pycom11g23350

Belongs to the SecY SEC61-alpha family

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
Physical Location & Seq
Reverse (-)
26368954 .. 26371490
2537 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1431 bp
ATGGGAGGAGGATTTCGAGTTCTTCACTTGGTCAGACCGTTTCTGTCATTTCTGCCCGAAGTTCAGAGCGCTGACCGGAAAGTTCCATTCAGAGAGAAGGTGATATACACCGTTATCTCGCTGTTCATTTTCTTGGTGTGCAGCCAGCTCCCTCTGTATGGCATACACTCTACCACGGGGGCAGATCCCTTCTATTGGATGCGTGTTATCCTCGCTTCCAACCGCGGGACTGTCATGGAGCTTGGGATCACCCCAATTGTCACATCTGGGCTGGTGATGCAACTCCTTGCTGGGTCTAAGATTATTGAAGTTGACAACAATGTACGCGAAGATCGTGCTCTTTTAAATGGAGCACAGAAGTTATTGGGTATCCTGATAGCTATTGGTGAGGCAGTTGCGTATGTTCTCTCTGGCATGTATGGTAGTGTTGGCCAACTTGGAGTTGGAAATGCCATTTTAATTATCATTCAGCTCTGCTTTGCCGGTATCATTGTGATATGTTTGGATGAACTTCTTCAGAAGGGATATGGTCTAGGCTCTGGAATTTCACTTTTCATTGCCACCAATATCTGTGAAAACATTATCTGGAAAGCATTTAGCCCTACCACAATCAACAGTGGGCGAGGAGCTGAATTTGAAGGTGCTGTTATTGCCCTGTTCCATCTTCTGATTACTCGAACAGATAAGGTTCGAGCTCTCCGGGAGGCCTTCTACCGGCAGAATCTACCGAACGTGACAAATCTGCTAGCCACAGTGTTGATCTTCCTTATAGTAATTTATTTCCAAGGGTTCCGCGTGGTTCTGCCTGTGAGATCAAAGAATGCTCGTGGACAGCAGGGTTCCTATCCTATCAAGCTGTTCTATACCTCCAACATGCCCATCATTTTGCAGTCTGCACTTGTGTCCAACCTTTACTTCATCTCCCAGTTGCTCTACAGGAGGTACAGCGGAAATTTCCTAGTGAATCTTTTGGGCAAATGGAAGGAATCTGAATATTCAGGAGGGCAATTCGTTCCCGTTGGTGGTCTAGCATATTATATCACTGCACCTTCTAGCTTGGCTGATATGGCAGCCAATCCCTTCCATGCACTGTTCTATCTCATATTTATGTTGACTGCCTGTGCACTTTTCTCAAAAACATGGATTGAAGTTTCTGGATCATCTGCCAAAGATGTCGCCAAGCAGCTCAAGGAACAACAAATGGTCATGCCGGGTCACCGTGAGTCAAACTTGCAGAAGGAGTTGAACCGCTACATTCCCACAGCTGCTGCTTTCGGAGGCATGTGCATCGGTGCACTCACAGTGTTGGCCGATTTCATGGGGGCAATTGGTTCAGGGACCGGAATCTTGCTTGCGGTGACAATCATCTATCAGTACTTCGAGACATTTGAGAAAGAGAGAGCCAGTGAGCTCGGTTTCTTTGGTTTCTAG

Protein Analysis

477

Amino Acids

52.3

Weight (kDa)

9.06

Isoelectric Point (pI)

31.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Plug_translocon PF10559 42 - 76 1.1e-17 Plug domain of Sec61p
SecY PF00344 77 - 460 5e-81 SecY
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0010749)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 3 cut(s) 225, 327, 795
AciI CCGC 6 cut(s) 223, 225, 793, 948, 1249, 1355
AclWI GGATC 3 cut(s) 179, 254, 1165
AcoI YGGCCR 2 cut(s) 430, 1308
