pycom11g26160

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
OG0015386
Physical Location & Seq
Reverse (-)
28803796 .. 28805049
1254 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 684 bp
ATGACATTTCAATTGTTCGTATTAAGGATCAAAACGTTACAAAGTTTACCGCCACCAACCGTTTTCTCTCCAGACAAAATCCAACAGAAACAGAGGAAGAAAATAACCCAAACCAGACTCCCCCAATCTAAAAGCATGAAATCTGTGTGTCCAGCTCGACCAATCACATCCGTTCCAAAATTTCCTCCACCCTCTTCCACGAATATCTCCGCTCTAGTCAATGTCGCTACGCCTGCGCTGAATTTCCGGTTTTCACCGCACCCGATTCGCCGTCGGAATGATCTCCGGAAGTCGCAAACTGCTGCAAGATCTCAGTTTTCCTCGAACCCACAGAGCAATGAGCAAGAAGAAGACGACCCAGATGCCCAAGTTCAAGACCTTGTGGTCCCACAACATTGGTTGACCCCCTCAAAGGCCCTGGAGGAATCAGAGTGGCTGAGGGCTACTTTGCACAAGTGGTTGGACGATGAGTACTGCCCGGAACCCACCAATGCCGAAATCAGCAAGGTTGCTGCTCAGTCCTACTACGATTCTTTACTCGGAAAACAGACGGATTTGGGTGAGATTCTGTTGAAGATGGCCAGAGAATTGGAATCCATTTCCTACCAGGAAAGCTTTCACGGCGCGTTCTCGTCAGCCAACGCGGCCGTGAATTTGATTTCCCAACGGATAGAGCAGGCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

228

Amino Acids

25.63

Weight (kDa)

8.85

Isoelectric Point (pI)

