Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0015956

Physical Location & Seq

Genomic Coordinates Forward (+)

22133607 .. 22134943

Gene Structure 1337 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 519 bp

ATGGCTTCAATTCCATTTACTAGCGCTGCTACCCACTTATGCTTCGCCGACAAGTCCTTCAATCCTCCAATCGAATTCAGTACCCGGTTTCTGGGCACCCGGAATAGGCTCGGGTGGGTCCGACCGGTTGGTATCGGAACCTCCAACGGGTCGAGAGCCAAGTGCTGGTTCAAATTTGGTAAAAATGGTGTGGGTGCTGAAGATGCTGGCATTTATGGAAGCCAATCCCGTGACGATTATGATAAAGATGACGTTGAACAGTATTTCAACTACATGGGCATGCTTGCTGTGGAAGGTACATATGATAAGATGAACGCTCTTTTAAGCCAAAACATCCACCCAGTAGACGTTTTGTTGTTGATGGCTGCCTCCGAAGGTGACCAGCCGAAAATCGAAGAACTTTTGAGAGCCGGGGCGAGTTACTCTGTCAAGGACGCGGATGGGCGAACGGCCCTTGACAGGGCTGCGAGTGACGAAATCAAAGACCTTATTCTTGGTTTTTCGGTTCAAAAAGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006886 GO:0006996 GO:0008104 GO:0008150 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009628 GO:0009657 GO:0009658 GO:0009941 GO:0009987 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0022607 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0033036 GO:0034357 GO:0034613 GO:0042651 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0050896 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055035 GO:0070727 GO:0071702 GO:0071705 GO:0071840 GO:0080167 GO:0090391

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

173

Amino Acids

18.8

Weight (kDa)

5.18

Isoelectric Point (pI)

