Rroxscaffold_4G00285200
RLK Family

Cysteine-rich RLK (RECEPTOR-like protein kinase) 8

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0017871
Physical Location & Seq
Reverse (-)
6606117 .. 6608150
2034 bp
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UTR
Exon/CDS
Intron
Rroxscaffold_4G00285200.1

Sequence Viewer

Length: 366 bp
ATGGAAGGTATCGATTATCATGACACTTTTTCCCCTACTACAAAGATTATTTCTGTTCCCTGCTTGTTATCTTTGGCTGCTCGCTTAAAATTGGTCTATCCATCGTTAGATGTCAATAATGCTTTCTTACATGGTGATCTTGATGAGGAAATTTTCATGTCCCCTCATCTTGGTCTTCGGCGACAAGGGGAGAACTTAGTTTGTCGCCTTAACAAGTCTTTATATGGTTTAAAACAAGCCTCTCGGGAATGGTTTGCAAAATTCTCTACGATGCTATTCGATCAGCGGGGTATATTCGGTCTAAAGCGATTACTCATTATTCACTCGAAAACGGGAAGTCATTCTTGCTTTATTGATATATGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_2 Retrotran_gag_2 Retrotran_gag_3

Protein Analysis

121

Amino Acids

13.76

Weight (kDa)

8.4

Isoelectric Point (pI)

41.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVT_2 PF07727 2 - 95 3.6e-23 Reverse transcriptase (RNA-dependent DNA polymerase)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017871)

Species Orthologous Gene IDs
malus_domestica MD09G1281800.v1.1
pyrus_communis pycom12g08370 pycom15g03640 pycom15g18740 pycom15g38670
rosa_chinensis RchiOBHm_Chr1g0356321
rosa_multiflora Rmu_sc0000605.1_g000016
rosa_roxburghii Rroxscaffold_2G00133080 Rroxscaffold_4G00285200 Rroxscaffold_7G00191550
rosa_wichuraiana Rw2G001150

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 286
AcsI RAATTY 2 cut(s) 150, 260
AfiI CCNNNNNNNGG 1 cut(s) 170
Ama87I CYCGRG 1 cut(s) 243
ApeKI GCWGC 1 cut(s) 77
ApoI RAATTY 2 cut(s) 150, 260
Asp700I GAANNNNTTC 1 cut(s) 340
AsuHPI GGTGA 1 cut(s) 146
AvaI CYCGRG 1 cut(s) 243
BbsI GAAGAC 1 cut(s) 167
BbvI GCAGC 1 cut(s) 64
BccI CCATC 1 cut(s) 109
BisI GCNGC 1 cut(s) 78
BlsI GCNGC 1 cut(s) 79
BmeT110I CYCGRG 1 cut(s) 243
BmsI GCATC 1 cut(s) 261
BpiI GAAGAC 1 cut(s) 167
Bsa29I ATCGAT 1 cut(s) 12
Bsc4I CCNNNNNNNGG 1 cut(s) 170
BseCI ATCGAT 1 cut(s) 12
BseLI CCNNNNNNNGG 1 cut(s) 170
BseXI GCAGC 1 cut(s) 64
BshVI ATCGAT 1 cut(s) 12
BsiHKCI CYCGRG 1 cut(s) 243
BslFI GGGAC 1 cut(s) 145
BslI CCNNNNNNNGG 1 cut(s) 170
BsmFI GGGAC 1 cut(s) 145
BsoBI CYCGRG 1 cut(s) 243
Bsp143I GATC 2 cut(s) 136, 280
BspACI CCGC 1 cut(s) 286
BspDI ATCGAT 1 cut(s) 12
BspHI TCATGA 1 cut(s) 19
BssMI GATC 2 cut(s) 136, 280
BstC8I GCNNGC 1 cut(s) 82
BstDEI CTNAG 1 cut(s) 196
BstKTI GATC 2 cut(s) 139, 283
BstMBI GATC 2 cut(s) 136, 280
BstV1I GCAGC 1 cut(s) 64
BstV2I GAAGAC 1 cut(s) 167
Bsu15I ATCGAT 1 cut(s) 12
BsuTUI ATCGAT 1 cut(s) 12
Cac8I GCNNGC 1 cut(s) 82
CciI TCATGA 1 cut(s) 19
ClaI ATCGAT 1 cut(s) 12
CviAII CATG 3 cut(s) 20, 131, 157
CviJI RGCY 2 cut(s) 77, 239
CviKI_1 RGCY 2 cut(s) 77, 239
DdeI CTNAG 1 cut(s) 196
DpnI GATC 2 cut(s) 138, 282
DpnII GATC 2 cut(s) 136, 280
DraI TTTAAA 1 cut(s) 231
Eco88I CYCGRG 1 cut(s) 243
FaeI CATG 3 cut(s) 23, 134, 160
FaiI YATR 8 cut(s) 21, 132, 158, 223, 225, 293, 359, 361
FalI AAGNNNNNCTT 2 cut(s) 328, 360
FaqI GGGAC 1 cut(s) 145
FatI CATG 3 cut(s) 19, 130, 156
FauI CCCGC 1 cut(s) 279
Fnu4HI GCNGC 1 cut(s) 78
Fsp4HI GCNGC 1 cut(s) 78
GluI GCNGC 1 cut(s) 78
Hin1II CATG 3 cut(s) 23, 134, 160
HphI GGTGA 1 cut(s) 146
Hpy188III TCNNGA 3 cut(s) 20, 140, 245
HpyCH4V TGCA 1 cut(s) 257
HpyF3I CTNAG 1 cut(s) 196
Hsp92II CATG 3 cut(s) 23, 134, 160
Kzo9I GATC 2 cut(s) 136, 280
LpnPI CCDG 1 cut(s) 73
Lsp1109I GCAGC 1 cut(s) 64
LweI GCATC 1 cut(s) 261
MalI GATC 2 cut(s) 138, 282
MboI GATC 2 cut(s) 136, 280
MboII GAAGA 1 cut(s) 167
MluCI AATT 3 cut(s) 89, 150, 260
MnlI CCTC 3 cut(s) 139, 174, 250
MroXI GAANNNNTTC 1 cut(s) 340
MseI TTAA 3 cut(s) 86, 210, 230
MspA1I CMGCKG 1 cut(s) 286
NdeII GATC 2 cut(s) 136, 280
NlaIII CATG 3 cut(s) 23, 134, 160
PagI TCATGA 1 cut(s) 19
PdmI GAANNNNTTC 1 cut(s) 340
PkrI GCNGC 1 cut(s) 79
SaqAI TTAA 3 cut(s) 86, 210, 230
SatI GCNGC 1 cut(s) 78
Sau3AI GATC 2 cut(s) 136, 280
SetI ASST 1 cut(s) 10
SfaNI GCATC 1 cut(s) 261
Sse9I AATT 3 cut(s) 89, 150, 260
SsiI CCGC 1 cut(s) 286
TaqI TCGA 3 cut(s) 12, 279, 326
TaqII GACCGA 1 cut(s) 287
TasI AATT 3 cut(s) 89, 150, 260
Tru1I TTAA 3 cut(s) 86, 210, 230
Tru9I TTAA 3 cut(s) 86, 210, 230
TseI GCWGC 1 cut(s) 77
TspDTI ATGAA 1 cut(s) 145
XapI RAATTY 2 cut(s) 150, 260
XmnI GAANNNNTTC 1 cut(s) 340
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.