pycom11g26530

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
OG0015846
Physical Location & Seq
Reverse (-)
29076987 .. 29078405
1419 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1419 bp
ATGACGACGAGACCGCCACCGCAGCTCAGCCCCACAACAACCCGACTCCTCTCTCTCCTAACCAACTGCTCCTCCGCTTCTCACATCCCGCAAATCCAAACCCAACTCATCCTCCTCAACCGCCACTCGGACACCGCCGTCGCTTCCCGCTTCATCGCCGCCTGCCAATCCCTCCGCCGCCTGGATATAGCCCACCGCCACTTCCTAACGCAAATCCCCAAACCCCATGTTTTCATCTGCAACTCTCTCATCAGAGCCTTCTCTCACACCCACACCCCTCAAGTCCCTTTCTCTATCTACACCCACATGCACAAAAGCTCCATTCTTCCCAACAACTTCACCTTCCCTTTCCTACTGAAGTCGATCGCCGATTCCCGGGACTTCATAAATGGGCAATGCCTGCATACCCATGTCGTGAAATTGGGTCATCTCTATGATATTTATGTGCAGAACTCGTTGTTGAATCTGTATGCGTCGTCCTCCGGCCGAATGGAGTTATGTCGAAAGGTGTTTGATGAAATGCCTCAAAGAGACGTTGTGTCATGGACGGTTTTAATTATGGGGTACCGGAATGCCGGGAATTATGATGATGCTTTGATTGCTTTTGAACAGATGCAGTTTGCTGGTGTGGTGCCAAACCATGTGACAATGGTGAATGCTTTGGCGGCGTGTGCGAATTTTGGGGCCCTTGAGATGGGGGTTTGGATACATGACTTTATAAGGGGGAGTGGATGGGAATTGGATGTGATCTTGGGAACTTCTTTGATTGACATGTATGGAAAATGTGGTAGGATCGAAGAGGGATTGGCGGTTTTCAATAGCATGAAAGAGAAGAACACATTTACTTGGAATGCTCTTATTAAAGGGCTAGCTGTTGCTAAATATGGTAAGGAGACAGTTGAGTGGTTTGAGAGGATGGAACAAGAAGGGATCAGAATAGACGAAGTCACTTTGGTTTCGGTTTTAAGTGCTTGCAGTCACTCGGGGTTGGTTGATATGGGCAGGCAGATTTTTCGTTCCTTGAGTGATGGAAAATATGGATTTTTGCCCGGGGTCAAACACTATGCTTGTATGATTGACCTCTTAGCACGTTCGGGATGTCTCGAAGATGCTTTGAAATGCTTGAGAGAAATGCCTTTTGAGCCTACTATAACTATTTGGGGGTCGTTGTTGGGCGGTGCTAAAACTCATGGGAATTTGGAATTGAGCGAGTTTGCAGCTTGGAAGCTTGTTGAACTGGATCCAGGGAATAGTGGTTACTATGTTTTGCTGTCTAATTTTTATGCAGAGATGGGAAGATGGGATGATGTTGAGAAAGTGAGGGGGATGATGAAACAGAGAGATCTTAAGAAAGACCTGGGTTGTAGTTCCGTGGAATTCGAGCCCCCGGACCAAGTTAATCAACTATTAGCACGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00460 ko00630 ko00910 ko01200 map00460 map00630 map00910 map01200
Pfam Domains
Protein Families
PPR PPR_2 PPR_3

Protein Analysis

473

Amino Acids

53.06

Weight (kDa)

6.78

Isoelectric Point (pI)

38.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 177 - 225 3.7e-08 PPR repeat family
PPR PF01535 253 - 279 1e-05 PPR repeat
PPR_2 PF13041 278 - 326 4.7e-08 PPR repeat family
E_motif PF20431 397 - 459 5.3e-22 E motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015846)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G43790