37.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015956)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G50900
fragaria_vesca	FvH4_3g22190
malus_domestica	MD03G1207700.v1.1
prunus_persica	Prupe.4G209000_v2.0.a1
pyrus_communis	pycom03g15670 pycom11g19600
rosa_chinensis	RchiOBHm_Chr5g0038151
rosa_laevigata	RLG00000033835
rosa_multiflora	Rmu_co8360857.1_g000001 Rmu_sc0002670.1_g000003
rosa_rugosa	Rorug05G0171000
rosa_samantha	Rh5BG262000 Rh5CG294100 Rh5DG271100
rosa_wichuraiana	Rw5G024180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	95
AccB7I	CCANNNNNTGG	1 cut(s)	165
AccI	GTMKAC	1 cut(s)	345
AccII	CGCG	1 cut(s)	437
AciI	CCGC	1 cut(s)	437
AcsI	RAATTY	2 cut(s)	74, 173
AcuI	CTGAAG	1 cut(s)	219
AfaI	GTAC	2 cut(s)	82, 298
AfeI	AGCGCT	1 cut(s)	25
AfiI	CCNNNNNNNGG	6 cut(s)	91, 105, 147, 165, 459, 460
AgeI	ACCGGT	1 cut(s)	124
AgsI	TTSAA	6 cut(s)	9, 61, 172, 257, 268, 509
AjuI	GAANNNNNNNTTGG	2 cut(s)	152, 184
Ama87I	CYCGRG	1 cut(s)	110
Aor51HI	AGCGCT	1 cut(s)	25
AoxI	GGCC	1 cut(s)	450
ApeKI	GCWGC	3 cut(s)	26, 365, 464
ApoI	RAATTY	2 cut(s)	74, 173
AsiGI	ACCGGT	1 cut(s)	124
AspLEI	GCGC	1 cut(s)	26
AspS9I	GGNCC	2 cut(s)	118, 451
AsuC2I	CCSGG	3 cut(s)	85, 100, 412
AsuHPI	GGTGA	1 cut(s)	389
AvaI	CYCGRG	1 cut(s)	110
AvaII	GGWCC	1 cut(s)	118
BaeGI	GKGCMC	1 cut(s)	98
BanI	GGYRCC	1 cut(s)	95
BbvI	GCAGC	3 cut(s)	13, 352, 451
BccI	CCATC	2 cut(s)	355, 434
BceAI	ACGGC	1 cut(s)	465
BcnI	CCSGG	3 cut(s)	85, 100, 412
BfaI	CTAG	1 cut(s)	21
BfoI	RGCGCY	1 cut(s)	27
BisI	GCNGC	3 cut(s)	27, 366, 465
BlsI	GCNGC	3 cut(s)	28, 367, 466
Bme1390I	CCNGG	3 cut(s)	85, 100, 412
Bme18I	GGWCC	1 cut(s)	118
BmeT110I	CYCGRG	1 cut(s)	110
BmgT120I	GGNCC	2 cut(s)	118, 451
BmiI	GGNNCC	3 cut(s)	97, 119, 139
BmrFI	CCNGG	3 cut(s)	85, 100, 412
BmrI	ACTGGG	1 cut(s)	335
BmsI	GCATC	1 cut(s)	193
BmuI	ACTGGG	1 cut(s)	335
BpuMI	CCSGG	3 cut(s)	85, 100, 412
BsaJI	CCNNGG	1 cut(s)	411
BsaWI	WCCGGW	1 cut(s)	124
Bsc4I	CCNNNNNNNGG	6 cut(s)	91, 105, 147, 165, 459, 460
Bse118I	RCCGGY	1 cut(s)	124
Bse1I	ACTGG	1 cut(s)	341
BseDI	CCNNGG	1 cut(s)	411
BseGI	GGATG	2 cut(s)	333, 445
BseLI	CCNNNNNNNGG	6 cut(s)	91, 105, 147, 165, 459, 460
BseNI	ACTGG	1 cut(s)	341
BseSI	GKGCMC	1 cut(s)	98
BseXI	GCAGC	3 cut(s)	13, 352, 451
Bsh1236I	CGCG	1 cut(s)	437
Bsh1285I	CGRYCG	1 cut(s)	125
BshFI	GGCC	1 cut(s)	452
BshNI	GGYRCC	1 cut(s)	95
BshTI	ACCGGT	1 cut(s)	124
BsiEI	CGRYCG	1 cut(s)	125
BsiHKCI	CYCGRG	1 cut(s)	110
BsiSI	CCGG	4 cut(s)	85, 100, 125, 411
BslI	CCNNNNNNNGG	6 cut(s)	91, 105, 147, 165, 459, 460
BsnI	GGCC	1 cut(s)	452
BsoBI	CYCGRG	1 cut(s)	110
Bsp1286I	GDGCHC	1 cut(s)	98
BspACI	CCGC	1 cut(s)	437
BspANI	GGCC	1 cut(s)	452
BspFNI	CGCG	1 cut(s)	437
BspLI	GGNNCC	3 cut(s)	97, 119, 139
BspT107I	GGYRCC	1 cut(s)	95
BsrFI	RCCGGY	1 cut(s)	124
BsrI	ACTGG	1 cut(s)	341
BssAI	RCCGGY	1 cut(s)	124
BssECI	CCNNGG	1 cut(s)	411
Bst4CI	ACNGT	1 cut(s)	261
BstC8I	GCNNGC	3 cut(s)	208, 281, 285
BstEII	GGTNACC	1 cut(s)	377
BstF5I	GGATG	2 cut(s)	333, 445
BstFNI	CGCG	1 cut(s)	437
BstH2I	RGCGCY	1 cut(s)	27
BstHHI	GCGC	1 cut(s)	26
BstMCI	CGRYCG	1 cut(s)	125
BstMWI	GCNNNNNNNGC	1 cut(s)	203
BstNSI	RCATGY	1 cut(s)	283
BstPI	GGTNACC	1 cut(s)	377
BstSCI	CCNGG	3 cut(s)	83, 98, 410
BstSLI	GKGCMC	1 cut(s)	98
BstUI	CGCG	1 cut(s)	437
BstV1I	GCAGC	3 cut(s)	13, 352, 451
BsuRI	GGCC	1 cut(s)	452
BtsCI	GGATG	2 cut(s)	333, 445
