Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0008633

Physical Location & Seq

Genomic Coordinates Forward (+)

25631552 .. 25636339

Gene Structure 4788 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1125 bp

ATGATTAAAACTATACATTTTAGAGAGGCGCCGAAGTTAAAAAAACGAATGTCCTTTCCTAGTTTCCTTTCATGGTTACCCGCCAAGGGGCCGTTAAGCAAAACCGCCACGCACAGAGCGACCGAGACTCAGAGAATTGAAGGCAAAGCGGCAGTAATGGCGTTTCCGAGAGCCAGACTTTTCACTCTCCCATTTCTTCCTTCACTCTTCTCAACCACTCTCAAACCCTTCCTTCCCATTTCTCCCTTCCTCACTCGTCCTCCGGTCCGTTCACTCGCCGCCCTTGCCTCCGTTTCTGCTTCCGAAACCCAAGACTCACCGGCTCCTCGAAAGACCGGCAAACGGTGGAAGCCCATGTGTTTGTATTACACGCAAGGGAAGTGCACTATGATGGAGGATCCTATGCACATGGAGAAGTTCAATCATAACTGCTCCAGAGATCTTGAAGTGACGAATCCCATGTCAAACAGCATCCGCTTTCAGAACCTAGATTTTTTTCTTGTACTTGATTTAGAGGGAAAAGTTGAAATTCTTGAGTTTCCAGTTCTGATGATTGATGCAAAAACCATGAATGTTGTGGATTTTTTCCACAGATTCGTGAGGCCAACGGAGATGAGCGAGGCAAGAATAAATGAATATATTGAAGGAAAGTATGGCAAATTTGGAGTTGATCGTGTTTGGCATGATACAGCTATACCATTTAAGGATGTTCTTCAACAATTTGAAGCATGGTTAATTCAGCATCAGTTGTGGGGAGAGGAGCTGGGTGGGTGTCTTAATCGAGCAGCATTCGTCACTTGTGGAAACTGGGATTTGAAAACAAAAGTTCCTCAGCAATGCAAAGTGTCAAGGATGAAGCTTCCCTCATATTTTATGGAATGGATCAATATCAAAGATGTCTATCTAAATTTTTACAAGAGAAGGGCCACAGGAATGATGACGATGATGAAGGAACTTCAGATACCATTGTTGGGAAGTCACCATCTTGGATTTGATGACTCAAAGAACATAGCAAGGGTATTACAGCACATGCTCGCTGATGGTGCAGTTATACAGATTAGCGCAAGGAGGAATCCCGATTCTCCTGAGAATGTCGAATTTCTGTTCAAGAACAGAATTAGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004518 GO:0004519 GO:0004521 GO:0004540 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009892 GO:0009987 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0016070 GO:0016441 GO:0016458 GO:0016787 GO:0016788 GO:0016891 GO:0016893 GO:0019219 GO:0019222 GO:0031047 GO:0031323 GO:0034641 GO:0035194 GO:0040029 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0048519 GO:0048583 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060147 GO:0060255 GO:0060966 GO:0060968 GO:0065007 GO:0070920 GO:0071704 GO:0080090 GO:0090065 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0140098 GO:1900368 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RNase_T

Protein Analysis

375

Amino Acids

43.25

Weight (kDa)

9.57

Isoelectric Point (pI)

49.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RNase_T	PF00929	169 - 341	2.4e-09	Exonuclease

