Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0015097

Physical Location & Seq

Genomic Coordinates Forward (+)

24512381 .. 24515043

Gene Structure 2663 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 714 bp

ATGCCTCACTGTAAGAAGGACAATAAGGTGGATTCTAAATCAAGTAACGGGGCAACCCTTAACGAGCTGGTCGAGCTAAAGAATTGTTCTTCCTGTATGTTTTTTGAGTGCAGGAAGGGGAAAGATCTGTATCTGTGGATGTCAAAGTGTCCCAATGGGCCATCTGTGAAATTCTTAGTCAATGCTGTGCACACGATGGAGGAATTGAAGCTTACAGGAAATCATCTAAAAGGGTCACGGCCTATTTTGACTTTTTCATCCGACTTTGATAAAGATGCCCACTGGAAGCTTCTGAAGGAGATGATCACTCAGATATTTGGCATTCCCAAGGAGCACAGAAAATCTAAACCCTATCATGATCATGTCTTTGTATTCTCTATCGTTGATGACCACATTTGGTTCCGAAACTATCAGATATCTGTTCCTCATAACGAATCGGATAAAATAGCTCGAGGAGGCTTAGATAAAATGACCCTTGTTGAGGTTGGACCACGATTTTGTTTGAATCCGATCAAGATATTTGGTGGCAGCTTTGGAGGTCCAACATTATATGAGAATCCGTTTTACATATCACCCAATCAGATTCGAGCATTGGAGAAAAAGAAGAAGGCTGGGACCTTTGTCAAGAAAGTCAAAGCAAAGACGAGGAGAAAAATGCATGAGCTTGAAAATCCACTGGAGGCTGATGAGTTTTCTGAGATGTGGAAGGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000027 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0016072 GO:0022607 GO:0022613 GO:0022618 GO:0031974 GO:0031981 GO:0034470 GO:0034622 GO:0034641 GO:0034660 GO:0042254 GO:0042255 GO:0042273 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0065003 GO:0070013 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Brix

Protein Analysis

238

Amino Acids

27.34

Weight (kDa)

9.24

Isoelectric Point (pI)