75.64

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015386)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G03150
fragaria_vesca FvH4_2g24710
malus_domestica MD00G1056400.v1.1
prunus_persica Prupe.8G252200_v2.0.a1
pyrus_communis pycom03g21930 pycom11g26160
rosa_chinensis RchiOBHm_Chr6g0292541
rosa_laevigata RLG00000012011
rosa_multiflora Rmu_ssc0000060.1_g000002
rosa_roxburghii Rroxscaffold_7G00174950
rosa_rugosa Rorug06G0227800
rosa_samantha Rh6AG340900 Rh6BG348300 Rh6CG355200 Rh6DG341000
rosa_wichuraiana Rw6G029700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 383
AccBSI CCGCTC 1 cut(s) 212
AccII CGCG 2 cut(s) 626, 644
AccIII TCCGGA 1 cut(s) 285
AciI CCGC 4 cut(s) 50, 210, 257, 644
AclI AACGTT 1 cut(s) 35
AclWI GGATC 1 cut(s) 35
AcoI YGGCCR 2 cut(s) 579, 645
AcsI RAATTY 3 cut(s) 179, 241, 652
AfaI GTAC 1 cut(s) 473
AfiI CCNNNNNNNGG 1 cut(s) 412
AgsI TTSAA 3 cut(s) 11, 374, 574
AjnI CCWGG 2 cut(s) 417, 606
AluBI AGCT 2 cut(s) 155, 615
AluI AGCT 2 cut(s) 155, 615
AlwI GGATC 1 cut(s) 35
Aor13HI TCCGGA 1 cut(s) 285
AoxI GGCC 4 cut(s) 414, 579, 645, 678
ApeKI GCWGC 2 cut(s) 302, 512
ApoI RAATTY 3 cut(s) 179, 241, 652
Asp700I GAANNNNTTC 1 cut(s) 615
AspLEI GCGC 2 cut(s) 238, 626
AspS9I GGNCC 2 cut(s) 385, 415
AsuC2I CCSGG 1 cut(s) 479
AsuHPI GGTGA 2 cut(s) 246, 572
AvaII GGWCC 1 cut(s) 385
BalI TGGCCA 1 cut(s) 581
BbsI GAAGAC 1 cut(s) 357
BbvCI CCTCAGC 1 cut(s) 437
BbvI GCAGC 2 cut(s) 289, 499
BccI CCATC 1 cut(s) 571
BceAI ACGGC 3 cut(s) 255, 632, 637
BcgI CGANNNNNNTGC 4 cut(s) 248, 282, 344, 378
BciT130I CCWGG 2 cut(s) 419, 608
BcnI CCSGG 1 cut(s) 479
BfaI CTAG 1 cut(s) 215
BglI GCCNNNNNGGC 1 cut(s) 644
BglII AGATCT 1 cut(s) 308
BisI GCNGC 3 cut(s) 303, 513, 645
BlsI GCNGC 3 cut(s) 304, 514, 646
BmcAI AGTACT 1 cut(s) 473
Bme1390I CCNGG 3 cut(s) 419, 479, 608
Bme18I GGWCC 1 cut(s) 385
BmgT120I GGNCC 2 cut(s) 385, 415
BmiI GGNNCC 2 cut(s) 387, 483
BmrFI CCNGG 3 cut(s) 419, 479, 608
BmsI GCATC 1 cut(s) 352
BpiI GAAGAC 1 cut(s) 357
BpmI CTGGAG 2 cut(s) 54, 440
Bpu10I CCTNAGC 1 cut(s) 437
BpuMI CCSGG 1 cut(s) 479
BsaJI CCNNGG 1 cut(s) 417
BsaWI WCCGGW 2 cut(s) 246, 285
Bsc4I CCNNNNNNNGG 1 cut(s) 412
Bse3DI GCAATG 1 cut(s) 343
BseAI TCCGGA 1 cut(s) 285
BseBI CCWGG 2 cut(s) 419, 608
BseDI CCNNGG 1 cut(s) 417
BseGI GGATG 1 cut(s) 167
BseLI CCNNNNNNNGG 1 cut(s) 412
BseMI GCAATG 1 cut(s) 343
BseMII CTCAG 3 cut(s) 326, 428, 530
BseX3I CGGCCG 1 cut(s) 645
BseXI GCAGC 2 cut(s) 289, 499
Bsh1236I CGCG 2 cut(s) 626, 644
Bsh1285I CGRYCG 1 cut(s) 648
BshFI GGCC 4 cut(s) 416, 581, 647, 680
BsiEI CGRYCG 1 cut(s) 648
BsiSI CCGG 3 cut(s) 247, 286, 479
BslFI GGGAC 1 cut(s) 371
BslI CCNNNNNNNGG 1 cut(s) 412
BsmFI GGGAC 1 cut(s) 371
BsnI GGCC 4 cut(s) 416, 581, 647, 680
