Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0014323

Physical Location & Seq

Genomic Coordinates Forward (+)

24472812 .. 24474718

Gene Structure 1907 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom11g21310.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 555 bp

ATGGCATCCAAGCTGTTACTGATTACGGTCTGCATCCTCAATGTCATTGCTTTTGGGCTTGCTGTTGCAGCTGAGCAGAGAAGAAGCTCTGCAAAGGTCGTTCAGGATACTGAGGTGAATTACAACTACTGTGTCTATGAGTCAGACATAGCAACTGGCTACGGGGTTGGTGCATTTTTGTTCTTCTTGGTAGGTCAGGTCATTATAATGGTGGCAAGCCGATGCTTCTGTTGCGGGAAGCCATTGAGGCCTGGAGGGTCAAGAGCCTGGGCAGTTATCCTTTTCATAATCTGCTGGGTATTTTTCTTAATCGCTGAGGTGTGCTTGTTGGCGGGTTCGGTGAGGAATGCATACCACACCAAGTACAGGACCATTTTCAGCGAAAGCCCTCCGGATTGCCAGCAACTAAGAAGGGGAGTTTTCGGTGCAGGGGCAGCCTTCATTTTCCTCACCACAATTGTTTCTGAGTTCTACTATGTTTGCTATTCCAGAGCCAGGGAAAGCTTCCAGCCATACGGGGGAGAGGCTGCTGTTGGTCTCGGAACCTTCAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1218

Protein Analysis

185

Amino Acids

20.25

Weight (kDa)

8.75

Isoelectric Point (pI)