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008633)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G15140 AT3G15140
fragaria_vesca	FvH4_3g19250 FvH4_3g19250 FvH4_3g19250 FvH4_3g19250 FvH4_3g19250 FvH4_3g19250 FvH4_3g19250 FvH4_3g19250
malus_domestica	MD11G1255900.v1.1
prunus_persica	Prupe.4G173900_v2.0.a1
pyrus_communis	pycom11g22620
rosa_chinensis	RchiOBHm_Chr5g0032321
rosa_laevigata	RLG00000033385
rosa_roxburghii	Rroxscaffold_1G00048100
rosa_rugosa	Rorug05G0130800 Rorug05G0130900
rosa_samantha	Rh5AG224300 Rh5BG225200 Rh5CG250700 Rh5DG229900
rosa_wichuraiana	Rw5G020490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	28
AciI	CCGC	5 cut(s)	81, 105, 149, 279, 475
AclWI	GGATC	3 cut(s)	392, 405, 890
AcsI	RAATTY	4 cut(s)	528, 659, 907, 1097
AcuI	CTGAAG	1 cut(s)	941
AcyI	GRCGYC	1 cut(s)	29
AfaI	GTAC	1 cut(s)	504
AfiI	CCNNNNNNNGG	4 cut(s)	86, 87, 342, 971
AgsI	TTSAA	9 cut(s)	140, 421, 446, 527, 644, 716, 725, 817, 1108
AluBI	AGCT	3 cut(s)	692, 763, 859
AluI	AGCT	3 cut(s)	692, 763, 859
Alw21I	GWGCWC	1 cut(s)	386
Alw26I	GTCTC	1 cut(s)	119
Alw44I	GTGCAC	1 cut(s)	382
AlwI	GGATC	3 cut(s)	392, 405, 890
AoxI	GGCC	3 cut(s)	89, 602, 924
ApaLI	GTGCAC	1 cut(s)	382
ApeKI	GCWGC	1 cut(s)	785
ApoI	RAATTY	4 cut(s)	528, 659, 907, 1097
ArsI	GACNNNNNNTTYG	2 cut(s)	446, 478
AspLEI	GCGC	2 cut(s)	31, 1064
AspS9I	GGNCC	3 cut(s)	89, 265, 924
AsuHPI	GGTGA	2 cut(s)	309, 971
AvaII	GGWCC	1 cut(s)	265
BaeGI	GKGCMC	1 cut(s)	386
BaeI	ACNNNNGTAYC	2 cut(s)	953, 986
BamHI	GGATCC	1 cut(s)	397
BanI	GGYRCC	1 cut(s)	28
Bbv12I	GWGCWC	1 cut(s)	386
BbvCI	CCTCAGC	1 cut(s)	831
BbvI	GCAGC	1 cut(s)	797
BccI	CCATC	3 cut(s)	385, 990, 1034
BceAI	ACGGC	1 cut(s)	76
BcoDI	GTCTC	1 cut(s)	119
BfaI	CTAG	2 cut(s)	60, 488
BfoI	RGCGCY	1 cut(s)	32
BglII	AGATCT	1 cut(s)	439
BisI	GCNGC	3 cut(s)	150, 279, 786
BlsI	GCNGC	3 cut(s)	151, 280, 787
Bme18I	GGWCC	1 cut(s)	265
BmgT120I	GGNCC	3 cut(s)	89, 265, 924
BmiI	GGNNCC	4 cut(s)	30, 90, 324, 399
BmrI	ACTGGG	1 cut(s)	817
BmsI	GCATC	3 cut(s)	480, 547, 751
BmuI	ACTGGG	1 cut(s)	817
BpmI	CTGGAG	1 cut(s)	418
Bpu10I	CCTNAGC	1 cut(s)	831
BpuEI	CTTGAG	1 cut(s)	554
BsaBI	GATNNNNATC	2 cut(s)	887, 900
BsaHI	GRCGYC	1 cut(s)	29
BsaJI	CCNNGG	1 cut(s)	84
BsaWI	WCCGGW	1 cut(s)	262
BsaXI	ACNNNNNCTCC	2 cut(s)	244, 274
Bsc4I	CCNNNNNNNGG	4 cut(s)	86, 87, 342, 971
Bse118I	RCCGGY	2 cut(s)	319, 335