fragaria_vesca FvH4_2g25230
malus_domestica MD03G1282600.v1.1 MD11G1303700.v1.1
prunus_persica Prupe.8G257000_v2.0.a1
pyrus_communis pycom11g26530
rosa_chinensis RchiOBHm_Chr6g0293351
rosa_laevigata RLG00000011953
rosa_multiflora Rmu_sc0006269.1_g000030
rosa_roxburghii Rroxscaffold_7G00174230
rosa_rugosa Rorug06G0234800
rosa_samantha Rh6AG347700 Rh6BG355300 Rh6DG348500
rosa_wichuraiana Rw6G030250

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 719
AasI GACNNNNNNGTC 1 cut(s) 137
Acc65I GGTACC 1 cut(s) 564
AccB1I GGYRCC 2 cut(s) 564, 631
AclWI GGATC 4 cut(s) 800, 938, 1235, 1248
AcoI YGGCCR 1 cut(s) 484
AcsI RAATTY 3 cut(s) 676, 1195, 1376
AcuI CTGAAG 1 cut(s) 377
AfaI GTAC 1 cut(s) 566
AfiI CCNNNNNNNGG 4 cut(s) 127, 181, 375, 694
AflII CTTAAG 1 cut(s) 1346
AflIII ACRYGT 1 cut(s) 771
AgsI TTSAA 5 cut(s) 463, 608, 817, 1117, 1235
AhdI GACNNNNNGTC 1 cut(s) 538
AjnI CCWGG 3 cut(s) 180, 1243, 1356
AluBI AGCT 5 cut(s) 25, 318, 872, 1220, 1228
AluI AGCT 5 cut(s) 25, 318, 872, 1220, 1228
Alw26I GTCTC 4 cut(s) 4, 525, 887, 1106
AlwI GGATC 4 cut(s) 800, 938, 1235, 1248
Ama87I CYCGRG 3 cut(s) 375, 982, 1049
AoxI GGCC 2 cut(s) 484, 684
ApaI GGGCCC 1 cut(s) 688
ApeKI GCWGC 2 cut(s) 22, 1217
ApoI RAATTY 3 cut(s) 676, 1195, 1376
Asp718I GGTACC 1 cut(s) 564
AspS9I GGNCC 3 cut(s) 684, 685, 1390
AsuC2I CCSGG 6 cut(s) 376, 377, 577, 1050, 1051, 1388
AsuHPI GGTGA 2 cut(s) 331, 664
AsuNHI GCTAGC 1 cut(s) 868
AvaI CYCGRG 3 cut(s) 375, 982, 1049
AvaII GGWCC 1 cut(s) 1390
BaeGI GKGCMC 1 cut(s) 688
BamHI GGATCC 1 cut(s) 1240
BanI GGYRCC 2 cut(s) 564, 631
BanII GRGCYC 2 cut(s) 688, 1386
BbvI GCAGC 2 cut(s) 34, 1229
BccI CCATC 6 cut(s) 688, 726, 910, 1022, 1285, 1293
BceAI ACGGC 1 cut(s) 122
BcgI CGANNNNNNTGC 2 cut(s) 995, 1029
BciT130I CCWGG 3 cut(s) 182, 1245, 1358
BciVI GTATCC 1 cut(s) 699
BcnI CCSGG 6 cut(s) 376, 377, 577, 1050, 1051, 1388
BcoDI GTCTC 4 cut(s) 4, 525, 887, 1106
BfaI CTAG 1 cut(s) 869
BfrI CTTAAG 1 cut(s) 1346
BfuI GTATCC 1 cut(s) 699
BglII AGATCT 1 cut(s) 1342
BisI GCNGC 5 cut(s) 23, 159, 178, 666, 1218
BlpI GCTNAGC 1 cut(s) 26
BlsI GCNGC 5 cut(s) 24, 160, 179, 667, 1219
Bme1390I CCNGG 9 cut(s) 182, 376, 377, 577, 1050, 1051, 1245, 1358, 1388