Bsp13I TCCGGA 1 cut(s) 285
Bsp143I GATC 3 cut(s) 27, 280, 308
BspACI CCGC 4 cut(s) 50, 210, 257, 644
BspANI GGCC 4 cut(s) 416, 581, 647, 680
BspCNI CTCAG 3 cut(s) 325, 429, 529
BspEI TCCGGA 1 cut(s) 285
BspFNI CGCG 2 cut(s) 626, 644
BspLI GGNNCC 2 cut(s) 387, 483
BspPI GGATC 1 cut(s) 35
BsrBI CCGCTC 1 cut(s) 212
BsrDI GCAATG 1 cut(s) 343
BssECI CCNNGG 1 cut(s) 417
BssMI GATC 3 cut(s) 27, 280, 308
Bst2UI CCWGG 2 cut(s) 419, 608
Bst4CI ACNGT 1 cut(s) 61
Bst6I CTCTTC 1 cut(s) 199
BstC8I GCNNGC 2 cut(s) 234, 678
BstDEI CTNAG 3 cut(s) 312, 437, 516
BstF5I GGATG 1 cut(s) 167
BstFNI CGCG 2 cut(s) 626, 644
BstHHI GCGC 2 cut(s) 238, 626
BstKTI GATC 3 cut(s) 30, 283, 311
BstMBI GATC 3 cut(s) 27, 280, 308
BstMCI CGRYCG 1 cut(s) 648
BstMWI GCNNNNNNNGC 3 cut(s) 233, 621, 644
BstNI CCWGG 2 cut(s) 419, 608
BstSCI CCNGG 3 cut(s) 417, 477, 606
BstUI CGCG 2 cut(s) 626, 644
BstV1I GCAGC 2 cut(s) 289, 499
BstV2I GAAGAC 1 cut(s) 357
BstX2I RGATCY 1 cut(s) 308
BstXI CCANNNNNNTGG 2 cut(s) 396, 589
BstYI RGATCY 1 cut(s) 308
BstZI CGGCCG 1 cut(s) 645
BsuRI GGCC 4 cut(s) 416, 581, 647, 680
BtsCI GGATG 1 cut(s) 167
Cac8I GCNNGC 2 cut(s) 234, 678
CfoI GCGC 2 cut(s) 238, 626
Cfr13I GGNCC 2 cut(s) 385, 415
Csp6I GTAC 1 cut(s) 472
CviAII CATG 1 cut(s) 136
CviJI RGCY 9 cut(s) 155, 416, 436, 443, 581, 615, 638, 647, 680
CviKI_1 RGCY 9 cut(s) 155, 416, 436, 443, 581, 615, 638, 647, 680
CviQI GTAC 1 cut(s) 472
DdeI CTNAG 3 cut(s) 312, 437, 516
DpnI GATC 3 cut(s) 29, 282, 310
DpnII GATC 3 cut(s) 27, 280, 308
DrdI GACNNNNNNGTC 1 cut(s) 383
DseDI GACNNNNNNGTC 1 cut(s) 383
EaeI YGGCCR 2 cut(s) 579, 645
EagI CGGCCG 1 cut(s) 645
Eam1104I CTCTTC 1 cut(s) 199
EarI CTCTTC 1 cut(s) 199
EclXI CGGCCG 1 cut(s) 645
Eco147I AGGCCT 1 cut(s) 680
Eco47I GGWCC 1 cut(s) 385
Eco52I CGGCCG 1 cut(s) 645
EcoO109I RGGNCCY 1 cut(s) 415
EcoRII CCWGG 2 cut(s) 417, 606
FaeI CATG 1 cut(s) 139
FaiI YATR 1 cut(s) 137
FaqI GGGAC 1 cut(s) 371
FatI CATG 1 cut(s) 135
Fnu4HI GCNGC 3 cut(s) 303, 513, 645
FokI GGATG 1 cut(s) 154
Fsp4HI GCNGC 3 cut(s) 303, 513, 645
FspBI CTAG 1 cut(s) 215
GlaI GCGC 2 cut(s) 237, 625
GluI GCNGC 3 cut(s) 303, 513, 645
GsuI CTGGAG 2 cut(s) 54, 440
HaeIII GGCC 4 cut(s) 416, 581, 647, 680
HapII CCGG 3 cut(s) 247, 286, 479
HhaI GCGC 2 cut(s) 238, 626
Hin1II CATG 1 cut(s) 139
Hin6I GCGC 2 cut(s) 236, 624
HinP1I GCGC 2 cut(s) 236, 624
HincII GTYRAC 1 cut(s) 402
HindII GTYRAC 1 cut(s) 402
HindIII AAGCTT 1 cut(s) 613
HinfI GANTC 6 cut(s) 117, 265, 425, 530, 565, 593
HpaII CCGG 3 cut(s) 247, 286, 479
HphI GGTGA 2 cut(s) 246, 572
Hpy166II GTNNAC 2 cut(s) 47, 402
Hpy188I TCNGA 3 cut(s) 276, 430, 542
Hpy188III TCNNGA 3 cut(s) 71, 286, 374
Hpy8I GTNNAC 2 cut(s) 47, 402
Hpy99I CGWCG 1 cut(s) 276
