pycom12g08370
RLK Family

cysteine-rich RLK (RECEPTOR-like protein kinase) 8

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr12
OG0017871
Physical Location & Seq
Forward (+)
9571729 .. 9572297
569 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom12g08370.1

Sequence Viewer

Length: 525 bp
ATGGCCCTTCTTTACAATAAGAATGATACCAATCTGCCACTTGTACATGCAACAGGTATCTATACACCCAACTGCAATTTTACACATCATGATCCGCATTCAACATTGTATTGGATCGTGGATAGCAGGGCCACAGATCATATTTCTCACTTATCACCCAGCCATAATCACACTAGAACCCAACATGATTTTGTTGGTTTACCAAATGGTGGACAGGCTGCGATTGAATCCATTGGGTCTATTAAACTGTCATCCAAGATAACCCTTGATGGAGTTTTGCATGTACCACAATTTCGTGTGAACCTATTGTCTGTGAGTAAGTTAACTTGGGCATTGAAATGTGTTGTGATTTTCTACCCCGGTTTTTGTGTTGTGCAAGACATGGCTACGAAGAGGATGATTGGCCTGGGCAAGCAGTTTAATGGACTCTACTACCTCACTCCAACACAAAACCCTCATCTCGCCCACCATGTCAACCATACCTCGACACTGTGGCACCAACACCATTCCAGAAATTATTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_2 Retrotran_gag_3 Retrotrans_gag

Protein Analysis

175

Amino Acids

19.68

Weight (kDa)

9.05

Isoelectric Point (pI)

26.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pol_BBD PF22936 38 - 109 2e-11 Pol polyprotein, beta-barrel domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017871)

Species Orthologous Gene IDs
malus_domestica MD09G1281800.v1.1
pyrus_communis pycom12g08370 pycom15g03640 pycom15g18740 pycom15g38670
rosa_chinensis RchiOBHm_Chr1g0356321
rosa_multiflora Rmu_sc0000605.1_g000016
rosa_roxburghii Rroxscaffold_2G00133080 Rroxscaffold_4G00285200 Rroxscaffold_7G00191550
rosa_wichuraiana Rw2G001150

