pycom12g12630

Dirigent protein 17-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr12
OG0010578
Physical Location & Seq
Forward (+)
15090190 .. 15090882
693 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 693 bp
ATGGAAAGTCCCAGCAACGATCAGAAAGTAGAGCCTTCATCCGCAGTGGTTTATGAGTTACCAGGGGAGCCTGCTATTGTCATTGACGGAGTGCCCGAAATTCCATCAACTGAAAGCACTTGTTCTGTCTCTGATGCTGCTCATGATGCAGAATTCCGTGGAAATACTGACTTTGGTGAGTGGTTGGAAGGAAGAGAAGTGAGGAAGTTGTTTGGAGAGCAAAACTATTTTGGCACAGTGACTGAGTATGATAAAGAAGCAGGCTGGTACAGGGTGGTGTATGAAGATGGTGACTTTGAAGATCTCGACTGGACTGAGTTAGAACAAGTGCTACTGCCCCTAGACATTATGGTTCCCCTGAAAACAGTAGCCCTAAAAACTCTCAGGAAAAGCAAGAAATTCCTCCGTAAACCTCGGAACGTTATCGCTGGATCTCAAACACAAAAGGCCAAAACCAAGGGAAGTAGGGGAAGGAAGGCCACCTCAGCAATTGAAGGTGCTTCAAAGATTGACTTCAAAGTAGGTGAAGATGCTTCAATGGTGGACTCCAAAGTACTTGAAGATGCTTCGATGGTGGACTCCAAAGTAGCTGAAGCTGCTTTAATGACAGACTCCAAAGCACCTGAATATGCTTTAATGACGGACTCCAAGGCAATTGAAGACGCTTCCATGATGAAGTCCGATGGTTTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AT_hook LBR_tudor

Protein Analysis

231

Amino Acids

25.28

Weight (kDa)

4.65

Isoelectric Point (pI)