35.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Brix	PF04427	2 - 172	4.8e-41	Brix domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015097)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G52930 AT3G15460
fragaria_vesca	FvH4_3g20570
malus_domestica	MD03G1224000.v1.1 MD11G1241800.v1.1
prunus_persica	Prupe.4G185500_v2.0.a1
pyrus_communis	pycom03g17240 pycom11g21350
rosa_chinensis	RchiOBHm_Chr5g0034581
rosa_laevigata	RLG00000033556
rosa_multiflora	Rmu_sc0003126.1_g000003
rosa_roxburghii	Rroxscaffold_1G00045750
rosa_rugosa	Rorug05G0146600 Rorug05G0146600
rosa_samantha	Rh5CG270000
rosa_wichuraiana	Rw5G021790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	170
AcuI	CTGAAG	1 cut(s)	314
AfiI	CCNNNNNNNGG	1 cut(s)	481
AgsI	TTSAA	3 cut(s)	208, 505, 668
AluBI	AGCT	7 cut(s)	67, 76, 211, 289, 449, 531, 664
AluI	AGCT	7 cut(s)	67, 76, 211, 289, 449, 531, 664
Alw21I	GWGCWC	2 cut(s)	192, 336
Alw44I	GTGCAC	1 cut(s)	188
Ama87I	CYCGRG	1 cut(s)	450
AoxI	GGCC	2 cut(s)	158, 239
ApaLI	GTGCAC	1 cut(s)	188
ApeKI	GCWGC	1 cut(s)	528
ApoI	RAATTY	1 cut(s)	170
ArsI	GACNNNNNNTTYG	2 cut(s)	480, 512
AspS9I	GGNCC	4 cut(s)	158, 488, 539, 615
AsuHPI	GGTGA	1 cut(s)	564
AvaI	CYCGRG	1 cut(s)	450
AvaII	GGWCC	3 cut(s)	488, 539, 615
BaeGI	GKGCMC	1 cut(s)	192
Bbv12I	GWGCWC	2 cut(s)	192, 336
BbvI	GCAGC	1 cut(s)	540
BccI	CCATC	2 cut(s)	169, 190
BceAI	ACGGC	1 cut(s)	254
BclI	TGATCA	2 cut(s)	303, 358
BglII	AGATCT	1 cut(s)	124
BisI	GCNGC	1 cut(s)	529
BlsI	GCNGC	1 cut(s)	530
Bme18I	GGWCC	3 cut(s)	488, 539, 615
BmeT110I	CYCGRG	1 cut(s)	450
BmgT120I	GGNCC	4 cut(s)	158, 488, 539, 615
BmiI	GGNNCC	2 cut(s)	401, 616
BmsI	GCATC	1 cut(s)	265
BoxI	GACNNNNGTC	1 cut(s)	620
BpmI	CTGGAG	1 cut(s)	698
BsaBI	GATNNNNATC	1 cut(s)	129
BsaJI	CCNNGG	1 cut(s)	327
Bsc4I	CCNNNNNNNGG	1 cut(s)	481
Bse1I	ACTGG	2 cut(s)	287, 681
Bse8I	GATNNNNATC	1 cut(s)	129
BseDI	CCNNGG	1 cut(s)	327
BseGI	GGATG	2 cut(s)	144, 257
BseJI	GATNNNNATC	1 cut(s)	129
BseLI	CCNNNNNNNGG	1 cut(s)	481
BseMII	CTCAG	2 cut(s)	323, 687
BseNI	ACTGG	2 cut(s)	287, 681
BseRI	GAGGAG	2 cut(s)	468, 661
BseSI	GKGCMC	1 cut(s)	192
BseXI	GCAGC	1 cut(s)	540
BseYI	CCCAGC	1 cut(s)	611
BsgI	GTGCAG	1 cut(s)	130
BshFI	GGCC	2 cut(s)	160, 241
BsiHKAI	GWGCWC	2 cut(s)	192, 336
BsiHKCI	CYCGRG	1 cut(s)	450
BslFI	GGGAC	2 cut(s)	135, 628
BslI	CCNNNNNNNGG	1 cut(s)	481