Bse1I	ACTGG	2 cut(s)	542, 812
Bse3DI	GCAATG	1 cut(s)	842
Bse8I	GATNNNNATC	2 cut(s)	887, 900
BseDI	CCNNGG	1 cut(s)	84
BseGI	GGATG	3 cut(s)	471, 712, 858
BseJI	GATNNNNATC	2 cut(s)	887, 900
BseLI	CCNNNNNNNGG	4 cut(s)	86, 87, 342, 971
BseMI	GCAATG	1 cut(s)	842
BseMII	CTCAG	3 cut(s)	143, 845, 1077
BseNI	ACTGG	2 cut(s)	542, 812
BseRI	GAGGAG	2 cut(s)	315, 773
BseSI	GKGCMC	1 cut(s)	386
BseXI	GCAGC	1 cut(s)	797
BseYI	CCCAGC	1 cut(s)	763
BsgI	GTGCAG	1 cut(s)	1065
Bsh1285I	CGRYCG	1 cut(s)	123
BshFI	GGCC	3 cut(s)	91, 604, 926
BshNI	GGYRCC	1 cut(s)	28
BsiEI	CGRYCG	1 cut(s)	123
BsiHKAI	GWGCWC	1 cut(s)	386
BsiSI	CCGG	3 cut(s)	263, 320, 336
BslI	CCNNNNNNNGG	4 cut(s)	86, 87, 342, 971
BsmAI	GTCTC	1 cut(s)	119
BsmI	GAATGC	1 cut(s)	788
BsnI	GGCC	3 cut(s)	91, 604, 926
Bsp1286I	GDGCHC	1 cut(s)	386
Bsp143I	GATC	4 cut(s)	397, 439, 670, 882
BspACI	CCGC	5 cut(s)	81, 105, 149, 279, 475
BspANI	GGCC	3 cut(s)	91, 604, 926
BspCNI	CTCAG	3 cut(s)	142, 844, 1078
BspLI	GGNNCC	4 cut(s)	30, 90, 324, 399
BspPI	GGATC	3 cut(s)	392, 405, 890
BspT107I	GGYRCC	1 cut(s)	28
BsrDI	GCAATG	1 cut(s)	842
BsrFI	RCCGGY	2 cut(s)	319, 335
BsrI	ACTGG	2 cut(s)	542, 812
BssAI	RCCGGY	2 cut(s)	319, 335
BssECI	CCNNGG	1 cut(s)	84
BssMI	GATC	4 cut(s)	397, 439, 670, 882
BssNI	GRCGYC	1 cut(s)	29
BssT1I	CCWWGG	1 cut(s)	84
Bst4CI	ACNGT	1 cut(s)	345
Bst6I	CTCTTC	1 cut(s)	212
BstACI	GRCGYC	1 cut(s)	29
BstC8I	GCNNGC	1 cut(s)	1035
BstDEI	CTNAG	3 cut(s)	129, 831, 1086
BstEII	GGTNACC	1 cut(s)	75
BstF5I	GGATG	3 cut(s)	471, 712, 858
BstH2I	RGCGCY	1 cut(s)	32
BstHHI	GCGC	2 cut(s)	31, 1064
BstKTI	GATC	4 cut(s)	400, 442, 673, 885
BstMAI	GTCTC	1 cut(s)	119
BstMBI	GATC	4 cut(s)	397, 439, 670, 882
BstMCI	CGRYCG	1 cut(s)	123
BstMWI	GCNNNNNNNGC	3 cut(s)	158, 284, 1043
BstNSI	RCATGY	1 cut(s)	1033
BstPI	GGTNACC	1 cut(s)	75
BstSLI	GKGCMC	1 cut(s)	386
BstV1I	GCAGC	1 cut(s)	797
BstX2I	RGATCY	2 cut(s)	397, 439
BstYI	RGATCY	2 cut(s)	397, 439
BsuRI	GGCC	3 cut(s)	91, 604, 926
BtsCI	GGATG	3 cut(s)	471, 712, 858
Cac8I	GCNNGC	1 cut(s)	1035
CfoI	GCGC	2 cut(s)	31, 1064
Cfr10I	RCCGGY	2 cut(s)	319, 335
Cfr13I	GGNCC	3 cut(s)	89, 265, 924
CpoI	CGGWCCG	1 cut(s)	265
Csp6I	GTAC	1 cut(s)	503
CspI	CGGWCCG	1 cut(s)	265
CviAII	CATG	8 cut(s)	72, 355, 409, 460, 568, 683, 729, 1030
CviJI	RGCY	9 cut(s)	91, 173, 323, 352, 604, 692, 763, 859, 926
