssECI CCNNGG 1 cut(s) 97
BssMI GATC 1 cut(s) 148
BssNI GRCGYC 1 cut(s) 72
Bst2UI CCWGG 3 cut(s) 82, 218, 293
Bst4CI ACNGT 4 cut(s) 31, 58, 250, 397
BstACI GRCGYC 1 cut(s) 72
BstC8I GCNNGC 2 cut(s) 289, 424
BstDEI CTNAG 3 cut(s) 130, 168, 349
BstDSI CCRYGG 1 cut(s) 97
BstF5I GGATG 1 cut(s) 289
BstHHI GCGC 1 cut(s) 10
BstKTI GATC 1 cut(s) 151
BstMAI GTCTC 1 cut(s) 251
BstMBI GATC 1 cut(s) 148
BstMWI GCNNNNNNNGC 2 cut(s) 173, 293
BstNI CCWGG 3 cut(s) 82, 218, 293
BstNSI RCATGY 1 cut(s) 291
BstSCI CCNGG 3 cut(s) 80, 216, 291
BstV1I GCAGC 1 cut(s) 321
BtgI CCRYGG 1 cut(s) 97
BtgZI GCGATG 1 cut(s) 129
BtsCI GGATG 1 cut(s) 289
BtsI GCAGTG 1 cut(s) 322
BtsIMutI CAGTG 2 cut(s) 255, 322
Cac8I GCNNGC 2 cut(s) 289, 424
CfoI GCGC 1 cut(s) 10
Cfr10I RCCGGY 1 cut(s) 86
Cfr13I GGNCC 2 cut(s) 84, 140
CseI GACGC 1 cut(s) 61
Csp6I GTAC 2 cut(s) 179, 428
CspAI ACCGGT 1 cut(s) 86
CviAII CATG 3 cut(s) 152, 288, 317
CviJI RGCY 7 cut(s) 25, 80, 134, 176, 312, 348, 384
CviKI_1 RGCY 7 cut(s) 25, 80, 134, 176, 312, 348, 384
CviQI GTAC 2 cut(s) 179, 428
DdeI CTNAG 3 cut(s) 130, 168, 349
DpnI GATC 1 cut(s) 150
DpnII GATC 1 cut(s) 148
DrdI GACNNNNNNGTC 1 cut(s) 134
DseDI GACNNNNNNGTC 1 cut(s) 134
EciI GGCGGA 1 cut(s) 269
Eco47I GGWCC 2 cut(s) 84, 140
Eco88I CYCGRG 1 cut(s) 266
EcoRII CCWGG 3 cut(s) 80, 216, 291
EcoT22I ATGCAT 2 cut(s) 188, 289
Esp3I CGTCTC 1 cut(s) 251
FaeI CATG 3 cut(s) 155, 291, 320
FaiI YATR 9 cut(s) 112, 153, 184, 244, 246, 289, 318, 369, 436
FatI CATG 3 cut(s) 151, 287, 316
Fnu4HI GCNGC 1 cut(s) 310
FokI GGATG 1 cut(s) 296
Fsp4HI GCNGC 1 cut(s) 310
FspBI CTAG 1 cut(s) 158
GlaI GCGC 1 cut(s) 9
GluI GCNGC 1 cut(s) 310
HapII CCGG 2 cut(s) 69, 87
HgaI GACGC 1 cut(s) 61
HhaI GCGC 1 cut(s) 10
Hin1I GRCGYC 1 cut(s) 72
Hin1II CATG 3 cut(s) 155, 291, 320
Hin6I GCGC 1 cut(s) 8
HinP1I GCGC 1 cut(s) 8
HinfI GANTC 1 cut(s) 128
HpaII CCGG 2 cut(s) 69, 87
HphI GGTGA 3 cut(s) 101, 212, 365
Hpy166II GTNNAC 1 cut(s) 363
Hpy188I TCNGA 2 cut(s) 77, 140
Hpy188III TCNNGA 3 cut(s) 61, 158, 226
Hpy8I GTNNAC 1 cut(s) 363
Hpy99I CGWCG 2 cut(s) 77, 140
HpyAV CCTTC 2 cut(s) 13, 155
HpyCH4III ACNGT 4 cut(s) 31, 58, 250, 397