AcsI RAATTY 3 cut(s) 543, 632, 952
AcuI CTGAAG 1 cut(s) 500
AfaI GTAC 3 cut(s) 324, 944, 1376
AfeI AGCGCT 1 cut(s) 70
AfiI CCNNNNNNNGG 5 cut(s) 158, 195, 225, 714, 1022
AgsI TTSAA 4 cut(s) 308, 638, 1148, 1246
AjuI GAANNNNNNNTTGG 2 cut(s) 899, 931
AloI GAACNNNNNNTCC 1 cut(s) 35
Alw21I GWGCWC 6 cut(s) 340, 355, 697, 1126, 1297, 1413
Alw26I GTCTC 1 cut(s) 1376
Alw44I GTGCAC 2 cut(s) 1122, 1293
AlwI GGATC 3 cut(s) 179, 254, 1165
AlwNI CAGNNNCTG 1 cut(s) 1268
Aor51HI AGCGCT 1 cut(s) 70
AoxI GGCC 3 cut(s) 430, 705, 1308
ApaLI GTGCAC 2 cut(s) 1122, 1293
ApeKI GCWGC 5 cut(s) 141, 1070, 1183, 1265, 1268
ApoI RAATTY 3 cut(s) 543, 632, 952
Asp700I GAANNNNTTC 1 cut(s) 513
AspLEI GCGC 1 cut(s) 71
AspS9I GGNCC 1 cut(s) 1338
AsuC2I CCSGG 2 cut(s) 701, 1212
AsuHPI GGTGA 6 cut(s) 112, 241, 286, 398, 1208, 1369
AsuNHI GCTAGC 1 cut(s) 745
AvaII GGWCC 1 cut(s) 1338
BaeGI GKGCMC 2 cut(s) 1126, 1297
BalI TGGCCA 1 cut(s) 432
BanII GRGCYC 2 cut(s) 697, 1413
BarI GAAGNNNNNNTAC 2 cut(s) 89, 121
BauI CACGAG 1 cut(s) 825
Bbv12I GWGCWC 6 cut(s) 340, 355, 697, 1126, 1297, 1413
BbvI GCAGC 5 cut(s) 153, 1082, 1195, 1252, 1255
BccI CCATC 2 cut(s) 669, 887
BcgI CGANNNNNNTGC 4 cut(s) 317, 351, 1270, 1304
BciVI GTATCC 1 cut(s) 380
BcnI CCSGG 2 cut(s) 701, 1212
BcoDI GTCTC 1 cut(s) 1376
BfaI CTAG 6 cut(s) 533, 746, 959, 1028, 1053, 1429
BfmI CTRYAG 1 cut(s) 934
BfoI RGCGCY 1 cut(s) 72
BfuI GTATCC 1 cut(s) 380
BisI GCNGC 5 cut(s) 142, 1071, 1184, 1266, 1269
BlsI GCNGC 5 cut(s) 143, 1072, 1185, 1267, 1270
BmcAI AGTACT 1 cut(s) 1376
Bme1390I CCNGG 2 cut(s) 701, 1212
Bme18I GGWCC 1 cut(s) 1338
BmgT120I GGNCC 1 cut(s) 1338
BmiI GGNNCC 3 cut(s) 791, 841, 1339
BmrFI CCNGG 2 cut(s) 701, 1212
BmrI ACTGGG 1 cut(s) 919
BmsI GCATC 3 cut(s) 189, 267, 1296
BmtI GCTAGC 1 cut(s) 749
BmuI ACTGGG 1 cut(s) 919
BpuEI CTTGAG 1 cut(s) 1172
BpuMI CCSGG 2 cut(s) 701, 1212
BsaJI CCNNGG 3 cut(s) 174, 223, 784
BsaWI WCCGGW 2 cut(s) 75, 1340
BsaXI ACNNNNNCTCC 2 cut(s) 905, 935
Bsc4I CCNNNNNNNGG 5 cut(s) 158, 195, 225, 714, 1022
Bse118I RCCGGY 2 cut(s) 482, 714
Bse1I ACTGG 2 cut(s) 925, 1404
Bse3DI GCAATG 1 cut(s) 555
BseDI CCNNGG 3 cut(s) 174, 223, 784
BseGI GGATG 2 cut(s) 204, 511