CviKI_1	RGCY	9 cut(s)	91, 173, 323, 352, 604, 692, 763, 859, 926
CviQI	GTAC	1 cut(s)	503
DdeI	CTNAG	3 cut(s)	129, 831, 1086
DinI	GGCGCC	1 cut(s)	30
DpnI	GATC	4 cut(s)	399, 441, 672, 884
DpnII	GATC	4 cut(s)	397, 439, 670, 882
Eam1104I	CTCTTC	1 cut(s)	212
EarI	CTCTTC	1 cut(s)	212
Eco130I	CCWWGG	1 cut(s)	84
Eco47I	GGWCC	1 cut(s)	265
Eco57I	CTGAAG	1 cut(s)	941
Eco91I	GGTNACC	1 cut(s)	75
EcoO65I	GGTNACC	1 cut(s)	75
EcoT14I	CCWWGG	1 cut(s)	84
EgeI	GGCGCC	1 cut(s)	30
EheI	GGCGCC	1 cut(s)	30
ErhI	CCWWGG	1 cut(s)	84
FaeI	CATG	8 cut(s)	75, 358, 412, 463, 571, 686, 732, 1033
FatI	CATG	8 cut(s)	71, 354, 408, 459, 567, 682, 728, 1029
FauI	CCCGC	1 cut(s)	88
Fnu4HI	GCNGC	3 cut(s)	150, 279, 786
FokI	GGATG	3 cut(s)	458, 719, 865
Fsp4HI	GCNGC	3 cut(s)	150, 279, 786
FspBI	CTAG	2 cut(s)	60, 488
GlaI	GCGC	2 cut(s)	30, 1063
GluI	GCNGC	3 cut(s)	150, 279, 786
GsaI	CCCAGC	1 cut(s)	767
GsuI	CTGGAG	1 cut(s)	418
HaeII	RGCGCY	1 cut(s)	32
HaeIII	GGCC	3 cut(s)	91, 604, 926
HapII	CCGG	3 cut(s)	263, 320, 336
HhaI	GCGC	2 cut(s)	31, 1064
Hin1I	GRCGYC	1 cut(s)	29
Hin1II	CATG	8 cut(s)	75, 358, 412, 463, 571, 686, 732, 1033
Hin6I	GCGC	2 cut(s)	29, 1062
HinP1I	GCGC	2 cut(s)	29, 1062
HindIII	AAGCTT	1 cut(s)	857
HinfI	GANTC	7 cut(s)	127, 314, 454, 594, 998, 1072, 1079
HpaII	CCGG	3 cut(s)	263, 320, 336
HphI	GGTGA	2 cut(s)	309, 971
Hpy166II	GTNNAC	2 cut(s)	272, 384
Hpy188I	TCNGA	6 cut(s)	132, 168, 304, 483, 549, 960
Hpy188III	TCNNGA	7 cut(s)	435, 443, 533, 598, 1076, 1085, 1108
Hpy8I	GTNNAC	2 cut(s)	272, 384
HpyAV	CCTTC	8 cut(s)	134, 210, 238, 242, 256, 638, 915, 943
HpyCH4III	ACNGT	1 cut(s)	345
HpyCH4V	TGCA	5 cut(s)	384, 406, 560, 840, 1046
HpyF10VI	GCNNNNNNNGC	3 cut(s)	158, 284, 1043
HpyF3I	CTNAG	3 cut(s)	129, 831, 1086
Hsp92I	GRCGYC	1 cut(s)	29
Hsp92II	CATG	8 cut(s)	75, 358, 412, 463, 571, 686, 732, 1033
HspAI	GCGC	2 cut(s)	29, 1062
KasI	GGCGCC	1 cut(s)	28
Kzo9I	GATC	4 cut(s)	397, 439, 670, 882
LmnI	GCTCC	3 cut(s)	328, 437, 760
Lsp1109I	GCAGC	1 cut(s)	797
LweI	GCATC	3 cut(s)	480, 547, 751
MaeI	CTAG	2 cut(s)	60, 488
MaeIII	GTNAC	4 cut(s)	75, 448, 793, 977
MalI	GATC	4 cut(s)	399, 441, 672, 884
MboI	GATC	4 cut(s)	397, 439, 670, 882
MboII	GAAGA	3 cut(s)	188, 199, 704
MflI	RGATCY	2 cut(s)	397, 439
MhlI	GDGCHC	1 cut(s)	386
MluCI	AATT	8 cut(s)	135, 528, 659, 719, 735, 907, 1097, 1116
Mly113I	GGCGCC	1 cut(s)	29
MlyI	GAGTC	3 cut(s)	121, 308, 992