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 495
AccB7I CCANNNNNTGG 1 cut(s) 209
AciI CCGC 1 cut(s) 95
AclWI GGATC 2 cut(s) 86, 122
AfaI GTAC 2 cut(s) 45, 285
AfiI CCNNNNNNNGG 1 cut(s) 209
AgsI TTSAA 3 cut(s) 102, 227, 337
AjnI CCWGG 1 cut(s) 405
AlwI GGATC 2 cut(s) 86, 122
AoxI GGCC 3 cut(s) 3, 129, 403
ApeKI GCWGC 1 cut(s) 218
AspS9I GGNCC 2 cut(s) 4, 129
AsuC2I CCSGG 1 cut(s) 360
AsuHPI GGTGA 1 cut(s) 147
BanI GGYRCC 1 cut(s) 495
BbvI GCAGC 1 cut(s) 205
BccI CCATC 1 cut(s) 263
BciT130I CCWGG 1 cut(s) 407
BcnI CCSGG 1 cut(s) 360
BfaI CTAG 1 cut(s) 174
BisI GCNGC 1 cut(s) 219
BlsI GCNGC 1 cut(s) 220
Bme1390I CCNGG 2 cut(s) 360, 407
BmgT120I GGNCC 2 cut(s) 4, 129
BmiI GGNNCC 1 cut(s) 497
BmrFI CCNGG 2 cut(s) 360, 407
BpuMI CCSGG 1 cut(s) 360
BsaBI GATNNNNATC 1 cut(s) 30
BsaJI CCNNGG 2 cut(s) 358, 406
Bsc4I CCNNNNNNNGG 1 cut(s) 209
Bse8I GATNNNNATC 1 cut(s) 30
BseBI CCWGG 1 cut(s) 407
BseDI CCNNGG 2 cut(s) 358, 406
BseGI GGATG 2 cut(s) 251, 402
BseJI GATNNNNATC 1 cut(s) 30
BseLI CCNNNNNNNGG 1 cut(s) 209
BseXI GCAGC 1 cut(s) 205
BseYI CCCAGC 1 cut(s) 158
BshFI GGCC 3 cut(s) 5, 131, 405
BshNI GGYRCC 1 cut(s) 495
BsiSI CCGG 1 cut(s) 360
BslI CCNNNNNNNGG 1 cut(s) 209
BsmI GAATGC 1 cut(s) 97
BsnI GGCC 3 cut(s) 5, 131, 405
Bsp1407I TGTACA 1 cut(s) 43
Bsp143I GATC 3 cut(s) 91, 114, 136
BspACI CCGC 1 cut(s) 95
BspANI GGCC 3 cut(s) 5, 131, 405
BspHI TCATGA 1 cut(s) 88
BspLI GGNNCC 1 cut(s) 497
BspPI GGATC 2 cut(s) 86, 122
BspT107I GGYRCC 1 cut(s) 495
BsrGI TGTACA 1 cut(s) 43
BssECI CCNNGG 2 cut(s) 358, 406
BssMI GATC 3 cut(s) 91, 114, 136
Bst2UI CCWGG 1 cut(s) 407
Bst4CI ACNGT 2 cut(s) 249, 492
Bst6I CTCTTC 1 cut(s) 386
BstAUI TGTACA 1 cut(s) 43
BstC8I GCNNGC 1 cut(s) 413
BstF5I GGATG 2 cut(s) 251, 402
BstKTI GATC 3 cut(s) 94, 117, 139
BstMBI GATC 3 cut(s) 91, 114, 136
BstNI CCWGG 1 cut(s) 407
BstNSI RCATGY 2 cut(s) 50, 284
BstSCI CCNGG 2 cut(s) 358, 405
BstV1I GCAGC 1 cut(s) 205
BsuRI GGCC 3 cut(s) 5, 131, 405
BtsCI GGATG 2 cut(s) 251, 402
BtsIMutI CAGTG 1 cut(s) 488
Cac8I GCNNGC 1 cut(s) 413
CciI TCATGA 1 cut(s) 88
Cfr13I GGNCC 2 cut(s) 4, 129
Csp6I GTAC 2 cut(s) 44, 284
CviAII CATG 6 cut(s) 47, 89, 185, 281, 382, 470
CviJI RGCY 6 cut(s) 5, 131, 162, 218, 386, 405
CviKI_1 RGCY 6 cut(s) 5, 131, 162, 218, 386, 405
CviQI GTAC 2 cut(s) 44, 284
DpnI GATC 3 cut(s) 93, 116, 138
DpnII GATC 3 cut(s) 91, 114, 136
Eam1104I CTCTTC 1 cut(s) 386
EarI CTCTTC 1 cut(s) 386
EcoRII CCWGG 1 cut(s) 405
FaeI CATG 6 cut(s) 50, 92, 188, 284, 385, 473
FatI CATG 6 cut(s) 46, 88, 184, 280, 381, 469
Fnu4HI GCNGC 1 cut(s) 219