BsmFI	GGGAC	2 cut(s)	135, 628
BsmI	GAATGC	1 cut(s)	321
BsnI	GGCC	2 cut(s)	160, 241
BsoBI	CYCGRG	1 cut(s)	450
Bsp1286I	GDGCHC	2 cut(s)	192, 336
Bsp143I	GATC	4 cut(s)	124, 303, 358, 510
BspANI	GGCC	2 cut(s)	160, 241
BspCNI	CTCAG	2 cut(s)	322, 688
BspHI	TCATGA	1 cut(s)	355
BspLI	GGNNCC	2 cut(s)	401, 616
BsrI	ACTGG	2 cut(s)	287, 681
BssECI	CCNNGG	1 cut(s)	327
BssMI	GATC	4 cut(s)	124, 303, 358, 510
BssT1I	CCWWGG	1 cut(s)	327
Bst4CI	ACNGT	1 cut(s)	11
BstDEI	CTNAG	4 cut(s)	175, 309, 460, 696
BstENI	CCTNNNNNAGG	1 cut(s)	479
BstF5I	GGATG	2 cut(s)	144, 257
BstKTI	GATC	4 cut(s)	127, 306, 361, 513
BstMBI	GATC	4 cut(s)	124, 303, 358, 510
BstMWI	GCNNNNNNNGC	1 cut(s)	73
BstPAI	GACNNNNGTC	1 cut(s)	620
BstSLI	GKGCMC	1 cut(s)	192
BstV1I	GCAGC	1 cut(s)	540
BstX2I	RGATCY	1 cut(s)	124
BstYI	RGATCY	1 cut(s)	124
BsuRI	GGCC	2 cut(s)	160, 241
BtsCI	GGATG	2 cut(s)	144, 257
BtsIMutI	CAGTG	3 cut(s)	7, 280, 674
CciI	TCATGA	1 cut(s)	355
Cfr13I	GGNCC	4 cut(s)	158, 488, 539, 615
CviAII	CATG	3 cut(s)	356, 362, 659
DdeI	CTNAG	4 cut(s)	175, 309, 460, 696
DpnI	GATC	4 cut(s)	126, 305, 360, 512
DpnII	GATC	4 cut(s)	124, 303, 358, 510
Eco130I	CCWWGG	1 cut(s)	327
Eco32I	GATATC	1 cut(s)	417
Eco47I	GGWCC	3 cut(s)	488, 539, 615
Eco57I	CTGAAG	1 cut(s)	314
Eco88I	CYCGRG	1 cut(s)	450
EcoNI	CCTNNNNNAGG	1 cut(s)	479
EcoO109I	RGGNCCY	1 cut(s)	615
EcoRV	GATATC	1 cut(s)	417
EcoT14I	CCWWGG	1 cut(s)	327
EcoT22I	ATGCAT	1 cut(s)	660
ErhI	CCWWGG	1 cut(s)	327
FaeI	CATG	3 cut(s)	359, 365, 662
FaiI	YATR	8 cut(s)	98, 357, 363, 429, 550, 552, 569, 660
FaqI	GGGAC	2 cut(s)	135, 628
FatI	CATG	3 cut(s)	355, 361, 658
FbaI	TGATCA	2 cut(s)	303, 358
Fnu4HI	GCNGC	1 cut(s)	529
FokI	GGATG	2 cut(s)	151, 244
Fsp4HI	GCNGC	1 cut(s)	529
GluI	GCNGC	1 cut(s)	529
GsaI	CCCAGC	1 cut(s)	615
GsuI	CTGGAG	1 cut(s)	698
HaeIII	GGCC	2 cut(s)	160, 241
Hin1II	CATG	3 cut(s)	359, 365, 662
HindIII	AAGCTT	2 cut(s)	209, 287
HinfI	GANTC	5 cut(s)	32, 434, 505, 556, 583
HphI	GGTGA	1 cut(s)	564
Hpy166II	GTNNAC	1 cut(s)	190
Hpy188I	TCNGA	9 cut(s)	262, 294, 312, 404, 414, 439, 510, 582, 697
Hpy188III	TCNNGA	3 cut(s)	356, 514, 625
Hpy8I	GTNNAC	1 cut(s)	190
HpyAV	CCTTC	5 cut(s)	10, 109, 289, 601, 700
HpyCH4III	ACNGT	1 cut(s)	11
HpyCH4V	TGCA	3 cut(s)	111, 190, 658
HpyF10VI	GCNNNNNNNGC	1 cut(s)	73
HpyF3I	CTNAG	4 cut(s)	175, 309, 460, 696
Hsp92II	CATG	3 cut(s)	359, 365, 662
