gag-polypeptide of LTR copia-type
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| Species | Orthologous Gene IDs |
|---|---|
| malus_domestica | MD09G1281800.v1.1 |
| pyrus_communis | pycom12g08370 pycom15g03640 pycom15g18740 pycom15g38670 |
| rosa_chinensis | RchiOBHm_Chr1g0356321 |
| rosa_multiflora | Rmu_sc0000605.1_g000016 |
| rosa_roxburghii | Rroxscaffold_2G00133080 Rroxscaffold_4G00285200 Rroxscaffold_7G00191550 |
| rosa_wichuraiana | Rw2G001150 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AclWI | GGATC | 2 cut(s) | 198, 211 |
| AfaI | GTAC | 1 cut(s) | 93 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 302 |
| AgsI | TTSAA | 1 cut(s) | 283 |
| AjiI | CACGTC | 1 cut(s) | 326 |
| AluBI | AGCT | 2 cut(s) | 196, 266 |
| AluI | AGCT | 2 cut(s) | 196, 266 |
| Alw26I | GTCTC | 1 cut(s) | 73 |
| AlwI | GGATC | 2 cut(s) | 198, 211 |
| AspLEI | GCGC | 1 cut(s) | 188 |
| AsuHPI | GGTGA | 1 cut(s) | 157 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 101, 134 |
| BamHI | GGATCC | 1 cut(s) | 203 |
| BauI | CACGAG | 1 cut(s) | 218 |
| BcoDI | GTCTC | 1 cut(s) | 73 |
| BfaI | CTAG | 2 cut(s) | 200, 257 |
| BmgBI | CACGTC | 1 cut(s) | 326 |
| BmiI | GGNNCC | 1 cut(s) | 205 |
| BmsI | GCATC | 1 cut(s) | 27 |
| BplI | GAGNNNNNCTC | 1 cut(s) | 37 |
| BpuEI | CTTGAG | 1 cut(s) | 19 |
| BsaJI | CCNNGG | 1 cut(s) | 165 |
| BsaWI | WCCGGW | 1 cut(s) | 114 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 263, 293 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 302 |
| BseDI | CCNNGG | 1 cut(s) | 165 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 302 |
| BseRI | GAGGAG | 2 cut(s) | 79, 206 |
| BsiSI | CCGG | 1 cut(s) | 115 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 302 |
| BsmAI | GTCTC | 1 cut(s) | 73 |
| BsmI | GAATGC | 2 cut(s) | 228, 244 |
| Bsp143I | GATC | 1 cut(s) | 203 |
| BspLI | GGNNCC | 1 cut(s) | 205 |
| BspPI | GGATC | 2 cut(s) | 198, 211 |
| BssECI | CCNNGG | 1 cut(s) | 165 |
| BssMI | GATC | 1 cut(s) | 203 |
| BssSI | CACGAG | 1 cut(s) | 218 |
| BssT1I | CCWWGG | 1 cut(s) | 165 |
| Bst2BI | CACGAG | 1 cut(s) | 218 |
| BstC8I | GCNNGC | 2 cut(s) | 244, 264 |
| BstDEI | CTNAG | 1 cut(s) | 129 |
| BstHHI | GCGC | 1 cut(s) | 188 |
| BstKTI | GATC | 1 cut(s) | 206 |
| BstMAI | GTCTC | 1 cut(s) | 73 |
| BstMBI | GATC | 1 cut(s) | 203 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 185 |
| BstNSI | RCATGY | 1 cut(s) | 143 |
| BstX2I | RGATCY | 1 cut(s) | 203 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 172 |
| BstYI | RGATCY | 1 cut(s) | 203 |
| BtgZI | GCGATG | 1 cut(s) | 194 |
| BtrI | CACGTC | 1 cut(s) | 326 |
| BtsI | GCAGTG | 1 cut(s) | 320 |
| BtsIMutI | CAGTG | 1 cut(s) | 320 |
| Cac8I | GCNNGC | 2 cut(s) | 244, 264 |
| CfoI | GCGC | 1 cut(s) | 188 |
| Csp6I | GTAC | 1 cut(s) | 92 |
| CviAII | CATG | 1 cut(s) | 140 |
| CviJI | RGCY | 5 cut(s) | 40, 196, 246, 266, 338 |
| CviKI_1 | RGCY | 5 cut(s) | 40, 196, 246, 266, 338 |
| CviQI | GTAC | 1 cut(s) | 92 |
