Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0009899

Physical Location & Seq

Genomic Coordinates Forward (+)

18708480 .. 18711669

Gene Structure 3190 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1041 bp

ATGTCGGACGAGGAGAGAGAGGAGAAGGAGCTGGATCTCACATCTCCGGAAGTCGTCACCAAATACAAGAGTGCCGCTGAAATTATTAACAAGGCTCTGCAGCTGGTAATATCCGAATGCAAACCGAAAGCGAAGATTGTGGACCTTTGTGAGAAAGGGGATTCATACATCAGAGAACAAACTGGCAACGTGTACAAAAATGTGAAGAAGAAGATCGAACGAGGCGTTGCCTTCCCGACCTGCATTTCTGTGAACAACACTGTATGCCATTTCTCTCCTCTTGCCAGTGATGAGTCAGTGTTGGAAGAAGGCGATATTCTGAAGATTGATTTGGGCTGTCATATTGATGGGTTCATTGCCATAGTCGCACATACTCATGTTCTTCAAGCAGGACCGGTTACAGGAAGGGCTGCTGATGTTATTGCAGCTGCTAATACTGCTGCTGAAGTTGCATTAAGGCTGGTTAGGCCAGGGAGAAAGAACAAAGATGTAACAGAGGCAATACAAAAGGTTGCAGCAGCTTACGACTGCAAAATTGTTGAAGGTGTTCTTAGTCATCAGCTCAAGCAGTTTGTGATAGACGGGAACAAGGTCATATTAAGTGTTTCTAATCCAGATACAAGAGTTGACGATGCAGAATTTGAGGAGAATGAAGTTTATGCAGTTGATATAGTCGCAAGCACTGGTGAAGGCAAGCCTAAGTTGCTGGATGAGAAACAGACGACAATCTATAAACGAGCTGTTGACAAGAGCTACCACTTGAAGATGAAAGCTTCTAGGTTTATTTTCAGCGAAATTAGCCAGAATTTTCCCATCATGCCATTCACTGCTAGAGCTTTGGAAGAGAAGAGGGCTAGGCTTGGTTTACTTGAATGCGTCAACCACGAGCTTTTGCAGCCATATCCTGTTCTGCACGAGAAGCCTGGTGACTTTGTTGCTCATATCAAGTTCACCGTCTTGCTAATGCCAAATGGATCAGACCGGATCACATCTCATCCTGTACAGGAGCTGCAGCCCACTAAACAAGTAGATCGATCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001558 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005886 GO:0006355 GO:0007049 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009735 GO:0009755 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0010941 GO:0016020 GO:0019219 GO:0019222 GO:0019899 GO:0022402 GO:0023052 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031625 GO:0031974 GO:0031981 GO:0032870 GO:0032991 GO:0040008 GO:0042221 GO:0042981 GO:0043066 GO:0043067 GO:0043069 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044389 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0044770 GO:0044843 GO:0045595 GO:0045597 GO:0045892 GO:0045934 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051128 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051302 GO:0051716 GO:0060255 GO:0060548 GO:0065007 GO:0070013 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071944 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1902679 GO:1903506 GO:1903507 GO:1990904 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_M24

Protein Analysis

347

Amino Acids

38.37

Weight (kDa)

5.98

Isoelectric Point (pI)

41.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_M24	PF00557	21 - 222	2.7e-21	Metallopeptidase family M24