Cac8I	GCNNGC	3 cut(s)	208, 281, 285
CfoI	GCGC	1 cut(s)	26
Cfr10I	RCCGGY	1 cut(s)	124
Cfr13I	GGNCC	2 cut(s)	118, 451
CseI	GACGC	1 cut(s)	443
Csp6I	GTAC	2 cut(s)	81, 297
CspAI	ACCGGT	1 cut(s)	124
CviAII	CATG	3 cut(s)	274, 280, 516
CviQI	GTAC	2 cut(s)	81, 297
Eco47I	GGWCC	1 cut(s)	118
Eco47III	AGCGCT	1 cut(s)	25
Eco57I	CTGAAG	1 cut(s)	219
Eco88I	CYCGRG	1 cut(s)	110
Eco91I	GGTNACC	1 cut(s)	377
EcoO65I	GGTNACC	1 cut(s)	377
EcoRI	GAATTC	1 cut(s)	74
FaeI	CATG	3 cut(s)	277, 283, 519
FaiI	YATR	8 cut(s)	40, 216, 240, 275, 281, 301, 303, 517
FatI	CATG	3 cut(s)	273, 279, 515
FauNDI	CATATG	1 cut(s)	301
FblI	GTMKAC	1 cut(s)	345
Fnu4HI	GCNGC	3 cut(s)	27, 366, 465
FokI	GGATG	2 cut(s)	320, 452
Fsp4HI	GCNGC	3 cut(s)	27, 366, 465
FspBI	CTAG	1 cut(s)	21
GlaI	GCGC	1 cut(s)	25
GluI	GCNGC	3 cut(s)	27, 366, 465
HaeII	RGCGCY	1 cut(s)	27
HaeIII	GGCC	1 cut(s)	452
HapII	CCGG	4 cut(s)	85, 100, 125, 411
HgaI	GACGC	1 cut(s)	443
HhaI	GCGC	1 cut(s)	26
Hin1II	CATG	3 cut(s)	277, 283, 519
Hin6I	GCGC	1 cut(s)	24
HinP1I	GCGC	1 cut(s)	24
HpaII	CCGG	4 cut(s)	85, 100, 125, 411
HphI	GGTGA	1 cut(s)	389
Hpy166II	GTNNAC	1 cut(s)	346
Hpy188I	TCNGA	3 cut(s)	122, 137, 373
Hpy188III	TCNNGA	1 cut(s)	153
Hpy8I	GTNNAC	1 cut(s)	346
HpyAV	CCTTC	3 cut(s)	67, 287, 368
HpyCH4III	ACNGT	1 cut(s)	261
HpyCH4IV	ACGT	2 cut(s)	252, 348
HpyF10VI	GCNNNNNNNGC	1 cut(s)	203
HpySE526I	ACGT	2 cut(s)	252, 348
Hsp92II	CATG	3 cut(s)	277, 283, 519
HspAI	GCGC	1 cut(s)	24
Lsp1109I	GCAGC	3 cut(s)	13, 352, 451
LweI	GCATC	1 cut(s)	193
MaeI	CTAG	1 cut(s)	21
MaeII	ACGT	2 cut(s)	252, 348
MaeIII	GTNAC	4 cut(s)	230, 377, 419, 470
MboII	GAAGA	2 cut(s)	212, 407
MhlI	GDGCHC	1 cut(s)	98
MluCI	AATT	3 cut(s)	9, 74, 173
MmeI	TCCRAC	2 cut(s)	145, 168
MnlI	CCTC	3 cut(s)	75, 151, 379
MseI	TTAA	1 cut(s)	323
MslI	CAYNNNNRTG	1 cut(s)	278
MspI	CCGG	4 cut(s)	85, 100, 125, 411
MspR9I	CCNGG	3 cut(s)	85, 100, 412
MvnI	CGCG	1 cut(s)	437
MwoI	GCNNNNNNNGC	1 cut(s)	203
NciI	CCSGG	3 cut(s)	85, 100, 412
NdeI	CATATG	1 cut(s)	301
NlaIII	CATG	3 cut(s)	277, 283, 519
NlaIV	GGNNCC	3 cut(s)	97, 119, 139
NmuCI	GTSAC	3 cut(s)	230, 377, 470
NspI	RCATGY	1 cut(s)	283
PaeI	GCATGC	1 cut(s)	283
PflMI	CCANNNNNTGG	1 cut(s)	165
PinAI	ACCGGT	1 cut(s)	124
PkrI	GCNGC	3 cut(s)	28, 367, 466
PspEI	GGTNACC	1 cut(s)	377
PspN4I	GGNNCC	3 cut(s)	97, 119, 139
PspPI	GGNCC	2 cut(s)	118, 451
RsaI	GTAC	2 cut(s)	82, 298
RsaNI	GTAC	2 cut(s)	81, 297
RseI	CAYNNNNRTG	1 cut(s)	278
SaqAI	TTAA	1 cut(s)	323
SatI	GCNGC	3 cut(s)	27, 366, 465
Sau96I	GGNCC	2 cut(s)	118, 451
ScrFI	CCNGG	3 cut(s)	85, 100, 412
SduI	GDGCHC	1 cut(s)	98
SetI	ASST	6 cut(s)	143, 255, 298, 351, 379, 489
SfaNI	GCATC	1 cut(s)	193
SinI	GGWCC	1 cut(s)	118
SmiMI	CAYNNNNRTG	1 cut(s)	278
SphI	GCATGC	1 cut(s)	283
Sse9I	AATT	3 cut(s)	9, 74, 173
SsiI	CCGC	1 cut(s)	437
SspMI	CTAG	1 cut(s)	21
StyD4I	CCNGG	3 cut(s)	83, 98, 410
TaaI	ACNGT	1 cut(s)	261
TaiI	ACGT	2 cut(s)	255, 351
TaqI	TCGA	3 cut(s)	72, 152, 393
TasI	AATT	3 cut(s)	9, 74, 173
Tru1I	TTAA	1 cut(s)	323
Tru9I	TTAA	1 cut(s)	323
TseFI	GTSAC	3 cut(s)	230, 377, 470
TseI	GCWGC	3 cut(s)	26, 365, 464
Tsp45I	GTSAC	3 cut(s)	230, 377, 470
TspDTI	ATGAA	1 cut(s)	326
Van91I	CCANNNNNTGG	1 cut(s)	165
VpaK11BI	GGWCC	1 cut(s)	118
XapI	RAATTY	2 cut(s)	74, 173
XceI	RCATGY	1 cut(s)	283
XmiI	GTMKAC	1 cut(s)	345
XspI	CTAG	1 cut(s)	21

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.