FokI GGATG 2 cut(s) 238, 409
Fsp4HI GCNGC 1 cut(s) 219
FspBI CTAG 1 cut(s) 174
GluI GCNGC 1 cut(s) 219
GsaI CCCAGC 1 cut(s) 162
HaeIII GGCC 3 cut(s) 5, 131, 405
HapII CCGG 1 cut(s) 360
Hin1II CATG 6 cut(s) 50, 92, 188, 284, 385, 473
HincII GTYRAC 2 cut(s) 324, 475
HindII GTYRAC 2 cut(s) 324, 475
HinfI GANTC 2 cut(s) 227, 426
HpaI GTTAAC 1 cut(s) 324
HpaII CCGG 1 cut(s) 360
HphI GGTGA 1 cut(s) 147
Hpy166II GTNNAC 5 cut(s) 200, 212, 301, 324, 475
Hpy188III TCNNGA 2 cut(s) 89, 510
Hpy8I GTNNAC 5 cut(s) 200, 212, 301, 324, 475
HpyAV CCTTC 1 cut(s) 17
HpyCH4III ACNGT 2 cut(s) 249, 492
HpyCH4V TGCA 4 cut(s) 50, 75, 280, 376
Hsp92II CATG 6 cut(s) 50, 92, 188, 284, 385, 473
KspAI GTTAAC 1 cut(s) 324
Kzo9I GATC 3 cut(s) 91, 114, 136
LpnPI CCDG 7 cut(s) 39, 112, 172, 200, 373, 392, 419
Lsp1109I GCAGC 1 cut(s) 205
MaeI CTAG 1 cut(s) 174
MalI GATC 3 cut(s) 93, 116, 138
MboI GATC 3 cut(s) 91, 114, 136
MboII GAAGA 1 cut(s) 403
MluCI AATT 3 cut(s) 76, 290, 514
MlyI GAGTC 1 cut(s) 420
MmeI TCCRAC 1 cut(s) 467
MnlI CCTC 4 cut(s) 387, 446, 465, 493
MseI TTAA 3 cut(s) 243, 323, 420
MslI CAYNNNNRTG 1 cut(s) 337
MspI CCGG 1 cut(s) 360
MspR9I CCNGG 2 cut(s) 360, 407
Mva1269I GAATGC 1 cut(s) 97
MvaI CCWGG 1 cut(s) 407
NciI CCSGG 1 cut(s) 360
NdeII GATC 3 cut(s) 91, 114, 136
NlaIII CATG 6 cut(s) 50, 92, 188, 284, 385, 473
NlaIV GGNNCC 1 cut(s) 497
NspI RCATGY 2 cut(s) 50, 284
PagI TCATGA 1 cut(s) 88
PctI GAATGC 1 cut(s) 97
PfeI GAWTC 1 cut(s) 227
PflMI CCANNNNNTGG 1 cut(s) 209
PkrI GCNGC 1 cut(s) 220
PleI GAGTC 1 cut(s) 420
PpsI GAGTC 1 cut(s) 420
Psp6I CCWGG 1 cut(s) 405
PspFI CCCAGC 1 cut(s) 158
PspGI CCWGG 1 cut(s) 405
PspN4I GGNNCC 1 cut(s) 497
PspPI GGNCC 2 cut(s) 4, 129
RsaI GTAC 2 cut(s) 45, 285
RsaNI GTAC 2 cut(s) 44, 284
RseI CAYNNNNRTG 1 cut(s) 337
SaqAI TTAA 3 cut(s) 243, 323, 420
SatI GCNGC 1 cut(s) 219
Sau3AI GATC 3 cut(s) 91, 114, 136
Sau96I GGNCC 2 cut(s) 4, 129
SchI GAGTC 1 cut(s) 420
ScrFI CCNGG 2 cut(s) 360, 407
SetI ASST 4 cut(s) 58, 306, 438, 485
SmiMI CAYNNNNRTG 1 cut(s) 337
Sse9I AATT 3 cut(s) 76, 290, 514
SsiI CCGC 1 cut(s) 95
SspMI CTAG 1 cut(s) 174
StyD4I CCNGG 2 cut(s) 358, 405
TaaI ACNGT 2 cut(s) 249, 492
TaqI TCGA 1 cut(s) 485
TasI AATT 3 cut(s) 76, 290, 514
TatI WGTACW 1 cut(s) 43
TfiI GAWTC 1 cut(s) 227
Tru1I TTAA 3 cut(s) 243, 323, 420
Tru9I TTAA 3 cut(s) 243, 323, 420
TscAI CASTG 1 cut(s) 495
TseI GCWGC 1 cut(s) 218
TspRI CASTG 1 cut(s) 495
Van91I CCANNNNNTGG 1 cut(s) 209
XceI RCATGY 2 cut(s) 50, 284
XspI CTAG 1 cut(s) 174
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.