| DdeI | CTNAG | 1 cut(s) | 129 |
| DpnI | GATC | 1 cut(s) | 205 |
| DpnII | GATC | 1 cut(s) | 203 |
| Eco130I | CCWWGG | 1 cut(s) | 165 |
| EcoT14I | CCWWGG | 1 cut(s) | 165 |
| ErhI | CCWWGG | 1 cut(s) | 165 |
| FaeI | CATG | 1 cut(s) | 143 |
| FaiI | YATR | 3 cut(s) | 141, 212, 341 |
| FatI | CATG | 1 cut(s) | 139 |
| FspBI | CTAG | 2 cut(s) | 200, 257 |
| GlaI | GCGC | 1 cut(s) | 187 |
| HapII | CCGG | 1 cut(s) | 115 |
| HhaI | GCGC | 1 cut(s) | 188 |
| Hin1II | CATG | 1 cut(s) | 143 |
| Hin6I | GCGC | 1 cut(s) | 186 |
| HinP1I | GCGC | 1 cut(s) | 186 |
| HindIII | AAGCTT | 1 cut(s) | 264 |
| HinfI | GANTC | 3 cut(s) | 81, 161, 272 |
| HpaII | CCGG | 1 cut(s) | 115 |
| HphI | GGTGA | 1 cut(s) | 157 |
| Hpy166II | GTNNAC | 1 cut(s) | 217 |
| Hpy188I | TCNGA | 3 cut(s) | 25, 60, 234 |
| Hpy188III | TCNNGA | 1 cut(s) | 218 |
| Hpy8I | GTNNAC | 1 cut(s) | 217 |
| HpyCH4IV | ACGT | 1 cut(s) | 325 |
| HpyCH4V | TGCA | 2 cut(s) | 242, 343 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 185 |
| HpyF3I | CTNAG | 1 cut(s) | 129 |
| HpySE526I | ACGT | 1 cut(s) | 325 |
| Hsp92II | CATG | 1 cut(s) | 143 |
| HspAI | GCGC | 1 cut(s) | 186 |
| Kzo9I | GATC | 1 cut(s) | 203 |
| LmnI | GCTCC | 1 cut(s) | 193 |
| LpnPI | CCDG | 2 cut(s) | 128, 314 |
| LweI | GCATC | 1 cut(s) | 27 |
| MaeI | CTAG | 2 cut(s) | 200, 257 |
| MaeII | ACGT | 1 cut(s) | 325 |
| MaeIII | GTNAC | 2 cut(s) | 117, 145 |
| MalI | GATC | 1 cut(s) | 205 |
| MboI | GATC | 1 cut(s) | 203 |
| MboII | GAAGA | 2 cut(s) | 118, 247 |
| MflI | RGATCY | 1 cut(s) | 203 |
| MlyI | GAGTC | 2 cut(s) | 75, 281 |
| MmeI | TCCRAC | 1 cut(s) | 48 |
| MnlI | CCTC | 6 cut(s) | 57, 151, 169, 184, 218, 328 |
| MspI | CCGG | 1 cut(s) | 115 |
| Mva1269I | GAATGC | 2 cut(s) | 228, 244 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 185 |
| NdeII | GATC | 1 cut(s) | 203 |
| NlaIII | CATG | 1 cut(s) | 143 |
| NlaIV | GGNNCC | 1 cut(s) | 205 |
| NmuCI | GTSAC | 2 cut(s) | 117, 145 |
| NspI | RCATGY | 1 cut(s) | 143 |
| PctI | GAATGC | 2 cut(s) | 228, 244 |
| PfeI | GAWTC | 1 cut(s) | 161 |
| PleI | GAGTC | 2 cut(s) | 75, 280 |
| PpsI | GAGTC | 2 cut(s) | 75, 280 |
| PspN4I | GGNNCC | 1 cut(s) | 205 |
| PsuI | RGATCY | 1 cut(s) | 203 |
| RsaI | GTAC | 1 cut(s) | 93 |
| RsaNI | GTAC | 1 cut(s) | 92 |
| Sau3AI | GATC | 1 cut(s) | 203 |
| SchI | GAGTC | 2 cut(s) | 75, 281 |
| SetI | ASST | 5 cut(s) | 198, 268, 307, 328, 333 |
| SfaNI | GCATC | 1 cut(s) | 27 |
| SmlI | CTYRAG | 1 cut(s) | 34 |
| SmoI | CTYRAG | 1 cut(s) | 34 |
| SspI | AATATT | 1 cut(s) | 286 |
| SspMI | CTAG | 2 cut(s) | 200, 257 |
| StyI | CCWWGG | 1 cut(s) | 165 |
| TaiI | ACGT | 1 cut(s) | 328 |
| TaqI | TCGA | 2 cut(s) | 84, 333 |
| TfiI | GAWTC | 1 cut(s) | 161 |
| TscAI | CASTG | 1 cut(s) | 320 |
| TseFI | GTSAC | 2 cut(s) | 117, 145 |
| Tsp45I | GTSAC | 2 cut(s) | 117, 145 |
| TspDTI | ATGAA | 2 cut(s) | 17, 21 |
| TspRI | CASTG | 1 cut(s) | 320 |
| XceI | RCATGY | 1 cut(s) | 143 |
| XspI | CTAG | 2 cut(s) | 200, 257 |