Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

tig00012646

Orthogroup ID

OG0011161

Physical Location & Seq

Genomic Coordinates Forward (+)

149151 .. 151707

Gene Structure 2557 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 573 bp

ATGCCCATAGAACCAGCCCAACAAATCACAGTTAAATCCAGCTCGACCCCCAAGTCTAAACCCTCCTTTGTTTCTGATTCCAAAACAAGAGAGAAAAAGCAAGCGACAGAGACGGAGATGGCCGGAGAGGAAGAGACCAGCGAGTTCTACCTGAGGTACTACGTCGGCCACAAGGGCAAGTTCGGCCACGAGTTCCTGGAGTTTGAGTTTCGACCAGACGGCAAGCTCCGGTACGCCAACAATTCCAACTACAAGAACGACACCATCATTCGTAAGGAGGTCTACGTCACGCCCGCCGTCGTCAGGGAGTGCCGTCGTATCATCTCAGAGAGCGAGATCATGAAGGAAGATGATGTGAACTGGCCAGAACCTGATCGTGTTGGGCGGCAGGAGCTTGAAATTGTAATGGGGAATGAGCATATCTCCTTCACTACTTCAAAGATCGGATCACTTGTAGATGTCCAGAGTAGTAAGGATCCTGAAGGTCTTCGCATCTTTTATTATCTCGTTCAGGATCTGAAGTGCTTTGTGTTCTCTCTCATCTCGCTTCACTTCAAGATCAAGCCTATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0005737 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0006935 GO:0007275 GO:0008150 GO:0008152 GO:0008380 GO:0009507 GO:0009536 GO:0009605 GO:0009790 GO:0009791 GO:0009793 GO:0009856 GO:0009893 GO:0009987 GO:0010154 GO:0010183 GO:0010467 GO:0010468 GO:0010604 GO:0010628 GO:0016070 GO:0016604 GO:0016607 GO:0019222 GO:0022414 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032991 GO:0034641 GO:0035145 GO:0040011 GO:0042221 GO:0042330 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0044706 GO:0046483 GO:0048316 GO:0048518 GO:0048608 GO:0048731 GO:0048856 GO:0048868 GO:0050789 GO:0050896 GO:0050918 GO:0051704 GO:0060255 GO:0061458 GO:0065007 GO:0070013 GO:0071704 GO:0090304 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko03013 ko03015 ko03040 map03013 map03015 map03040

Pfam Domains

Protein Families

Mago_nashi

Protein Analysis

191

Amino Acids

22.03

Weight (kDa)

6.14

Isoelectric Point (pI)