Bme18I GGWCC 1 cut(s) 1390
BmeRI GACNNNNNGTC 1 cut(s) 538
BmeT110I CYCGRG 3 cut(s) 375, 982, 1049
BmgT120I GGNCC 3 cut(s) 684, 685, 1390
BmiI GGNNCC 5 cut(s) 566, 633, 685, 686, 1242
BmrFI CCNGG 9 cut(s) 182, 376, 377, 577, 1050, 1051, 1245, 1358, 1388
BmsI GCATC 3 cut(s) 580, 603, 1099
BmtI GCTAGC 1 cut(s) 872
Bpu1102I GCTNAGC 1 cut(s) 26
BpuEI CTTGAG 4 cut(s) 264, 710, 1042, 1144
BpuMI CCSGG 6 cut(s) 376, 377, 577, 1050, 1051, 1388
BsaI GGTCTC 1 cut(s) 4
BsaJI CCNNGG 7 cut(s) 375, 1049, 1050, 1244, 1357, 1371, 1386
BsaWI WCCGGW 1 cut(s) 567
BsaXI ACNNNNNCTCC 6 cut(s) 56, 86, 96, 126, 302, 332
Bsc4I CCNNNNNNNGG 4 cut(s) 127, 181, 375, 694
Bse1I ACTGG 1 cut(s) 1242
Bse3DI GCAATG 1 cut(s) 401
BseBI CCWGG 3 cut(s) 182, 1245, 1358
BseDI CCNNGG 7 cut(s) 375, 1049, 1050, 1244, 1357, 1371, 1386
BseGI GGATG 8 cut(s) 84, 108, 737, 748, 921, 1103, 1309, 1332
BseLI CCNNNNNNNGG 4 cut(s) 127, 181, 375, 694
BseMI GCAATG 1 cut(s) 401
BseMII CTCAG 1 cut(s) 40
BseNI ACTGG 1 cut(s) 1242
BseRI GAGGAG 3 cut(s) 38, 61, 104
BseSI GKGCMC 1 cut(s) 688
BseX3I CGGCCG 1 cut(s) 484
BseXI GCAGC 2 cut(s) 34, 1229
BsgI GTGCAG 1 cut(s) 467
Bsh1285I CGRYCG 2 cut(s) 366, 487
BshFI GGCC 2 cut(s) 486, 686
BshNI GGYRCC 2 cut(s) 564, 631
BsiEI CGRYCG 2 cut(s) 366, 487
BsiHKCI CYCGRG 3 cut(s) 375, 982, 1049
BsiSI CCGG 6 cut(s) 376, 483, 568, 576, 1050, 1388
BslFI GGGAC 2 cut(s) 269, 392
BslI CCNNNNNNNGG 4 cut(s) 127, 181, 375, 694
BsmAI GTCTC 4 cut(s) 4, 525, 887, 1106
BsmBI CGTCTC 1 cut(s) 525
BsmFI GGGAC 2 cut(s) 269, 392
BsmI GAATGC 3 cut(s) 577, 661, 856
BsnI GGCC 2 cut(s) 486, 686
Bso31I GGTCTC 1 cut(s) 4
BsoBI CYCGRG 3 cut(s) 375, 982, 1049
Bsp120I GGGCCC 1 cut(s) 684
Bsp1286I GDGCHC 2 cut(s) 688, 1386
Bsp143I GATC 6 cut(s) 363, 747, 792, 930, 1240, 1342
Bsp1720I GCTNAGC 1 cut(s) 26
BspANI GGCC 2 cut(s) 486, 686
BspCNI CTCAG 1 cut(s) 39
BspLI GGNNCC 5 cut(s) 566, 633, 685, 686, 1242
BspOI GCTAGC 1 cut(s) 872
BspPI GGATC 4 cut(s) 800, 938, 1235, 1248
BspT107I GGYRCC 2 cut(s) 564, 631
BspTI CTTAAG 1 cut(s) 1346
BspTNI GGTCTC 1 cut(s) 4
BsrDI GCAATG 1 cut(s) 401
BsrI ACTGG 1 cut(s) 1242
BssECI CCNNGG 7 cut(s) 375, 1049, 1050, 1244, 1357, 1371, 1386
BssMI GATC 6 cut(s) 363, 747, 792, 930, 1240, 1342