Ksp22I	TGATCA	2 cut(s)	303, 358
Kzo9I	GATC	4 cut(s)	124, 303, 358, 510
LmnI	GCTCC	1 cut(s)	331
LpnPI	CCDG	7 cut(s)	53, 97, 106, 201, 268, 597, 662
Lsp1109I	GCAGC	1 cut(s)	540
LweI	GCATC	1 cut(s)	265
MaeIII	GTNAC	2 cut(s)	44, 234
MalI	GATC	4 cut(s)	126, 305, 360, 512
MboI	GATC	4 cut(s)	124, 303, 358, 510
MboII	GAAGA	2 cut(s)	81, 616
MflI	RGATCY	1 cut(s)	124
MhlI	GDGCHC	2 cut(s)	192, 336
MluCI	AATT	3 cut(s)	82, 170, 203
MmeI	TCCRAC	3 cut(s)	285, 466, 566
MnlI	CCTC	9 cut(s)	15, 193, 435, 446, 449, 475, 530, 639, 673
Mph1103I	ATGCAT	1 cut(s)	660
MseI	TTAA	1 cut(s)	60
MslI	CAYNNNNRTG	1 cut(s)	360
Mva1269I	GAATGC	1 cut(s)	321
MwoI	GCNNNNNNNGC	1 cut(s)	73
NdeII	GATC	4 cut(s)	124, 303, 358, 510
NlaIII	CATG	3 cut(s)	359, 365, 662
NlaIV	GGNNCC	2 cut(s)	401, 616
NmuCI	GTSAC	1 cut(s)	234
NsiI	ATGCAT	1 cut(s)	660
PaeR7I	CTCGAG	1 cut(s)	450
PagI	TCATGA	1 cut(s)	355
PcsI	WCGNNNNNNNCGW	1 cut(s)	69
PctI	GAATGC	1 cut(s)	321
PfeI	GAWTC	5 cut(s)	32, 434, 505, 556, 583
PkrI	GCNGC	1 cut(s)	530
PpuMI	RGGWCCY	1 cut(s)	615
PshAI	GACNNNNGTC	1 cut(s)	620
Psp5II	RGGWCCY	1 cut(s)	615
PspFI	CCCAGC	1 cut(s)	611
PspN4I	GGNNCC	2 cut(s)	401, 616
PspPI	GGNCC	4 cut(s)	158, 488, 539, 615
PspPPI	RGGWCCY	1 cut(s)	615
PspXI	VCTCGAGB	1 cut(s)	450
PsuI	RGATCY	1 cut(s)	124
RseI	CAYNNNNRTG	1 cut(s)	360
SaqAI	TTAA	1 cut(s)	60
SatI	GCNGC	1 cut(s)	529
Sau3AI	GATC	4 cut(s)	124, 303, 358, 510
Sau96I	GGNCC	4 cut(s)	158, 488, 539, 615
SduI	GDGCHC	2 cut(s)	192, 336
SfaNI	GCATC	1 cut(s)	265
Sfr274I	CTCGAG	1 cut(s)	450
SinI	GGWCC	3 cut(s)	488, 539, 615
SlaI	CTCGAG	1 cut(s)	450
SmiMI	CAYNNNNRTG	1 cut(s)	360
SmlI	CTYRAG	1 cut(s)	450
SmoI	CTYRAG	1 cut(s)	450
Sse9I	AATT	3 cut(s)	82, 170, 203
StyI	CCWWGG	1 cut(s)	327
TaaI	ACNGT	1 cut(s)	11
TaqI	TCGA	3 cut(s)	72, 451, 586
TasI	AATT	3 cut(s)	82, 170, 203
TfiI	GAWTC	5 cut(s)	32, 434, 505, 556, 583
Tru1I	TTAA	1 cut(s)	60
Tru9I	TTAA	1 cut(s)	60
TscAI	CASTG	3 cut(s)	14, 287, 681
TseFI	GTSAC	1 cut(s)	234
TseI	GCWGC	1 cut(s)	528
Tsp45I	GTSAC	1 cut(s)	234
TspDTI	ATGAA	1 cut(s)	246
TspGWI	ACGGA	1 cut(s)	549
TspRI	CASTG	3 cut(s)	14, 287, 681
VneI	GTGCAC	1 cut(s)	188
VpaK11BI	GGWCC	3 cut(s)	488, 539, 615
XagI	CCTNNNNNAGG	1 cut(s)	479
XapI	RAATTY	1 cut(s)	170
XhoI	CTCGAG	1 cut(s)	450
Zsp2I	ATGCAT	1 cut(s)	660

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.