MseI	TTAA	6 cut(s)	6, 38, 95, 702, 734, 777
MslI	CAYNNNNRTG	2 cut(s)	389, 932
MspI	CCGG	3 cut(s)	263, 320, 336
Mva1269I	GAATGC	1 cut(s)	788
MwoI	GCNNNNNNNGC	3 cut(s)	158, 284, 1043
NarI	GGCGCC	1 cut(s)	29
NdeII	GATC	4 cut(s)	397, 439, 670, 882
NlaIII	CATG	8 cut(s)	75, 358, 412, 463, 571, 686, 732, 1033
NlaIV	GGNNCC	4 cut(s)	30, 90, 324, 399
NmuCI	GTSAC	3 cut(s)	448, 793, 977
NspI	RCATGY	1 cut(s)	1033
PcsI	WCGNNNNNNNCGW	1 cut(s)	116
PctI	GAATGC	1 cut(s)	788
PfeI	GAWTC	4 cut(s)	454, 594, 1072, 1079
PkrI	GCNGC	3 cut(s)	151, 280, 787
PleI	GAGTC	3 cut(s)	121, 308, 992
PluTI	GGCGCC	1 cut(s)	32
PpsI	GAGTC	3 cut(s)	121, 308, 992
PspEI	GGTNACC	1 cut(s)	75
PspFI	CCCAGC	1 cut(s)	763
PspN4I	GGNNCC	4 cut(s)	30, 90, 324, 399
PspPI	GGNCC	3 cut(s)	89, 265, 924
PsrI	GAACNNNNNNTAC	2 cut(s)	945, 977
PsuI	RGATCY	2 cut(s)	397, 439
RsaI	GTAC	1 cut(s)	504
RsaNI	GTAC	1 cut(s)	503
RseI	CAYNNNNRTG	2 cut(s)	389, 932
Rsr2I	CGGWCCG	1 cut(s)	265
RsrII	CGGWCCG	1 cut(s)	265
SaqAI	TTAA	6 cut(s)	6, 38, 95, 702, 734, 777
SatI	GCNGC	3 cut(s)	150, 279, 786
Sau3AI	GATC	4 cut(s)	397, 439, 670, 882
Sau96I	GGNCC	3 cut(s)	89, 265, 924
SchI	GAGTC	3 cut(s)	121, 308, 992
SduI	GDGCHC	1 cut(s)	386
SetI	ASST	5 cut(s)	489, 694, 765, 861, 1124
SfaNI	GCATC	3 cut(s)	480, 547, 751
SfoI	GGCGCC	1 cut(s)	30
SinI	GGWCC	1 cut(s)	265
SmiMI	CAYNNNNRTG	2 cut(s)	389, 932
SmlI	CTYRAG	1 cut(s)	533
SmoI	CTYRAG	1 cut(s)	533
Sse9I	AATT	8 cut(s)	135, 528, 659, 719, 735, 907, 1097, 1116
SsiI	CCGC	5 cut(s)	81, 105, 149, 279, 475
SspDI	GGCGCC	1 cut(s)	28
SspMI	CTAG	2 cut(s)	60, 488
StyI	CCWWGG	1 cut(s)	84
TaaI	ACNGT	1 cut(s)	345
TaqI	TCGA	3 cut(s)	328, 781, 1095
TaqII	GACCGA	1 cut(s)	137
TasI	AATT	8 cut(s)	135, 528, 659, 719, 735, 907, 1097, 1116
TatI	WGTACW	1 cut(s)	502
TauI	GCSGC	2 cut(s)	152, 281
TfiI	GAWTC	4 cut(s)	454, 594, 1072, 1079
Tru1I	TTAA	6 cut(s)	6, 38, 95, 702, 734, 777
Tru9I	TTAA	6 cut(s)	6, 38, 95, 702, 734, 777
TseFI	GTSAC	3 cut(s)	448, 793, 977
TseI	GCWGC	1 cut(s)	785
Tsp45I	GTSAC	3 cut(s)	448, 793, 977
TspDTI	ATGAA	5 cut(s)	60, 584, 648, 869, 962
TspGWI	ACGGA	3 cut(s)	257, 280, 623
VneI	GTGCAC	1 cut(s)	382
VpaK11BI	GGWCC	1 cut(s)	265
XapI	RAATTY	4 cut(s)	528, 659, 907, 1097
XceI	RCATGY	1 cut(s)	1033
XcmI	CCANNNNNNNNNTGG	1 cut(s)	574
XspI	CTAG	2 cut(s)	60, 488

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.