31.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PTM_DIR17_Tudor PF21743 64 - 111 7.9e-25 PTM/DIR17-like, Tudor domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 42
AclI AACGTT 1 cut(s) 420
AclWI GGATC 1 cut(s) 439
AcsI RAATTY 3 cut(s) 99, 152, 398
AcuI CTGAAG 1 cut(s) 612
AfaI GTAC 2 cut(s) 269, 555
AgsI TTSAA 7 cut(s) 299, 494, 504, 517, 537, 560, 659
AjnI CCWGG 1 cut(s) 61
AluBI AGCT 2 cut(s) 590, 596
AluI AGCT 2 cut(s) 590, 596
Alw26I GTCTC 1 cut(s) 133
AlwI GGATC 1 cut(s) 439
AlwNI CAGNNNCTG 1 cut(s) 242
AoxI GGCC 2 cut(s) 447, 477
ApeKI GCWGC 2 cut(s) 137, 596
ApoI RAATTY 3 cut(s) 99, 152, 398
AsuHPI GGTGA 3 cut(s) 188, 302, 536
BaeGI GKGCMC 1 cut(s) 96
BbsI GAAGAC 1 cut(s) 666
BbvCI CCTCAGC 1 cut(s) 484
BbvI GCAGC 2 cut(s) 124, 583
BccI CCATC 4 cut(s) 112, 281, 565, 677
BciT130I CCWGG 1 cut(s) 63
BcoDI GTCTC 1 cut(s) 133
BfaI CTAG 1 cut(s) 341
BglII AGATCT 1 cut(s) 301
BisI GCNGC 2 cut(s) 138, 597
BlsI GCNGC 2 cut(s) 139, 598
BmcAI AGTACT 1 cut(s) 555
Bme1390I CCNGG 1 cut(s) 63
BmiI GGNNCC 2 cut(s) 69, 354
BmrFI CCNGG 1 cut(s) 63
BmsI GCATC 4 cut(s) 124, 136, 520, 553
BpiI GAAGAC 1 cut(s) 666
Bpu10I CCTNAGC 1 cut(s) 484
BsaJI CCNNGG 5 cut(s) 62, 157, 413, 456, 648
Bse1I ACTGG 1 cut(s) 314
BseBI CCWGG 1 cut(s) 63
BseDI CCNNGG 5 cut(s) 62, 157, 413, 456, 648
BseGI GGATG 1 cut(s) 38
BseMII CTCAG 4 cut(s) 234, 306, 397, 498
BseNI ACTGG 1 cut(s) 314
BseSI GKGCMC 1 cut(s) 96
BseXI GCAGC 2 cut(s) 124, 583
BseYI CCCAGC 1 cut(s) 11
BshFI GGCC 2 cut(s) 449, 479
BsmAI GTCTC 1 cut(s) 133
BsnI GGCC 2 cut(s) 449, 479
Bsp1286I GDGCHC 1 cut(s) 96
Bsp143I GATC 3 cut(s) 19, 301, 431
BspACI CCGC 1 cut(s) 42
BspANI GGCC 2 cut(s) 449, 479
BspCNI CTCAG 4 cut(s) 235, 307, 396, 497
BspHI TCATGA 1 cut(s) 142
BspLI GGNNCC 2 cut(s) 69, 354
BspPI GGATC 1 cut(s) 439
BsrI ACTGG 1 cut(s) 314
BssECI CCNNGG 5 cut(s) 62, 157, 413, 456, 648
BssMI GATC 3 cut(s) 19, 301, 431
BssT1I CCWWGG 2 cut(s) 456, 648
Bst2UI CCWGG 1 cut(s) 63
Bst4CI ACNGT 2 cut(s) 238, 367
Bst6I CTCTTC 1 cut(s) 187
BstC8I GCNNGC 2 cut(s) 72, 262
BstDEI CTNAG 4 cut(s) 243, 315, 383, 484
BstDSI CCRYGG 1 cut(s) 157
BstF5I GGATG 1 cut(s) 38
BstKTI GATC 3 cut(s) 22, 304, 434
BstMAI GTCTC 1 cut(s) 133
BstMBI GATC 3 cut(s) 19, 301, 431
BstMWI GCNNNNNNNGC 3 cut(s) 146, 485, 596
BstNI CCWGG 1 cut(s) 63
BstSCI CCNGG 1 cut(s) 61
BstSLI GKGCMC 1 cut(s) 96
BstV1I GCAGC 2 cut(s) 124, 583
BstV2I GAAGAC 1 cut(s) 666
BstX2I RGATCY 2 cut(s) 301, 431
BstYI RGATCY 2 cut(s) 301, 431
BsuRI GGCC 2 cut(s) 449, 479
BtgI CCRYGG 1 cut(s) 157
BtsCI GGATG 1 cut(s) 38
BtsI GCAGTG 1 cut(s) 51
BtsIMutI CAGTG 2 cut(s) 51, 243
Cac8I GCNNGC 2 cut(s) 72, 262
CaiI CAGNNNCTG 1 cut(s) 242
CciI TCATGA 1 cut(s) 142
CseI GACGC 1 cut(s) 671
Csp6I GTAC 2 cut(s) 268, 554
CviAII CATG 2 cut(s) 143, 670
CviJI RGCY 8 cut(s) 34, 70, 264, 371, 449, 479, 590, 596
CviKI_1 RGCY 8 cut(s) 34, 70, 264, 371, 449, 479, 590, 596
CviQI GTAC 2 cut(s) 268, 554
DdeI CTNAG 4 cut(s) 243, 315, 383, 484
DpnI GATC 3 cut(s) 21, 303, 433
DpnII GATC 3 cut(s) 19, 301, 431
Eam1104I CTCTTC 1 cut(s) 187
EarI CTCTTC 1 cut(s) 187
Eco130I CCWWGG 2 cut(s) 456, 648
Eco57I CTGAAG 1 cut(s) 612
EcoRI GAATTC 1 cut(s) 152
EcoRII CCWGG 1 cut(s) 61
EcoT14I CCWWGG 2 cut(s) 456, 648