HpyCH4III ACNGT 1 cut(s) 61
HpyCH4IV ACGT 1 cut(s) 35
HpyCH4V TGCA 2 cut(s) 305, 451
HpyF10VI GCNNNNNNNGC 3 cut(s) 233, 621, 644
HpyF3I CTNAG 3 cut(s) 312, 437, 516
HpySE526I ACGT 1 cut(s) 35
Hsp92II CATG 1 cut(s) 139
HspAI GCGC 2 cut(s) 236, 624
Kpn2I TCCGGA 1 cut(s) 285
Kzo9I GATC 3 cut(s) 27, 280, 308
Lsp1109I GCAGC 2 cut(s) 289, 499
LweI GCATC 1 cut(s) 352
MaeI CTAG 1 cut(s) 215
MaeII ACGT 1 cut(s) 35
MaeIII GTNAC 1 cut(s) 36
MalI GATC 3 cut(s) 29, 282, 310
MbiI CCGCTC 1 cut(s) 212
MboI GATC 3 cut(s) 27, 280, 308
MboII GAAGA 5 cut(s) 109, 186, 359, 362, 586
MfeI CAATTG 1 cut(s) 11
MflI RGATCY 1 cut(s) 308
MlsI TGGCCA 1 cut(s) 581
MluCI AATT 5 cut(s) 11, 179, 241, 587, 652
MluNI TGGCCA 1 cut(s) 581
MlyI GAGTC 1 cut(s) 111
MmeI TCCRAC 3 cut(s) 106, 254, 441
MnlI CCTC 7 cut(s) 87, 195, 202, 331, 415, 418, 432
Mox20I TGGCCA 1 cut(s) 581
MroI TCCGGA 1 cut(s) 285
MroXI GAANNNNTTC 1 cut(s) 615
MscI TGGCCA 1 cut(s) 581
MseI TTAA 1 cut(s) 23
Msp20I TGGCCA 1 cut(s) 581
MspI CCGG 3 cut(s) 247, 286, 479
MspR9I CCNGG 3 cut(s) 419, 479, 608
MunI CAATTG 1 cut(s) 11
MvaI CCWGG 2 cut(s) 419, 608
MvnI CGCG 2 cut(s) 626, 644
MwoI GCNNNNNNNGC 3 cut(s) 233, 621, 644
NciI CCSGG 1 cut(s) 479
NdeII GATC 3 cut(s) 27, 280, 308
NlaIII CATG 1 cut(s) 139
NlaIV GGNNCC 2 cut(s) 387, 483
PceI AGGCCT 1 cut(s) 680
PdmI GAANNNNTTC 1 cut(s) 615
PfeI GAWTC 5 cut(s) 265, 425, 530, 565, 593
PkrI GCNGC 3 cut(s) 304, 514, 646
PleI GAGTC 1 cut(s) 111
PpsI GAGTC 1 cut(s) 111
Psp1406I AACGTT 1 cut(s) 35
Psp6I CCWGG 2 cut(s) 417, 606
PspGI CCWGG 2 cut(s) 417, 606
PspN4I GGNNCC 2 cut(s) 387, 483
PspPI GGNCC 2 cut(s) 385, 415
PsuI RGATCY 1 cut(s) 308
RsaI GTAC 1 cut(s) 473
RsaNI GTAC 1 cut(s) 472
SaqAI TTAA 1 cut(s) 23
SatI GCNGC 3 cut(s) 303, 513, 645
Sau3AI GATC 3 cut(s) 27, 280, 308
Sau96I GGNCC 2 cut(s) 385, 415
ScaI AGTACT 1 cut(s) 473
SchI GAGTC 1 cut(s) 111
ScrFI CCNGG 3 cut(s) 419, 479, 608
SetI ASST 5 cut(s) 38, 157, 381, 510, 617
SfaNI GCATC 1 cut(s) 352
SinI GGWCC 1 cut(s) 385
Sse9I AATT 5 cut(s) 11, 179, 241, 587, 652
SseBI AGGCCT 1 cut(s) 680
SsiI CCGC 4 cut(s) 50, 210, 257, 644
SspMI CTAG 1 cut(s) 215
StuI AGGCCT 1 cut(s) 680
StyD4I CCNGG 3 cut(s) 417, 477, 606
TaaI ACNGT 1 cut(s) 61
TaiI ACGT 1 cut(s) 38
TaqI TCGA 2 cut(s) 157, 323
TasI AATT 5 cut(s) 11, 179, 241, 587, 652
TatI WGTACW 1 cut(s) 471
TauI GCSGC 1 cut(s) 647
TfiI GAWTC 5 cut(s) 265, 425, 530, 565, 593
Tru1I TTAA 1 cut(s) 23
Tru9I TTAA 1 cut(s) 23
TseI GCWGC 2 cut(s) 302, 512
TspDTI ATGAA 1 cut(s) 152
TspGWI ACGGA 3 cut(s) 160, 566, 682
VpaK11BI GGWCC 1 cut(s) 385
XapI RAATTY 3 cut(s) 179, 241, 652
XmnI GAANNNNTTC 1 cut(s) 615
XspI CTAG 1 cut(s) 215
ZrmI AGTACT 1 cut(s) 473
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.