pycom11g19590

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
OG0012532
Physical Location & Seq
Forward (+)
22126183 .. 22126683
501 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 501 bp
ATGGTTCAGACGCTGGAAGCTATAAAGGGTGGTGGAGGATCCATTAGAATCGGGACCACTGGGACAGTCAGTTCCCTAATGACAAGAGAATTACAGTCCAGCAAAGTCGCATCTCTGACGCCTGCATCTTCCAGAAATAAACATCAAACAGCTTCTGTTTCTGTTCTCTGTGGTGCTACTACTCCAAAAAGGCTACAACCAAGAAAGTCATGTGATGAAGCTAGCAGCAGTGGAAGCAGCAATGACATTAATGCCAGACACCCTGAAGTTTCCCAGAAAACAAAAACTCATACTAAAAATACTAGTCAAATCCCGATGCTGAGCTCTGATCATCCTGGTCTGGATAAAACTCCTAGTAGGCAGAAAACTAGTAAAAAAGGAACTAACATTGTTGAAGTTGTGGACATAAAATGTGGGAGCTCGGATAGAGCATGGGCTGGCCCTATAACAAACCGACTGAAGAAGCTGGGTTTCTCAAAGCTATCTGAGAGCATTGTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

167

Amino Acids

17.59

Weight (kDa)

10.12

Isoelectric Point (pI)

36.91

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012532)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G54850
fragaria_vesca FvH4_3g22210
malus_domestica MD11G1222100.v1.1
prunus_persica Prupe.4G209200_v2.0.a1 Prupe.4G209200_v2.0.a1 Prupe.4G209200_v2.0.a1 Prupe.4G209200_v2.0.a1
pyrus_communis pycom11g19590
rosa_chinensis RchiOBHm_Chr5g0038281
rosa_laevigata RLG00000033842
rosa_multiflora Rmu_sc0012148.1_g000002 Rmu_sc0015248.1_g000002
rosa_roxburghii Rroxscaffold_1G00042770
rosa_rugosa Rorug05G0171600
rosa_samantha Rh5AG259000 Rh5BG262700 Rh5CG295100 Rh5DG271700
rosa_wichuraiana Rw5G024240