51.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mago_nashi	PF02792	49 - 190	7e-79	Mago nashi protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011161)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G02140
fragaria_vesca	FvH4_7g10360 FvH4_7g10360
malus_domestica	MD00G1129300.v1.1 MD07G1109700.v1.1
prunus_persica	Prupe.2G133100_v2.0.a1
pyrus_communis	pycom07g09420 pycom07g09430 pycom12646g00070
rosa_chinensis	RchiOBHm_Chr1g0348061
rosa_laevigata	RLG00000028694
rosa_multiflora	Rmu_sc0000253.1_g000002
rosa_roxburghii	Rroxscaffold_4G00307280
rosa_rugosa	Rorug01G0191400 Rorug01G0191500
rosa_samantha	Rh1AG209600 Rh1BG175300 Rh1CG194000 Rh1DG204900
rosa_wichuraiana	Rw1G017480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	52
AccI	GTMKAC	1 cut(s)	282
AciI	CCGC	2 cut(s)	294, 385
AclWI	GGATC	4 cut(s)	454, 470, 483, 522
AcoI	YGGCCR	4 cut(s)	120, 166, 184, 362
AcuI	CTGAAG	2 cut(s)	501, 539
AfaI	GTAC	2 cut(s)	158, 233
AfiI	CCNNNNNNNGG	1 cut(s)	303
AgsI	TTSAA	3 cut(s)	398, 438, 556
AjnI	CCWGG	1 cut(s)	195
AluBI	AGCT	3 cut(s)	42, 226, 394
AluI	AGCT	3 cut(s)	42, 226, 394
Alw26I	GTCTC	2 cut(s)	104, 128
AlwI	GGATC	4 cut(s)	454, 470, 483, 522
AlwNI	CAGNNNCTG	2 cut(s)	371, 517
AoxI	GGCC	4 cut(s)	120, 166, 184, 362
Asp700I	GAANNNNTTC	1 cut(s)	486
AxyI	CCTNAGG	1 cut(s)	152
BalI	TGGCCA	1 cut(s)	364
BamHI	GGATCC	1 cut(s)	475
BauI	CACGAG	1 cut(s)	188
BbsI	GAAGAC	1 cut(s)	479
BccI	CCATC	2 cut(s)	112, 272
BceAI	ACGGC	3 cut(s)	235, 281, 297
BciT130I	CCWGG	1 cut(s)	197
BcoDI	GTCTC	2 cut(s)	104, 128
BglI	GCCNNNNNGGC	1 cut(s)	174
BisI	GCNGC	1 cut(s)	386
BlsI	GCNGC	1 cut(s)	387
Bme1390I	CCNGG	1 cut(s)	197
BmiI	GGNNCC	1 cut(s)	477
BmrFI	CCNGG	1 cut(s)	197
BmsI	GCATC	1 cut(s)	501
BpiI	GAAGAC	1 cut(s)	479
BplI	GAGNNNNNCTC	2 cut(s)	407, 439
BpmI	CTGGAG	1 cut(s)	218
BsaI	GGTCTC	1 cut(s)	128
BsaWI	WCCGGW	1 cut(s)	228
BsaXI	ACNNNNNCTCC	2 cut(s)	191, 221
Bsc4I	CCNNNNNNNGG	1 cut(s)	303
Bse1I	ACTGG	1 cut(s)	365
Bse21I	CCTNAGG	1 cut(s)	152
BseBI	CCWGG	1 cut(s)	197
BseLI	CCNNNNNNNGG	1 cut(s)	303
BseMII	CTCAG	2 cut(s)	143, 339
BseNI	ACTGG	1 cut(s)	365
BshFI	GGCC	4 cut(s)	122, 168, 186, 364
BsiSI	CCGG	2 cut(s)	123, 229
BslI	CCNNNNNNNGG	1 cut(s)	303
BsmAI	GTCTC	2 cut(s)	104, 128
BsmBI	CGTCTC	1 cut(s)	104
BsnI	GGCC	4 cut(s)	122, 168, 186, 364
Bso31I	GGTCTC	1 cut(s)	128
Bsp143I	GATC	7 cut(s)	336, 373, 441, 446, 475, 514, 558
BspACI	CCGC	2 cut(s)	294, 385
BspANI	GGCC	4 cut(s)	122, 168, 186, 364
BspCNI	CTCAG	2 cut(s)	144, 338
BspHI	TCATGA	1 cut(s)	339
BspLI	GGNNCC	1 cut(s)	477
BspPI	GGATC	4 cut(s)	454, 470, 483, 522
BspTNI	GGTCTC	1 cut(s)	128
BsrI	ACTGG	1 cut(s)	365
BssMI	GATC	7 cut(s)	336, 373, 441, 446, 475, 514, 558
BssSI	CACGAG	1 cut(s)	188
Bst2BI	CACGAG	1 cut(s)	188
Bst2UI	CCWGG	1 cut(s)	197
Bst4CI	ACNGT	1 cut(s)	31
Bst6I	CTCTTC	1 cut(s)	126
BstC8I	GCNNGC	3 cut(s)	102, 224, 294
BstDEI	CTNAG	2 cut(s)	152, 325
BstKTI	GATC	7 cut(s)	339, 376, 444, 449, 478, 517, 561
BstMAI	GTCTC	2 cut(s)	104, 128
BstMBI	GATC	7 cut(s)	336, 373, 441, 446, 475, 514, 558
BstMWI	GCNNNNNNNGC	3 cut(s)	174, 183, 391
BstNI	CCWGG	1 cut(s)	197
BstSCI	CCNGG	1 cut(s)	195
BstV2I	GAAGAC	1 cut(s)	479
BstX2I	RGATCY	2 cut(s)	475, 514
BstYI	RGATCY	2 cut(s)	475, 514
Bsu36I	CCTNAGG	1 cut(s)	152
BsuRI	GGCC	4 cut(s)	122, 168, 186, 364
Cac8I	GCNNGC	3 cut(s)	102, 224, 294
CaiI	CAGNNNCTG	2 cut(s)	371, 517