Bst2UI CCWGG 3 cut(s) 182, 1245, 1358
Bst4CI ACNGT 2 cut(s) 550, 898
Bst6I CTCTTC 1 cut(s) 792
BstAFI CTTAAG 1 cut(s) 1346
BstAPI GCANNNNNTGC 1 cut(s) 400
BstC8I GCNNGC 5 cut(s) 163, 401, 870, 973, 1004
BstDEI CTNAG 2 cut(s) 26, 1084
BstDSI CCRYGG 1 cut(s) 1371
BstF5I GGATG 8 cut(s) 84, 108, 737, 748, 921, 1103, 1309, 1332
BstKTI GATC 6 cut(s) 366, 750, 795, 933, 1243, 1345
BstMAI GTCTC 4 cut(s) 4, 525, 887, 1106
BstMBI GATC 6 cut(s) 363, 747, 792, 930, 1240, 1342
BstMCI CGRYCG 2 cut(s) 366, 487
BstMWI GCNNNNNNNGC 6 cut(s) 22, 400, 599, 665, 671, 1141
BstNI CCWGG 3 cut(s) 182, 1245, 1358
BstNSI RCATGY 2 cut(s) 310, 775
BstSCI CCNGG 9 cut(s) 180, 374, 375, 575, 1048, 1049, 1243, 1356, 1386
BstSLI GKGCMC 1 cut(s) 688
BstV1I GCAGC 2 cut(s) 34, 1229
BstX2I RGATCY 2 cut(s) 1240, 1342
BstYI RGATCY 2 cut(s) 1240, 1342
BstZI CGGCCG 1 cut(s) 484
BsuI GTATCC 1 cut(s) 699
BsuRI GGCC 2 cut(s) 486, 686
BtgI CCRYGG 1 cut(s) 1371
BtgZI GCGATG 1 cut(s) 139
BtsCI GGATG 8 cut(s) 84, 108, 737, 748, 921, 1103, 1309, 1332
Cac8I GCNNGC 5 cut(s) 163, 401, 870, 973, 1004
Cfr13I GGNCC 3 cut(s) 684, 685, 1390
Cfr9I CCCGGG 2 cut(s) 375, 1049
CseI GACGC 1 cut(s) 462
Csp6I GTAC 1 cut(s) 565
CviAII CATG 9 cut(s) 227, 307, 410, 543, 641, 710, 772, 823, 1190
CviQI GTAC 1 cut(s) 565
DdeI CTNAG 2 cut(s) 26, 1084
DpnI GATC 6 cut(s) 365, 749, 794, 932, 1242, 1344
DpnII GATC 6 cut(s) 363, 747, 792, 930, 1240, 1342
DrdI GACNNNNNNGTC 1 cut(s) 137
DriI GACNNNNNGTC 1 cut(s) 538
DseDI GACNNNNNNGTC 1 cut(s) 137
EaeI YGGCCR 1 cut(s) 484
EagI CGGCCG 1 cut(s) 484
Eam1104I CTCTTC 1 cut(s) 792
Eam1105I GACNNNNNGTC 1 cut(s) 538
EarI CTCTTC 1 cut(s) 792
EciI GGCGGA 1 cut(s) 164
EclXI CGGCCG 1 cut(s) 484
Eco24I GRGCYC 2 cut(s) 688, 1386
Eco31I GGTCTC 1 cut(s) 4
Eco47I GGWCC 1 cut(s) 1390
Eco52I CGGCCG 1 cut(s) 484
Eco57I CTGAAG 1 cut(s) 377
Eco88I CYCGRG 3 cut(s) 375, 982, 1049
EcoO109I RGGNCCY 2 cut(s) 684, 685
EcoRI GAATTC 1 cut(s) 1376
EcoRII CCWGG 3 cut(s) 180, 1243, 1356
EcoT38I GRGCYC 2 cut(s) 688, 1386
Esp3I CGTCTC 1 cut(s) 525
FaeI CATG 9 cut(s) 230, 310, 413, 546, 644, 713, 775, 826, 1193
FaqI GGGAC 2 cut(s) 269, 392
FatI CATG 9 cut(s) 226, 306, 409, 542, 640, 709, 771, 822, 1189
FauI CCCGC 2 cut(s) 96, 155