35.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0014323)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G27435
fragaria_vesca	FvH4_3g20620
malus_domestica	MD03G1223600.v1.1 MD11G1241500.v1.1
prunus_persica	Prupe.4G185900_v2.0.a1
pyrus_communis	pycom03g17190 pycom11g21310
rosa_chinensis	RchiOBHm_Chr5g0034641
rosa_laevigata	RLG00000033562
rosa_multiflora	Rmu_sc0002460.1_g000087
rosa_roxburghii	Rroxscaffold_1G00045680
rosa_rugosa	Rorug05G0147400 Rorug05G0147400
rosa_samantha	Rh5AG239400 Rh5BG240100 Rh5DG248300
rosa_wichuraiana	Rw5G021940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	206
AccIII	TCCGGA	1 cut(s)	391
AciI	CCGC	2 cut(s)	234, 332
AfaI	GTAC	1 cut(s)	365
AfiI	CCNNNNNNNGG	3 cut(s)	366, 495, 518
AgsI	TTSAA	1 cut(s)	550
AjnI	CCWGG	3 cut(s)	250, 266, 494
AluBI	AGCT	4 cut(s)	13, 71, 87, 504
AluI	AGCT	4 cut(s)	13, 71, 87, 504
Alw26I	GTCTC	1 cut(s)	542
Aor13HI	TCCGGA	1 cut(s)	391
AoxI	GGCC	1 cut(s)	248
ApeKI	GCWGC	3 cut(s)	68, 434, 527
AspS9I	GGNCC	1 cut(s)	369
AsuHPI	GGTGA	3 cut(s)	127, 352, 442
AvaII	GGWCC	1 cut(s)	369
BaeI	ACNNNNGTAYC	2 cut(s)	99, 132
BbvCI	CCTCAGC	1 cut(s)	315
BbvI	GCAGC	3 cut(s)	80, 446, 514
BciT130I	CCWGG	3 cut(s)	252, 268, 496
BciVI	GTATCC	1 cut(s)	100
BcoDI	GTCTC	1 cut(s)	542
BfuI	GTATCC	1 cut(s)	100
BglI	GCCNNNNNGGC	1 cut(s)	247
BisI	GCNGC	3 cut(s)	69, 435, 528
BlpI	GCTNAGC	1 cut(s)	72
BlsI	GCNGC	3 cut(s)	70, 436, 529
Bme1390I	CCNGG	3 cut(s)	252, 268, 496
Bme18I	GGWCC	1 cut(s)	369
BmgT120I	GGNCC	1 cut(s)	369
BmiI	GGNNCC	1 cut(s)	544
BmrFI	CCNGG	3 cut(s)	252, 268, 496
BmsI	GCATC	3 cut(s)	14, 42, 212
BpmI	CTGGAG	1 cut(s)	273
Bpu10I	CCTNAGC	1 cut(s)	315
Bpu1102I	GCTNAGC	1 cut(s)	72
BsaI	GGTCTC	1 cut(s)	542
BsaJI	CCNNGG	2 cut(s)	267, 495
BsaWI	WCCGGW	1 cut(s)	391
Bsc4I	CCNNNNNNNGG	3 cut(s)	366, 495, 518
Bse1I	ACTGG	1 cut(s)	160
Bse3DI	GCAATG	1 cut(s)	45
BseAI	TCCGGA	1 cut(s)	391
BseBI	CCWGG	3 cut(s)	252, 268, 496
BseDI	CCNNGG	2 cut(s)	267, 495
BseGI	GGATG	2 cut(s)	5, 33
BseLI	CCNNNNNNNGG	3 cut(s)	366, 495, 518
BseMI	GCAATG	1 cut(s)	45
BseMII	CTCAG	4 cut(s)	63, 102, 306, 456
BseNI	ACTGG	1 cut(s)	160
BseXI	GCAGC	3 cut(s)	80, 446, 514
BseYI	CCCAGC	1 cut(s)	294
BsgI	GTGCAG	1 cut(s)	447
BshFI	GGCC	1 cut(s)	250
BsiSI	CCGG	1 cut(s)	392
BslI	CCNNNNNNNGG	3 cut(s)	366, 495, 518
BsmAI	GTCTC	1 cut(s)	542
BsmI	GAATGC	1 cut(s)	352
BsnI	GGCC	1 cut(s)	250
Bso31I	GGTCTC	1 cut(s)	542
Bsp13I	TCCGGA	1 cut(s)	391
Bsp1720I	GCTNAGC	1 cut(s)	72
BspACI	CCGC	2 cut(s)	234, 332
BspANI	GGCC	1 cut(s)	250
BspCNI	CTCAG	4 cut(s)	64, 103, 307, 457
BspEI	TCCGGA	1 cut(s)	391
BspLI	GGNNCC	1 cut(s)	544
BspTNI	GGTCTC	1 cut(s)	542
BsrDI	GCAATG	1 cut(s)	45
BsrI	ACTGG	1 cut(s)	160
BssECI	CCNNGG	2 cut(s)	267, 495
Bst2UI	CCWGG	3 cut(s)	252, 268, 496
Bst4CI	ACNGT	2 cut(s)	28, 131
BstC8I	GCNNGC	3 cut(s)	60, 217, 401
BstDEI	CTNAG	5 cut(s)	72, 111, 315, 407, 465
BstF5I	GGATG	2 cut(s)	5, 33
BstMAI	GTCTC	1 cut(s)	542
BstMWI	GCNNNNNNNGC	4 cut(s)	68, 231, 247, 434