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 33, 46
AcuI CTGAAG 2 cut(s) 285, 479
AcyI GRCGYC 1 cut(s) 119
AgsI TTSAA 1 cut(s) 395
AhlI ACTAGT 2 cut(s) 302, 368
AjnI CCWGG 1 cut(s) 334
AloI GAACNNNNNNTCC 2 cut(s) 55, 87
AluBI AGCT 7 cut(s) 20, 152, 221, 324, 420, 466, 481
AluI AGCT 7 cut(s) 20, 152, 221, 324, 420, 466, 481
Alw21I GWGCWC 2 cut(s) 326, 422
AlwI GGATC 2 cut(s) 33, 46
AlwNI CAGNNNCTG 2 cut(s) 13, 155
AoxI GGCC 1 cut(s) 439
ApeKI GCWGC 2 cut(s) 225, 237
AseI ATTAAT 1 cut(s) 249
AspS9I GGNCC 2 cut(s) 54, 440
AsuNHI GCTAGC 1 cut(s) 221
AvaII GGWCC 1 cut(s) 54
BamHI GGATCC 1 cut(s) 38
BanII GRGCYC 2 cut(s) 326, 422
Bbv12I GWGCWC 2 cut(s) 326, 422
BbvI GCAGC 2 cut(s) 237, 249
BciT130I CCWGG 1 cut(s) 336
BclI TGATCA 1 cut(s) 328
BcuI ACTAGT 2 cut(s) 302, 368
BfaI CTAG 4 cut(s) 222, 303, 354, 369
BisI GCNGC 2 cut(s) 226, 238
BlpI GCTNAGC 1 cut(s) 320
BlsI GCNGC 2 cut(s) 227, 239
Bme1390I CCNGG 1 cut(s) 336
Bme18I GGWCC 1 cut(s) 54
BmgT120I GGNCC 2 cut(s) 54, 440
BmiI GGNNCC 2 cut(s) 40, 55
BmrFI CCNGG 1 cut(s) 336
BmrI ACTGGG 1 cut(s) 69
BmsI GCATC 3 cut(s) 119, 134, 306
BmtI GCTAGC 1 cut(s) 225
BmuI ACTGGG 1 cut(s) 69
Bpu1102I GCTNAGC 1 cut(s) 320
BsaHI GRCGYC 1 cut(s) 119
Bse1I ACTGG 1 cut(s) 64
Bse3DI GCAATG 1 cut(s) 247
BseBI CCWGG 1 cut(s) 336
BseGI GGATG 1 cut(s) 331
BseMI GCAATG 1 cut(s) 247
BseMII CTCAG 2 cut(s) 311, 477
BseNI ACTGG 1 cut(s) 64
BseXI GCAGC 2 cut(s) 237, 249
BseYI CCCAGC 1 cut(s) 466
BshFI GGCC 1 cut(s) 441
BsiHKAI GWGCWC 2 cut(s) 326, 422
BslFI GGGAC 2 cut(s) 67, 76
BsmFI GGGAC 2 cut(s) 67, 76
BsnI GGCC 1 cut(s) 441
Bsp1286I GDGCHC 2 cut(s) 326, 422
Bsp143I GATC 2 cut(s) 38, 328
Bsp1720I GCTNAGC 1 cut(s) 320
BspANI GGCC 1 cut(s) 441
BspCNI CTCAG 2 cut(s) 312, 478
BspLI GGNNCC 2 cut(s) 40, 55
BspOI GCTAGC 1 cut(s) 225
BspPI GGATC 2 cut(s) 33, 46
BsrDI GCAATG 1 cut(s) 247
BsrI ACTGG 1 cut(s) 64
BssMI GATC 2 cut(s) 38, 328
BssNI GRCGYC 1 cut(s) 119
Bst2UI CCWGG 1 cut(s) 336
Bst4CI ACNGT 2 cut(s) 67, 96
BstACI GRCGYC 1 cut(s) 119
BstC8I GCNNGC 3 cut(s) 123, 223, 439
BstDEI CTNAG 2 cut(s) 320, 486
BstF5I GGATG 1 cut(s) 331
BstKTI GATC 2 cut(s) 41, 331
BstMBI GATC 2 cut(s) 38, 328
BstMWI GCNNNNNNNGC 1 cut(s) 234
BstNI CCWGG 1 cut(s) 336
BstSCI CCNGG 1 cut(s) 334
BstV1I GCAGC 2 cut(s) 237, 249
BstX2I RGATCY 1 cut(s) 38
BstYI RGATCY 1 cut(s) 38
BsuRI GGCC 1 cut(s) 441
BtsCI GGATG 1 cut(s) 331
BtsI GCAGTG 1 cut(s) 235
BtsIMutI CAGTG 2 cut(s) 57, 235
Cac8I GCNNGC 3 cut(s) 123, 223, 439
CaiI CAGNNNCTG 2 cut(s) 13, 155
Cfr13I GGNCC 2 cut(s) 54, 440
CseI GACGC 2 cut(s) 19, 127
CviAII CATG 2 cut(s) 210, 432
DdeI CTNAG 2 cut(s) 320, 486
DpnI GATC 2 cut(s) 40, 330
DpnII GATC 2 cut(s) 38, 328
Ecl136II GAGCTC 2 cut(s) 324, 420
Eco24I GRGCYC 2 cut(s) 326, 422