BseLI CCNNNNNNNGG 5 cut(s) 158, 195, 225, 714, 1022
BseMI GCAATG 1 cut(s) 555
BseNI ACTGG 2 cut(s) 925, 1404
BseRI GAGGAG 2 cut(s) 21, 639
BseSI GKGCMC 2 cut(s) 1126, 1297
BseXI GCAGC 5 cut(s) 153, 1082, 1195, 1252, 1255
BseYI CCCAGC 1 cut(s) 290
BsgI GTGCAG 3 cut(s) 160, 879, 1029
Bsh1236I CGCG 3 cut(s) 225, 327, 795
BshFI GGCC 3 cut(s) 432, 707, 1310
BsiHKAI GWGCWC 6 cut(s) 340, 355, 697, 1126, 1297, 1413
BsiSI CCGG 6 cut(s) 76, 483, 700, 715, 1211, 1341
BslFI GGGAC 2 cut(s) 241, 1351
BslI CCNNNNNNNGG 5 cut(s) 158, 195, 225, 714, 1022
BsmAI GTCTC 1 cut(s) 1376
BsmFI GGGAC 2 cut(s) 241, 1351
BsmI GAATGC 1 cut(s) 826
BsnI GGCC 3 cut(s) 432, 707, 1310
Bsp1286I GDGCHC 6 cut(s) 340, 355, 697, 1126, 1297, 1413
Bsp143I GATC 6 cut(s) 184, 246, 331, 759, 812, 1157
BspACI CCGC 6 cut(s) 223, 225, 793, 948, 1249, 1355
BspANI GGCC 3 cut(s) 432, 707, 1310
BspFNI CGCG 3 cut(s) 225, 327, 795
BspLI GGNNCC 3 cut(s) 791, 841, 1339
BspOI GCTAGC 1 cut(s) 749
BspPI GGATC 3 cut(s) 179, 254, 1165
BsrDI GCAATG 1 cut(s) 555
BsrFI RCCGGY 2 cut(s) 482, 714
BsrI ACTGG 2 cut(s) 925, 1404
BssAI RCCGGY 2 cut(s) 482, 714
BssECI CCNNGG 3 cut(s) 174, 223, 784
BssMI GATC 6 cut(s) 184, 246, 331, 759, 812, 1157
BssSI CACGAG 1 cut(s) 825
BssT1I CCWWGG 1 cut(s) 784
Bst2BI CACGAG 1 cut(s) 825
Bst4CI ACNGT 8 cut(s) 39, 112, 232, 617, 754, 1092, 1220, 1303
BstC8I GCNNGC 3 cut(s) 146, 747, 1353
BstDEI CTNAG 1 cut(s) 297
BstDSI CCRYGG 2 cut(s) 174, 223
BstEII GGTNACC 1 cut(s) 1214
BstF5I GGATG 2 cut(s) 204, 511
BstFNI CGCG 3 cut(s) 225, 327, 795
BstH2I RGCGCY 1 cut(s) 72
BstHHI GCGC 1 cut(s) 71
BstKTI GATC 6 cut(s) 187, 249, 334, 762, 815, 1160
BstMAI GTCTC 1 cut(s) 1376
BstMBI GATC 6 cut(s) 184, 246, 331, 759, 812, 1157
BstMWI GCNNNNNNNGC 3 cut(s) 277, 650, 1067
BstNSI RCATGY 3 cut(s) 418, 877, 1285
BstPI GGTNACC 1 cut(s) 1214
BstSCI CCNGG 2 cut(s) 699, 1210
BstSFI CTRYAG 1 cut(s) 934
BstSLI GKGCMC 2 cut(s) 1126, 1297
BstUI CGCG 3 cut(s) 225, 327, 795
BstV1I GCAGC 5 cut(s) 153, 1082, 1195, 1252, 1255
BstX2I RGATCY 1 cut(s) 184
BstYI RGATCY 1 cut(s) 184
BsuI GTATCC 1 cut(s) 380
BsuRI GGCC 3 cut(s) 432, 707, 1310
BtgI CCRYGG 2 cut(s) 174, 223