BstNI	CCWGG	3 cut(s)	252, 268, 496
BstSCI	CCNGG	3 cut(s)	250, 266, 494
BstV1I	GCAGC	3 cut(s)	80, 446, 514
BsuI	GTATCC	1 cut(s)	100
BsuRI	GGCC	1 cut(s)	250
BtsCI	GGATG	2 cut(s)	5, 33
Cac8I	GCNNGC	3 cut(s)	60, 217, 401
Cfr13I	GGNCC	1 cut(s)	369
Csp6I	GTAC	1 cut(s)	364
CviQI	GTAC	1 cut(s)	364
DdeI	CTNAG	5 cut(s)	72, 111, 315, 407, 465
Eco147I	AGGCCT	1 cut(s)	250
Eco31I	GGTCTC	1 cut(s)	542
Eco47I	GGWCC	1 cut(s)	369
EcoRII	CCWGG	3 cut(s)	250, 266, 494
EcoT22I	ATGCAT	1 cut(s)	352
FaiI	YATR	7 cut(s)	138, 149, 206, 287, 352, 477, 514
FauI	CCCGC	2 cut(s)	227, 325
Fnu4HI	GCNGC	3 cut(s)	69, 435, 528
FokI	GGATG	1 cut(s)	20
Fsp4HI	GCNGC	3 cut(s)	69, 435, 528
GluI	GCNGC	3 cut(s)	69, 435, 528
GsaI	CCCAGC	1 cut(s)	298
GsuI	CTGGAG	1 cut(s)	273
HaeIII	GGCC	1 cut(s)	250
HapII	CCGG	1 cut(s)	392
HindIII	AAGCTT	1 cut(s)	502
HinfI	GANTC	1 cut(s)	140
HpaII	CCGG	1 cut(s)	392
HphI	GGTGA	3 cut(s)	127, 352, 442
Hpy188I	TCNGA	3 cut(s)	145, 466, 542
Hpy188III	TCNNGA	4 cut(s)	104, 261, 392, 489
HpyAV	CCTTC	2 cut(s)	405, 448
HpyCH4III	ACNGT	2 cut(s)	28, 131
HpyCH4V	TGCA	6 cut(s)	33, 68, 92, 173, 350, 428
HpyF10VI	GCNNNNNNNGC	4 cut(s)	68, 231, 247, 434
HpyF3I	CTNAG	5 cut(s)	72, 111, 315, 407, 465
Kpn2I	TCCGGA	1 cut(s)	391
Lsp1109I	GCAGC	3 cut(s)	80, 446, 514
LweI	GCATC	3 cut(s)	14, 42, 212
MaeIII	GTNAC	1 cut(s)	15
MboII	GAAGA	2 cut(s)	93, 175
MfeI	CAATTG	1 cut(s)	456
MluCI	AATT	2 cut(s)	118, 456
MlyI	GAGTC	1 cut(s)	149
MnlI	CCTC	9 cut(s)	47, 106, 240, 248, 310, 336, 399, 458, 517
Mph1103I	ATGCAT	1 cut(s)	352
MroI	TCCGGA	1 cut(s)	391
MseI	TTAA	1 cut(s)	308
MslI	CAYNNNNRTG	1 cut(s)	206
MspA1I	CMGCKG	1 cut(s)	71
MspI	CCGG	1 cut(s)	392
MspR9I	CCNGG	3 cut(s)	252, 268, 496
MunI	CAATTG	1 cut(s)	456
Mva1269I	GAATGC	1 cut(s)	352
MvaI	CCWGG	3 cut(s)	252, 268, 496
MwoI	GCNNNNNNNGC	4 cut(s)	68, 231, 247, 434
NlaIV	GGNNCC	1 cut(s)	544
NsiI	ATGCAT	1 cut(s)	352
PceI	AGGCCT	1 cut(s)	250
PctI	GAATGC	1 cut(s)	352
PkrI	GCNGC	3 cut(s)	70, 436, 529
PleI	GAGTC	1 cut(s)	148
PpsI	GAGTC	1 cut(s)	148
PsiI	TTATAA	1 cut(s)	206
Psp6I	CCWGG	3 cut(s)	250, 266, 494
PspFI	CCCAGC	1 cut(s)	294
PspGI	CCWGG	3 cut(s)	250, 266, 494
PspN4I	GGNNCC	1 cut(s)	544
PspPI	GGNCC	1 cut(s)	369
PvuII	CAGCTG	1 cut(s)	71
RsaI	GTAC	1 cut(s)	365
RsaNI	GTAC	1 cut(s)	364
RseI	CAYNNNNRTG	1 cut(s)	206
SaqAI	TTAA	1 cut(s)	308
SatI	GCNGC	3 cut(s)	69, 435, 528
Sau96I	GGNCC	1 cut(s)	369
SchI	GAGTC	1 cut(s)	149
ScrFI	CCNGG	3 cut(s)	252, 268, 496
SfaNI	GCATC	3 cut(s)	14, 42, 212
SinI	GGWCC	1 cut(s)	369
SmiMI	CAYNNNNRTG	1 cut(s)	206
Sse9I	AATT	2 cut(s)	118, 456
SseBI	AGGCCT	1 cut(s)	250
SsiI	CCGC	2 cut(s)	234, 332
StuI	AGGCCT	1 cut(s)	250
StyD4I	CCNGG	3 cut(s)	250, 266, 494
TaaI	ACNGT	2 cut(s)	28, 131
TasI	AATT	2 cut(s)	118, 456
TatI	WGTACW	1 cut(s)	363
Tru1I	TTAA	1 cut(s)	308
Tru9I	TTAA	1 cut(s)	308
TseI	GCWGC	3 cut(s)	68, 434, 527
TspDTI	ATGAA	2 cut(s)	274, 430
VpaK11BI	GGWCC	1 cut(s)	369
Zsp2I	ATGCAT	1 cut(s)	352

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.