Eco47I GGWCC 1 cut(s) 54
Eco53kI GAGCTC 2 cut(s) 324, 420
Eco57I CTGAAG 2 cut(s) 285, 479
EcoICRI GAGCTC 2 cut(s) 324, 420
EcoRII CCWGG 1 cut(s) 334
EcoT38I GRGCYC 2 cut(s) 326, 422
FaeI CATG 2 cut(s) 213, 435
FaiI YATR 6 cut(s) 23, 211, 291, 407, 433, 446
FaqI GGGAC 2 cut(s) 67, 76
FatI CATG 2 cut(s) 209, 431
FbaI TGATCA 1 cut(s) 328
Fnu4HI GCNGC 2 cut(s) 226, 238
FokI GGATG 1 cut(s) 318
FriOI GRGCYC 2 cut(s) 326, 422
Fsp4HI GCNGC 2 cut(s) 226, 238
FspBI CTAG 4 cut(s) 222, 303, 354, 369
GluI GCNGC 2 cut(s) 226, 238
GsaI CCCAGC 1 cut(s) 470
HaeIII GGCC 1 cut(s) 441
HgaI GACGC 2 cut(s) 19, 127
Hin1I GRCGYC 1 cut(s) 119
Hin1II CATG 2 cut(s) 213, 435
HinfI GANTC 1 cut(s) 48
Hpy166II GTNNAC 1 cut(s) 403
Hpy188I TCNGA 5 cut(s) 9, 117, 328, 424, 487
Hpy188III TCNNGA 4 cut(s) 52, 132, 313, 341
Hpy8I GTNNAC 1 cut(s) 403
HpyCH4III ACNGT 2 cut(s) 67, 96
HpyCH4V TGCA 1 cut(s) 125
HpyF10VI GCNNNNNNNGC 1 cut(s) 234
HpyF3I CTNAG 2 cut(s) 320, 486
Hsp92I GRCGYC 1 cut(s) 119
Hsp92II CATG 2 cut(s) 213, 435
Ksp22I TGATCA 1 cut(s) 328
Kzo9I GATC 2 cut(s) 38, 328
LmnI GCTCC 1 cut(s) 417
Lsp1109I GCAGC 2 cut(s) 237, 249
LweI GCATC 3 cut(s) 119, 134, 306
MaeI CTAG 4 cut(s) 222, 303, 354, 369
MalI GATC 2 cut(s) 40, 330
MboI GATC 2 cut(s) 38, 328
MboII GAAGA 2 cut(s) 120, 472
MflI RGATCY 1 cut(s) 38
MhlI GDGCHC 2 cut(s) 326, 422
MluCI AATT 1 cut(s) 89
MnlI CCTC 1 cut(s) 29
MseI TTAA 1 cut(s) 249
MspR9I CCNGG 1 cut(s) 336
MvaI CCWGG 1 cut(s) 336
MwoI GCNNNNNNNGC 1 cut(s) 234
NdeII GATC 2 cut(s) 38, 328
NheI GCTAGC 1 cut(s) 221
NlaIII CATG 2 cut(s) 213, 435
NlaIV GGNNCC 2 cut(s) 40, 55
PfeI GAWTC 1 cut(s) 48
PkrI GCNGC 2 cut(s) 227, 239
PshBI ATTAAT 1 cut(s) 249
Psp124BI GAGCTC 2 cut(s) 326, 422
Psp6I CCWGG 1 cut(s) 334
PspFI CCCAGC 1 cut(s) 466
PspGI CCWGG 1 cut(s) 334
PspN4I GGNNCC 2 cut(s) 40, 55
PspPI GGNCC 2 cut(s) 54, 440
PstNI CAGNNNCTG 2 cut(s) 13, 155
PsuI RGATCY 1 cut(s) 38
SacI GAGCTC 2 cut(s) 326, 422
SaqAI TTAA 1 cut(s) 249
SatI GCNGC 2 cut(s) 226, 238
Sau3AI GATC 2 cut(s) 38, 328
Sau96I GGNCC 2 cut(s) 54, 440
ScrFI CCNGG 1 cut(s) 336
SduI GDGCHC 2 cut(s) 326, 422
SetI ASST 7 cut(s) 22, 154, 223, 326, 422, 468, 483
SfaNI GCATC 3 cut(s) 119, 134, 306
SinI GGWCC 1 cut(s) 54
SpeI ACTAGT 2 cut(s) 302, 368
Sse9I AATT 1 cut(s) 89
SspMI CTAG 4 cut(s) 222, 303, 354, 369
SstI GAGCTC 2 cut(s) 326, 422
StyD4I CCNGG 1 cut(s) 334
TaaI ACNGT 2 cut(s) 67, 96
TasI AATT 1 cut(s) 89
TfiI GAWTC 1 cut(s) 48
Tru1I TTAA 1 cut(s) 249
Tru9I TTAA 1 cut(s) 249
TscAI CASTG 2 cut(s) 64, 235
TseI GCWGC 2 cut(s) 225, 237
TspDTI ATGAA 1 cut(s) 231
TspRI CASTG 2 cut(s) 64, 235
VpaK11BI GGWCC 1 cut(s) 54
VspI ATTAAT 1 cut(s) 249
XspI CTAG 4 cut(s) 222, 303, 354, 369
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.