BtsCI GGATG 2 cut(s) 204, 511
BtsI GCAGTG 1 cut(s) 1041
BtsIMutI CAGTG 6 cut(s) 622, 759, 1041, 1088, 1308, 1411
Cac8I GCNNGC 3 cut(s) 146, 747, 1353
CaiI CAGNNNCTG 1 cut(s) 1268
CfoI GCGC 1 cut(s) 71
Cfr10I RCCGGY 2 cut(s) 482, 714
Cfr13I GGNCC 1 cut(s) 1338
Cfr42I CCGCGG 1 cut(s) 226
Csp6I GTAC 3 cut(s) 323, 943, 1375
CviAII CATG 8 cut(s) 235, 415, 874, 1085, 1140, 1207, 1282, 1318
CviQI GTAC 3 cut(s) 323, 943, 1375
DdeI CTNAG 1 cut(s) 297
DpnI GATC 6 cut(s) 186, 248, 333, 761, 814, 1159
DpnII GATC 6 cut(s) 184, 246, 331, 759, 812, 1157
DraI TTTAAA 1 cut(s) 345
EaeI YGGCCR 2 cut(s) 430, 1308
Ecl136II GAGCTC 2 cut(s) 695, 1411
Eco130I CCWWGG 1 cut(s) 784
Eco147I AGGCCT 1 cut(s) 707
Eco24I GRGCYC 2 cut(s) 697, 1413
Eco47I GGWCC 1 cut(s) 1338
Eco47III AGCGCT 1 cut(s) 70
Eco53kI GAGCTC 2 cut(s) 695, 1411
Eco57I CTGAAG 1 cut(s) 500
Eco91I GGTNACC 1 cut(s) 1214
EcoICRI GAGCTC 2 cut(s) 695, 1411
EcoO65I GGTNACC 1 cut(s) 1214
EcoT14I CCWWGG 1 cut(s) 784
EcoT38I GRGCYC 2 cut(s) 697, 1413
ErhI CCWWGG 1 cut(s) 784
FaeI CATG 8 cut(s) 238, 418, 877, 1088, 1143, 1210, 1285, 1321
FaqI GGGAC 2 cut(s) 241, 1351
FatI CATG 8 cut(s) 234, 414, 873, 1084, 1139, 1206, 1281, 1317
FauI CCCGC 1 cut(s) 218
Fnu4HI GCNGC 5 cut(s) 142, 1071, 1184, 1266, 1269
FokI GGATG 2 cut(s) 211, 518
FriOI GRGCYC 2 cut(s) 697, 1413
Fsp4HI GCNGC 5 cut(s) 142, 1071, 1184, 1266, 1269
FspBI CTAG 6 cut(s) 533, 746, 959, 1028, 1053, 1429
GlaI GCGC 1 cut(s) 70
GluI GCNGC 5 cut(s) 142, 1071, 1184, 1266, 1269
GsaI CCCAGC 1 cut(s) 294
HaeII RGCGCY 1 cut(s) 72
HaeIII GGCC 3 cut(s) 432, 707, 1310
HapII CCGG 6 cut(s) 76, 483, 700, 715, 1211, 1341
HhaI GCGC 1 cut(s) 71
Hin1II CATG 8 cut(s) 238, 418, 877, 1088, 1143, 1210, 1285, 1321
Hin6I GCGC 1 cut(s) 69
HinP1I GCGC 1 cut(s) 69
HincII GTYRAC 2 cut(s) 313, 1113
HindII GTYRAC 2 cut(s) 313, 1113
HinfI GANTC 5 cut(s) 721, 964, 986, 1223, 1344
HpaII CCGG 6 cut(s) 76, 483, 700, 715, 1211, 1341
HphI GGTGA 6 cut(s) 112, 241, 286, 398, 1208, 1369
Hpy166II GTNNAC 5 cut(s) 313, 830, 1113, 1124, 1295
Hpy188I TCNGA 7 cut(s) 35, 66, 92, 519, 669, 991, 1277
Hpy188III TCNNGA 6 cut(s) 373, 540, 586, 999, 1155, 1381
Hpy8I GTNNAC 5 cut(s) 313, 830, 1113, 1124, 1295