Fnu4HI GCNGC 5 cut(s) 23, 159, 178, 666, 1218
FokI GGATG 8 cut(s) 71, 95, 744, 755, 928, 1110, 1316, 1339
FriOI GRGCYC 2 cut(s) 688, 1386
Fsp4HI GCNGC 5 cut(s) 23, 159, 178, 666, 1218
FspBI CTAG 1 cut(s) 869
GluI GCNGC 5 cut(s) 23, 159, 178, 666, 1218
HaeIII GGCC 2 cut(s) 486, 686
HapII CCGG 6 cut(s) 376, 483, 568, 576, 1050, 1388
HgaI GACGC 1 cut(s) 462
Hin1II CATG 9 cut(s) 230, 310, 413, 546, 644, 713, 775, 826, 1193
HindIII AAGCTT 1 cut(s) 1226
HinfI GANTC 3 cut(s) 45, 371, 463
HpaII CCGG 6 cut(s) 376, 483, 568, 576, 1050, 1388
HphI GGTGA 2 cut(s) 331, 664
Hpy188I TCNGA 3 cut(s) 130, 254, 935
Hpy188III TCNNGA 3 cut(s) 415, 1095, 1103
Hpy99I CGWCG 3 cut(s) 10, 143, 478
HpyAV CCTTC 3 cut(s) 268, 352, 920
HpyCH4III ACNGT 2 cut(s) 550, 898
HpyCH4IV ACGT 2 cut(s) 534, 1090
HpyCH4V TGCA 8 cut(s) 240, 310, 403, 448, 616, 975, 1217, 1286
HpyF10VI GCNNNNNNNGC 6 cut(s) 22, 400, 599, 665, 671, 1141
HpyF3I CTNAG 2 cut(s) 26, 1084
HpySE526I ACGT 2 cut(s) 534, 1090
Hsp92II CATG 9 cut(s) 230, 310, 413, 546, 644, 713, 775, 826, 1193
KpnI GGTACC 1 cut(s) 568
Kzo9I GATC 6 cut(s) 363, 747, 792, 930, 1240, 1342
LmnI GCTCC 2 cut(s) 74, 323
Lsp1109I GCAGC 2 cut(s) 34, 1229
LweI GCATC 3 cut(s) 580, 603, 1099
MaeI CTAG 1 cut(s) 869
MaeII ACGT 2 cut(s) 534, 1090
MaeIII GTNAC 4 cut(s) 643, 946, 977, 1256
MalI GATC 6 cut(s) 365, 749, 794, 932, 1242, 1344
MboI GATC 6 cut(s) 363, 747, 792, 930, 1240, 1342
MboII GAAGA 5 cut(s) 317, 809, 844, 1118, 1308
MflI RGATCY 2 cut(s) 1240, 1342
MhlI GDGCHC 2 cut(s) 688, 1386
MluCI AATT 9 cut(s) 419, 555, 580, 676, 737, 1195, 1202, 1276, 1376
MlyI GAGTC 1 cut(s) 39
MseI TTAA 5 cut(s) 554, 861, 965, 1347, 1398
MslI CAYNNNNRTG 3 cut(s) 305, 408, 432
MspCI CTTAAG 1 cut(s) 1346
MspI CCGG 6 cut(s) 376, 483, 568, 576, 1050, 1388
MspR9I CCNGG 9 cut(s) 182, 376, 377, 577, 1050, 1051, 1245, 1358, 1388
Mva1269I GAATGC 3 cut(s) 577, 661, 856
MvaI CCWGG 3 cut(s) 182, 1245, 1358
MwoI GCNNNNNNNGC 6 cut(s) 22, 400, 599, 665, 671, 1141
NciI CCSGG 6 cut(s) 376, 377, 577, 1050, 1051, 1388
NdeII GATC 6 cut(s) 363, 747, 792, 930, 1240, 1342
NheI GCTAGC 1 cut(s) 868
NlaIII CATG 9 cut(s) 230, 310, 413, 546, 644, 713, 775, 826, 1193
NlaIV GGNNCC 5 cut(s) 566, 633, 685, 686, 1242