CciI	TCATGA	1 cut(s)	339
Csp6I	GTAC	2 cut(s)	157, 232
CviAII	CATG	1 cut(s)	340
CviJI	RGCY	9 cut(s)	17, 42, 122, 168, 186, 226, 364, 394, 565
CviKI_1	RGCY	9 cut(s)	17, 42, 122, 168, 186, 226, 364, 394, 565
CviQI	GTAC	2 cut(s)	157, 232
DdeI	CTNAG	2 cut(s)	152, 325
DpnI	GATC	7 cut(s)	338, 375, 443, 448, 477, 516, 560
DpnII	GATC	7 cut(s)	336, 373, 441, 446, 475, 514, 558
DrdI	GACNNNNNNGTC	1 cut(s)	52
DseDI	GACNNNNNNGTC	1 cut(s)	52
EaeI	YGGCCR	4 cut(s)	120, 166, 184, 362
Eam1104I	CTCTTC	1 cut(s)	126
EarI	CTCTTC	1 cut(s)	126
Eco31I	GGTCTC	1 cut(s)	128
Eco57I	CTGAAG	2 cut(s)	501, 539
Eco81I	CCTNAGG	1 cut(s)	152
EcoRII	CCWGG	1 cut(s)	195
Esp3I	CGTCTC	1 cut(s)	104
FaeI	CATG	1 cut(s)	343
FaiI	YATR	5 cut(s)	8, 341, 420, 569, 571
FatI	CATG	1 cut(s)	339
FauI	CCCGC	1 cut(s)	301
FblI	GTMKAC	1 cut(s)	282
Fnu4HI	GCNGC	1 cut(s)	386
Fsp4HI	GCNGC	1 cut(s)	386
GluI	GCNGC	1 cut(s)	386
GsuI	CTGGAG	1 cut(s)	218
HaeIII	GGCC	4 cut(s)	122, 168, 186, 364
HapII	CCGG	2 cut(s)	123, 229
Hin1II	CATG	1 cut(s)	343
HinfI	GANTC	1 cut(s)	77
HpaII	CCGG	2 cut(s)	123, 229
Hpy166II	GTNNAC	2 cut(s)	283, 358
Hpy188I	TCNGA	4 cut(s)	76, 328, 446, 519
Hpy188III	TCNNGA	5 cut(s)	340, 463, 479, 512, 556
Hpy8I	GTNNAC	2 cut(s)	283, 358
Hpy99I	CGWCG	3 cut(s)	167, 302, 318
HpyAV	CCTTC	3 cut(s)	337, 436, 476
HpyCH4III	ACNGT	1 cut(s)	31
HpyCH4IV	ACGT	2 cut(s)	162, 285
HpyF10VI	GCNNNNNNNGC	3 cut(s)	174, 183, 391
HpyF3I	CTNAG	2 cut(s)	152, 325
HpySE526I	ACGT	2 cut(s)	162, 285
Hsp92II	CATG	1 cut(s)	343
Kzo9I	GATC	7 cut(s)	336, 373, 441, 446, 475, 514, 558
LmnI	GCTCC	2 cut(s)	231, 391
LweI	GCATC	1 cut(s)	501
MaeII	ACGT	2 cut(s)	162, 285
MaeIII	GTNAC	1 cut(s)	286
MalI	GATC	7 cut(s)	338, 375, 443, 448, 477, 516, 560
MboI	GATC	7 cut(s)	336, 373, 441, 446, 475, 514, 558
MboII	GAAGA	3 cut(s)	143, 359, 479
MflI	RGATCY	2 cut(s)	475, 514
MlsI	TGGCCA	1 cut(s)	364
MluCI	AATT	2 cut(s)	241, 399
MluNI	TGGCCA	1 cut(s)	364
MmeI	TCCRAC	1 cut(s)	270
MnlI	CCTC	4 cut(s)	73, 121, 147, 271
Mox20I	TGGCCA	1 cut(s)	364
MroXI	GAANNNNTTC	1 cut(s)	486
MscI	TGGCCA	1 cut(s)	364
MseI	TTAA	1 cut(s)	33
Msp20I	TGGCCA	1 cut(s)	364
MspI	CCGG	2 cut(s)	123, 229
MspR9I	CCNGG	1 cut(s)	197
MvaI	CCWGG	1 cut(s)	197
MwoI	GCNNNNNNNGC	3 cut(s)	174, 183, 391
NdeII	GATC	7 cut(s)	336, 373, 441, 446, 475, 514, 558
NlaIII	CATG	1 cut(s)	343
NlaIV	GGNNCC	1 cut(s)	477
NmuCI	GTSAC	1 cut(s)	286
PagI	TCATGA	1 cut(s)	339
PdmI	GAANNNNTTC	1 cut(s)	486
PfeI	GAWTC	1 cut(s)	77
PfoI	TCCNGGA	1 cut(s)	195
PkrI	GCNGC	1 cut(s)	387
Psp6I	CCWGG	1 cut(s)	195
PspGI	CCWGG	1 cut(s)	195
PspN4I	GGNNCC	1 cut(s)	477
PstNI	CAGNNNCTG	2 cut(s)	371, 517
PsuI	RGATCY	2 cut(s)	475, 514
RsaI	GTAC	2 cut(s)	158, 233
RsaNI	GTAC	2 cut(s)	157, 232
SaqAI	TTAA	1 cut(s)	33
SatI	GCNGC	1 cut(s)	386
Sau3AI	GATC	7 cut(s)	336, 373, 441, 446, 475, 514, 558
ScrFI	CCNGG	1 cut(s)	197
SfaNI	GCATC	1 cut(s)	501
Sse9I	AATT	2 cut(s)	241, 399
SsiI	CCGC	2 cut(s)	294, 385
StyD4I	CCNGG	1 cut(s)	195
TaaI	ACNGT	1 cut(s)	31
TaiI	ACGT	2 cut(s)	165, 288
TaqI	TCGA	2 cut(s)	44, 211
TasI	AATT	2 cut(s)	241, 399
TauI	GCSGC	1 cut(s)	388
TfiI	GAWTC	1 cut(s)	77
Tru1I	TTAA	1 cut(s)	33
Tru9I	TTAA	1 cut(s)	33
TseFI	GTSAC	1 cut(s)	286
Tsp45I	GTSAC	1 cut(s)	286
TspDTI	ATGAA	1 cut(s)	356
TspGWI	ACGGA	1 cut(s)	128
XmiI	GTMKAC	1 cut(s)	282
XmnI	GAANNNNTTC	1 cut(s)	486

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.