HpyAV CCTTC 9 cut(s) 91, 199, 514, 632, 718, 976, 1059, 1090, 1231
HpyCH4III ACNGT 8 cut(s) 39, 112, 232, 617, 754, 1092, 1220, 1303
HpyCH4IV ACGT 1 cut(s) 732
HpyF10VI GCNNNNNNNGC 3 cut(s) 277, 650, 1067
HpyF3I CTNAG 1 cut(s) 297
HpySE526I ACGT 1 cut(s) 732
Hsp92II CATG 8 cut(s) 238, 418, 877, 1088, 1143, 1210, 1285, 1321
HspAI GCGC 1 cut(s) 69
KspI CCGCGG 1 cut(s) 226
Kzo9I GATC 6 cut(s) 184, 246, 331, 759, 812, 1157
LmnI GCTCC 4 cut(s) 153, 238, 350, 626
Lsp1109I GCAGC 5 cut(s) 153, 1082, 1195, 1252, 1255
LweI GCATC 3 cut(s) 189, 267, 1296
MaeI CTAG 6 cut(s) 533, 746, 959, 1028, 1053, 1429
MaeII ACGT 1 cut(s) 732
MaeIII GTNAC 4 cut(s) 259, 733, 1214, 1357
MalI GATC 6 cut(s) 186, 248, 333, 761, 814, 1159
MboI GATC 6 cut(s) 184, 246, 331, 759, 812, 1157
MboII GAAGA 5 cut(s) 14, 341, 506, 656, 754
MfeI CAATTG 2 cut(s) 255, 1326
MflI RGATCY 1 cut(s) 184
MhlI GDGCHC 6 cut(s) 340, 355, 697, 1126, 1297, 1413
MlsI TGGCCA 1 cut(s) 432
MluCI AATT 8 cut(s) 255, 459, 543, 632, 774, 952, 1007, 1326
MluNI TGGCCA 1 cut(s) 432
MlyI GAGTC 1 cut(s) 1232
MmeI TCCRAC 4 cut(s) 243, 424, 894, 930
MnlI CCTC 9 cut(s) 162, 221, 382, 617, 697, 877, 933, 995, 1271
Mox20I TGGCCA 1 cut(s) 432
MroXI GAANNNNTTC 1 cut(s) 513
MscI TGGCCA 1 cut(s) 432
MseI TTAA 2 cut(s) 344, 458
MslI CAYNNNNRTG 1 cut(s) 1106
Msp20I TGGCCA 1 cut(s) 432
MspA1I CMGCKG 3 cut(s) 225, 948, 1265
MspI CCGG 6 cut(s) 76, 483, 700, 715, 1211, 1341
MspR9I CCNGG 2 cut(s) 701, 1212
MunI CAATTG 2 cut(s) 255, 1326
Mva1269I GAATGC 1 cut(s) 826
MvnI CGCG 3 cut(s) 225, 327, 795
MwoI GCNNNNNNNGC 3 cut(s) 277, 650, 1067
NciI CCSGG 2 cut(s) 701, 1212
NdeII GATC 6 cut(s) 184, 246, 331, 759, 812, 1157
NheI GCTAGC 1 cut(s) 745
NlaIII CATG 8 cut(s) 238, 418, 877, 1088, 1143, 1210, 1285, 1321
NlaIV GGNNCC 3 cut(s) 791, 841, 1339
NmuCI GTSAC 4 cut(s) 259, 733, 1214, 1357
NspI RCATGY 3 cut(s) 418, 877, 1285
PceI AGGCCT 1 cut(s) 707
PcsI WCGNNNNNNNCGW 1 cut(s) 331
PctI GAATGC 1 cut(s) 826
PdmI GAANNNNTTC 1 cut(s) 513
PfeI GAWTC 4 cut(s) 721, 964, 986, 1344
PfoI TCCNGGA 1 cut(s) 699
PkrI GCNGC 5 cut(s) 143, 1072, 1185, 1267, 1270
PleI GAGTC 1 cut(s) 1231
PpsI GAGTC 1 cut(s) 1231