NmuCI GTSAC 3 cut(s) 643, 946, 977
NspI RCATGY 2 cut(s) 310, 775
PciI ACATGT 1 cut(s) 771
PctI GAATGC 3 cut(s) 577, 661, 856
PfeI GAWTC 2 cut(s) 371, 463
PflFI GACNNNGTC 1 cut(s) 944
PkrI GCNGC 5 cut(s) 24, 160, 179, 667, 1219
Ple19I CGATCG 1 cut(s) 366
PleI GAGTC 1 cut(s) 39
PpsI GAGTC 1 cut(s) 39
PscI ACATGT 1 cut(s) 771
PsiI TTATAA 1 cut(s) 719
Psp6I CCWGG 3 cut(s) 180, 1243, 1356
PspGI CCWGG 3 cut(s) 180, 1243, 1356
PspN4I GGNNCC 5 cut(s) 566, 633, 685, 686, 1242
PspOMI GGGCCC 1 cut(s) 684
PspPI GGNCC 3 cut(s) 684, 685, 1390
PsuI RGATCY 2 cut(s) 1240, 1342
PsyI GACNNNGTC 1 cut(s) 944
PvuI CGATCG 1 cut(s) 366
RsaI GTAC 1 cut(s) 566
RsaNI GTAC 1 cut(s) 565
RseI CAYNNNNRTG 3 cut(s) 305, 408, 432
SaqAI TTAA 5 cut(s) 554, 861, 965, 1347, 1398
SatI GCNGC 5 cut(s) 23, 159, 178, 666, 1218
Sau3AI GATC 6 cut(s) 363, 747, 792, 930, 1240, 1342
Sau96I GGNCC 3 cut(s) 684, 685, 1390
SchI GAGTC 1 cut(s) 39
ScrFI CCNGG 9 cut(s) 182, 376, 377, 577, 1050, 1051, 1245, 1358, 1388
SduI GDGCHC 2 cut(s) 688, 1386
SfaNI GCATC 3 cut(s) 580, 603, 1099
SinI GGWCC 1 cut(s) 1390
SmaI CCCGGG 2 cut(s) 377, 1051
SmiMI CAYNNNNRTG 3 cut(s) 305, 408, 432
SmlI CTYRAG 5 cut(s) 279, 689, 1021, 1123, 1346
SmoI CTYRAG 5 cut(s) 279, 689, 1021, 1123, 1346
Sse9I AATT 9 cut(s) 419, 555, 580, 676, 737, 1195, 1202, 1276, 1376
SspMI CTAG 1 cut(s) 869
StyD4I CCNGG 9 cut(s) 180, 374, 375, 575, 1048, 1049, 1243, 1356, 1386
TaaI ACNGT 2 cut(s) 550, 898
TaiI ACGT 2 cut(s) 537, 1093
TaqI TCGA 5 cut(s) 362, 502, 795, 1104, 1380
TasI AATT 9 cut(s) 419, 555, 580, 676, 737, 1195, 1202, 1276, 1376
TauI GCSGC 3 cut(s) 161, 180, 668
TfiI GAWTC 2 cut(s) 371, 463
Tru1I TTAA 5 cut(s) 554, 861, 965, 1347, 1398
Tru9I TTAA 5 cut(s) 554, 861, 965, 1347, 1398
TseFI GTSAC 3 cut(s) 643, 946, 977
TseI GCWGC 2 cut(s) 22, 1217
Tsp45I GTSAC 3 cut(s) 643, 946, 977
TspDTI ATGAA 6 cut(s) 142, 223, 373, 531, 839, 1346
TspGWI ACGGA 1 cut(s) 1360
TspMI CCCGGG 2 cut(s) 375, 1049
Tth111I GACNNNGTC 1 cut(s) 944
Vha464I CTTAAG 1 cut(s) 1346
VpaK11BI GGWCC 1 cut(s) 1390
XapI RAATTY 3 cut(s) 676, 1195, 1376
XceI RCATGY 2 cut(s) 310, 775
XmaI CCCGGG 2 cut(s) 375, 1049
XspI CTAG 1 cut(s) 869
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.