ErhI CCWWGG 2 cut(s) 456, 648
FaeI CATG 2 cut(s) 146, 673
FaiI YATR 7 cut(s) 54, 144, 249, 282, 350, 630, 671
FalI AAGNNNNNCTT 2 cut(s) 497, 529
FatI CATG 2 cut(s) 142, 669
Fnu4HI GCNGC 2 cut(s) 138, 597
FokI GGATG 1 cut(s) 25
Fsp4HI GCNGC 2 cut(s) 138, 597
FspBI CTAG 1 cut(s) 341
GluI GCNGC 2 cut(s) 138, 597
GsaI CCCAGC 1 cut(s) 15
HaeIII GGCC 2 cut(s) 449, 479
HgaI GACGC 1 cut(s) 671
Hin1II CATG 2 cut(s) 146, 673
HinfI GANTC 4 cut(s) 545, 578, 611, 644
HphI GGTGA 3 cut(s) 188, 302, 536
Hpy166II GTNNAC 3 cut(s) 410, 544, 577
Hpy188I TCNGA 4 cut(s) 24, 133, 417, 682
Hpy188III TCNNGA 3 cut(s) 143, 305, 385
Hpy8I GTNNAC 3 cut(s) 410, 544, 577
HpyAV CCTTC 5 cut(s) 45, 182, 465, 469, 488
HpyCH4III ACNGT 2 cut(s) 238, 367
HpyCH4IV ACGT 1 cut(s) 420
HpyCH4V TGCA 1 cut(s) 149
HpyF10VI GCNNNNNNNGC 3 cut(s) 146, 485, 596
HpyF3I CTNAG 4 cut(s) 243, 315, 383, 484
HpySE526I ACGT 1 cut(s) 420
Hsp92II CATG 2 cut(s) 146, 673
Kzo9I GATC 3 cut(s) 19, 301, 431
LmnI GCTCC 1 cut(s) 67
Lsp1109I GCAGC 2 cut(s) 124, 583
LweI GCATC 4 cut(s) 124, 136, 520, 553
MaeI CTAG 1 cut(s) 341
MaeII ACGT 1 cut(s) 420
MaeIII GTNAC 3 cut(s) 57, 238, 290
MalI GATC 3 cut(s) 21, 303, 433
MboI GATC 3 cut(s) 19, 301, 431
MboII GAAGA 6 cut(s) 204, 296, 311, 539, 572, 671
MfeI CAATTG 2 cut(s) 489, 654
MflI RGATCY 2 cut(s) 301, 431
MhlI GDGCHC 1 cut(s) 96
MluCI AATT 5 cut(s) 99, 152, 398, 489, 654
MlyI GAGTC 4 cut(s) 539, 572, 605, 638
MmeI TCCRAC 1 cut(s) 165
MnlI CCTC 4 cut(s) 195, 413, 423, 493
MseI TTAA 2 cut(s) 602, 635
MspR9I CCNGG 1 cut(s) 63
MunI CAATTG 2 cut(s) 489, 654
MvaI CCWGG 1 cut(s) 63
MwoI GCNNNNNNNGC 3 cut(s) 146, 485, 596
NdeII GATC 3 cut(s) 19, 301, 431
NlaIII CATG 2 cut(s) 146, 673
NlaIV GGNNCC 2 cut(s) 69, 354
NmuCI GTSAC 2 cut(s) 238, 290
PagI TCATGA 1 cut(s) 142
PcsI WCGNNNNNNNCGW 1 cut(s) 93
PkrI GCNGC 2 cut(s) 139, 598
PleI GAGTC 4 cut(s) 539, 572, 605, 638
PpsI GAGTC 4 cut(s) 539, 572, 605, 638
Psp1406I AACGTT 1 cut(s) 420
Psp6I CCWGG 1 cut(s) 61
PspFI CCCAGC 1 cut(s) 11
PspGI CCWGG 1 cut(s) 61
PspN4I GGNNCC 2 cut(s) 69, 354
PsrI GAACNNNNNNTAC 2 cut(s) 315, 347
PstNI CAGNNNCTG 1 cut(s) 242
PsuI RGATCY 2 cut(s) 301, 431
RsaI GTAC 2 cut(s) 269, 555
RsaNI GTAC 2 cut(s) 268, 554
SaqAI TTAA 2 cut(s) 602, 635
SatI GCNGC 2 cut(s) 138, 597
Sau3AI GATC 3 cut(s) 19, 301, 431
ScaI AGTACT 1 cut(s) 555
SchI GAGTC 4 cut(s) 539, 572, 605, 638
ScrFI CCNGG 1 cut(s) 63
SduI GDGCHC 1 cut(s) 96
SetI ASST 8 cut(s) 415, 423, 485, 499, 526, 592, 598, 625
SfaNI GCATC 4 cut(s) 124, 136, 520, 553
Sse9I AATT 5 cut(s) 99, 152, 398, 489, 654
SsiI CCGC 1 cut(s) 42
SspMI CTAG 1 cut(s) 341
StyD4I CCNGG 1 cut(s) 61
StyI CCWWGG 2 cut(s) 456, 648
TaaI ACNGT 2 cut(s) 238, 367
TaiI ACGT 1 cut(s) 423
TaqI TCGA 2 cut(s) 306, 569
TasI AATT 5 cut(s) 99, 152, 398, 489, 654
TatI WGTACW 1 cut(s) 553
Tru1I TTAA 2 cut(s) 602, 635
Tru9I TTAA 2 cut(s) 602, 635
TscAI CASTG 2 cut(s) 51, 243
TseFI GTSAC 2 cut(s) 238, 290
TseI GCWGC 2 cut(s) 137, 596
Tsp45I GTSAC 2 cut(s) 238, 290
TspDTI ATGAA 3 cut(s) 27, 297, 689
TspGWI ACGGA 4 cut(s) 102, 146, 395, 656
TspRI CASTG 2 cut(s) 51, 243
XapI RAATTY 3 cut(s) 99, 152, 398
XspI CTAG 1 cut(s) 341
ZrmI AGTACT 1 cut(s) 555
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.