Psp124BI GAGCTC 2 cut(s) 697, 1413
PspEI GGTNACC 1 cut(s) 1214
PspFI CCCAGC 1 cut(s) 290
PspN4I GGNNCC 3 cut(s) 791, 841, 1339
PspPI GGNCC 1 cut(s) 1338
PstNI CAGNNNCTG 1 cut(s) 1268
PsuI RGATCY 1 cut(s) 184
PvuII CAGCTG 1 cut(s) 1265
RsaI GTAC 3 cut(s) 324, 944, 1376
RsaNI GTAC 3 cut(s) 323, 943, 1375
RseI CAYNNNNRTG 1 cut(s) 1106
SacI GAGCTC 2 cut(s) 697, 1413
SacII CCGCGG 1 cut(s) 226
SaqAI TTAA 2 cut(s) 344, 458
SatI GCNGC 5 cut(s) 142, 1071, 1184, 1266, 1269
Sau3AI GATC 6 cut(s) 184, 246, 331, 759, 812, 1157
Sau96I GGNCC 1 cut(s) 1338
ScaI AGTACT 1 cut(s) 1376
SchI GAGTC 1 cut(s) 1232
ScrFI CCNGG 2 cut(s) 701, 1212
SduI GDGCHC 6 cut(s) 340, 355, 697, 1126, 1297, 1413
SfaNI GCATC 3 cut(s) 189, 267, 1296
SfcI CTRYAG 1 cut(s) 934
Sfr303I CCGCGG 1 cut(s) 226
SgrBI CCGCGG 1 cut(s) 226
SinI GGWCC 1 cut(s) 1338
SmiMI CAYNNNNRTG 1 cut(s) 1106
SmlI CTYRAG 1 cut(s) 1187
SmoI CTYRAG 1 cut(s) 1187
Sse9I AATT 8 cut(s) 255, 459, 543, 632, 774, 952, 1007, 1326
SseBI AGGCCT 1 cut(s) 707
SsiI CCGC 6 cut(s) 223, 225, 793, 948, 1249, 1355
SspI AATATT 1 cut(s) 995
SspMI CTAG 6 cut(s) 533, 746, 959, 1028, 1053, 1429
SstI GAGCTC 2 cut(s) 697, 1413
StuI AGGCCT 1 cut(s) 707
StyD4I CCNGG 2 cut(s) 699, 1210
StyI CCWWGG 1 cut(s) 784
TaaI ACNGT 8 cut(s) 39, 112, 232, 617, 754, 1092, 1220, 1303
TaiI ACGT 1 cut(s) 735
TaqI TCGA 4 cut(s) 16, 676, 691, 1380
TasI AATT 8 cut(s) 255, 459, 543, 632, 774, 952, 1007, 1326
TatI WGTACW 1 cut(s) 1374
TfiI GAWTC 4 cut(s) 721, 964, 986, 1344
Tru1I TTAA 2 cut(s) 344, 458
Tru9I TTAA 2 cut(s) 344, 458
TscAI CASTG 6 cut(s) 622, 759, 1048, 1095, 1308, 1411
TseFI GTSAC 4 cut(s) 259, 733, 1214, 1357
TseI GCWGC 5 cut(s) 141, 1070, 1183, 1265, 1268
Tsp45I GTSAC 4 cut(s) 259, 733, 1214, 1357
TspDTI ATGAA 5 cut(s) 115, 522, 544, 907, 1306
TspRI CASTG 6 cut(s) 622, 759, 1048, 1095, 1308, 1411
VneI GTGCAC 2 cut(s) 1122, 1293
VpaK11BI GGWCC 1 cut(s) 1338
XapI RAATTY 3 cut(s) 543, 632, 952
XceI RCATGY 3 cut(s) 418, 877, 1285
XcmI CCANNNNNNNNNTGG 1 cut(s) 440
XmnI GAANNNNTTC 1 cut(s) 513
XspI CTAG 6 cut(s) 533, 746, 959, 1028, 1053, 1429
ZrmI AGTACT 1 cut(s) 1376
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.