HpyCH4V TGCA 4 cut(s) 186, 287, 327, 441
HpyF10VI GCNNNNNNNGC 2 cut(s) 173, 293
HpyF3I CTNAG 3 cut(s) 130, 168, 349
Hsp92I GRCGYC 1 cut(s) 72
Hsp92II CATG 3 cut(s) 155, 291, 320
HspAI GCGC 1 cut(s) 8
Kzo9I GATC 1 cut(s) 148
LmnI GCTCC 2 cut(s) 22, 77
Lsp1109I GCAGC 1 cut(s) 321
LweI GCATC 2 cut(s) 252, 274
MaeI CTAG 1 cut(s) 158
MaeIII GTNAC 1 cut(s) 272
MalI GATC 1 cut(s) 150
MboI GATC 1 cut(s) 148
MboII GAAGA 3 cut(s) 28, 43, 158
MhlI GDGCHC 1 cut(s) 324
MluCI AATT 1 cut(s) 211
MlyI GAGTC 1 cut(s) 122
MmeI TCCRAC 2 cut(s) 55, 118
MnlI CCTC 1 cut(s) 163
Mph1103I ATGCAT 2 cut(s) 188, 289
MspI CCGG 2 cut(s) 69, 87
MspR9I CCNGG 3 cut(s) 82, 218, 293
Mva1269I GAATGC 1 cut(s) 221
MvaI CCWGG 3 cut(s) 82, 218, 293
MwoI GCNNNNNNNGC 2 cut(s) 173, 293
NdeII GATC 1 cut(s) 148
NlaIII CATG 3 cut(s) 155, 291, 320
NlaIV GGNNCC 2 cut(s) 79, 142
NmuCI GTSAC 1 cut(s) 272
NsiI ATGCAT 2 cut(s) 188, 289
NspI RCATGY 1 cut(s) 291
PaeI GCATGC 1 cut(s) 291
PctI GAATGC 1 cut(s) 221
PinAI ACCGGT 1 cut(s) 86
PkrI GCNGC 1 cut(s) 311
PleI GAGTC 1 cut(s) 122
PpsI GAGTC 1 cut(s) 122
PsiI TTATAA 1 cut(s) 369
Psp6I CCWGG 3 cut(s) 80, 216, 291
PspGI CCWGG 3 cut(s) 80, 216, 291
PspN4I GGNNCC 2 cut(s) 79, 142
PspPI GGNCC 2 cut(s) 84, 140
RsaI GTAC 2 cut(s) 180, 429
RsaNI GTAC 2 cut(s) 179, 428
SatI GCNGC 1 cut(s) 310
Sau3AI GATC 1 cut(s) 148
Sau96I GGNCC 2 cut(s) 84, 140
SchI GAGTC 1 cut(s) 122
ScrFI CCNGG 3 cut(s) 82, 218, 293
SduI GDGCHC 1 cut(s) 324
SetI ASST 9 cut(s) 27, 166, 174, 178, 202, 281, 304, 314, 350
SfaNI GCATC 2 cut(s) 252, 274
SinI GGWCC 2 cut(s) 84, 140
SphI GCATGC 1 cut(s) 291
Sse9I AATT 1 cut(s) 211
SsiI CCGC 2 cut(s) 35, 254
SspMI CTAG 1 cut(s) 158
StyD4I CCNGG 3 cut(s) 80, 216, 291
TaaI ACNGT 4 cut(s) 31, 58, 250, 397
TaqI TCGA 1 cut(s) 415
TasI AATT 1 cut(s) 211
TatI WGTACW 1 cut(s) 178
TscAI CASTG 2 cut(s) 255, 329
TseFI GTSAC 1 cut(s) 272
TseI GCWGC 1 cut(s) 309
Tsp45I GTSAC 1 cut(s) 272
TspRI CASTG 2 cut(s) 255, 329
VpaK11BI GGWCC 2 cut(s) 84, 140
XbaI TCTAGA 1 cut(s) 157
XceI RCATGY 1 cut(s) 291
XcmI CCANNNNNNNNNTGG 1 cut(s) 338
XspI CTAG 1 cut(s) 158
Zsp2I ATGCAT 2 cut(s) 188, 289
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.