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009899)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G51800 AT3G51800 AT3G51800
fragaria_vesca	FvH4_6g11120 FvH4_6g11120 FvH4_6g11120
malus_domestica	MD00G1062200.v1.1 MD12G1172200.v1.1
prunus_persica	Prupe.6G280500_v2.0.a1 Prupe.6G280500_v2.0.a1
pyrus_communis	pycom04g14310 pycom12g16340
rosa_chinensis	RchiOBHm_Chr3g0462561
rosa_laevigata	RLG00000024848
rosa_roxburghii	Rroxscaffold_6G00417390
rosa_rugosa	Rorug03G0057600 Rorug03G0057600
rosa_samantha	Rh3AG115600 Rh3CG122500 Rh3DG121200
rosa_wichuraiana	Rw3G009800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	248
AccIII	TCCGGA	1 cut(s)	46
AciI	CCGC	1 cut(s)	75
AclWI	GGATC	4 cut(s)	42, 982, 992, 1029
AcsI	RAATTY	2 cut(s)	638, 805
AcuI	CTGAAG	2 cut(s)	341, 465
AfaI	GTAC	2 cut(s)	194, 1002
AfiI	CCNNNNNNNGG	1 cut(s)	401
AflIII	ACRYGT	1 cut(s)	189
AgeI	ACCGGT	1 cut(s)	394
AgsI	TTSAA	4 cut(s)	386, 542, 763, 872
AjnI	CCWGG	2 cut(s)	469, 922
AjuI	GAANNNNNNNTTGG	2 cut(s)	314, 346
AlwI	GGATC	4 cut(s)	42, 982, 992, 1029
AlwNI	CAGNNNCTG	1 cut(s)	1009
Aor13HI	TCCGGA	1 cut(s)	46
AoxI	GGCC	1 cut(s)	467
ApoI	RAATTY	2 cut(s)	638, 805
AsiGI	ACCGGT	1 cut(s)	394
Asp700I	GAANNNNTTC	1 cut(s)	546
AspS9I	GGNCC	2 cut(s)	142, 392
AsuHPI	GGTGA	4 cut(s)	49, 698, 938, 943
AvaII	GGWCC	2 cut(s)	142, 392
BaeI	ACNNNNGTAYC	2 cut(s)	609, 642
BauI	CACGAG	2 cut(s)	884, 914
BccI	CCATC	2 cut(s)	341, 821
BciT130I	CCWGG	2 cut(s)	471, 924
BfaI	CTAG	3 cut(s)	777, 831, 855
BfmI	CTRYAG	2 cut(s)	98, 1010
BfuAI	ACCTGC	1 cut(s)	248
Bme1390I	CCNGG	2 cut(s)	471, 924
Bme18I	GGWCC	2 cut(s)	142, 392
BmgT120I	GGNCC	2 cut(s)	142, 392
BmrFI	CCNGG	2 cut(s)	471, 924
BmsI	GCATC	1 cut(s)	622
BpuEI	CTTGAG	1 cut(s)	548
Bsa29I	ATCGAT	1 cut(s)	1033
BsaJI	CCNNGG	1 cut(s)	470
BsaWI	WCCGGW	3 cut(s)	46, 394, 981
Bsc4I	CCNNNNNNNGG	1 cut(s)	401
Bse118I	RCCGGY	1 cut(s)	394
Bse1I	ACTGG	3 cut(s)	187, 285, 688
Bse3DI	GCAATG	1 cut(s)	354
BseAI	TCCGGA	1 cut(s)	46
BseBI	CCWGG	2 cut(s)	471, 924
BseCI	ATCGAT	1 cut(s)	1033
BseDI	CCNNGG	1 cut(s)	470
BseGI	GGATG	2 cut(s)	715, 994
BseLI	CCNNNNNNNGG	1 cut(s)	401
BseMI	GCAATG	1 cut(s)	354
BseNI	ACTGG	3 cut(s)	187, 285, 688
BseRI	GAGGAG	4 cut(s)	26, 35, 267, 659
BsgI	GTGCAG	1 cut(s)	896
BshFI	GGCC	1 cut(s)	469
BshTI	ACCGGT	1 cut(s)	394
BshVI	ATCGAT	1 cut(s)	1033
BsiSI	CCGG	3 cut(s)	47, 395, 982
BslI	CCNNNNNNNGG	1 cut(s)	401
BsmI	GAATGC	2 cut(s)	122, 878
BsnI	GGCC	1 cut(s)	469
Bsp13I	TCCGGA	1 cut(s)	46
Bsp1407I	TGTACA	2 cut(s)	192, 1000
Bsp143I	GATC	6 cut(s)	34, 213, 974, 984, 1030, 1034
BspACI	CCGC	1 cut(s)	75
BspANI	GGCC	1 cut(s)	469
BspDI	ATCGAT	1 cut(s)	1033
BspEI	TCCGGA	1 cut(s)	46
BspMAI	CTGCAG	2 cut(s)	102, 1014
BspMI	ACCTGC	1 cut(s)	248
BspPI	GGATC	4 cut(s)	42, 982, 992, 1029
BsrDI	GCAATG	1 cut(s)	354
BsrFI	RCCGGY	1 cut(s)	394
BsrGI	TGTACA	2 cut(s)	192, 1000
BsrI	ACTGG	3 cut(s)	187, 285, 688
BssAI	RCCGGY	1 cut(s)	394
BssECI	CCNNGG	1 cut(s)	470
BssMI	GATC	6 cut(s)	34, 213, 974, 984, 1030, 1034
BssSI	CACGAG	2 cut(s)	884, 914
Bst2BI	CACGAG	2 cut(s)	884, 914
Bst2UI	CCWGG	2 cut(s)	471, 924
Bst4CI	ACNGT	2 cut(s)	262, 955
Bst6I	CTCTTC	2 cut(s)	837, 842
BstAUI	TGTACA	2 cut(s)	192, 1000
BstC8I	GCNNGC	2 cut(s)	679, 695
BstDEI	CTNAG	2 cut(s)	551, 699
BstF5I	GGATG	2 cut(s)	715, 994
BstKTI	GATC	6 cut(s)	37, 216, 977, 987, 1033, 1037
BstMBI	GATC	6 cut(s)	34, 213, 974, 984, 1030, 1034
BstMWI	GCNNNNNNNGC	8 cut(s)	365, 437, 449, 466, 703, 798, 895, 919
BstNI	CCWGG	2 cut(s)	471, 924
BstSCI	CCNGG	2 cut(s)	469, 922
BstSFI	CTRYAG	2 cut(s)	98, 1010
BstX2I	RGATCY	1 cut(s)	34
BstYI	RGATCY	1 cut(s)	34
Bsu15I	ATCGAT	1 cut(s)	1033
BsuRI	GGCC	1 cut(s)	469
BsuTUI	ATCGAT	1 cut(s)	1033
BtsCI	GGATG	2 cut(s)	715, 994
BtsI	GCAGTG	1 cut(s)	825
BtsIMutI	CAGTG	5 cut(s)	258, 292, 303, 681, 825
BveI	ACCTGC	1 cut(s)	248
Cac8I	GCNNGC	2 cut(s)	679, 695
CaiI	CAGNNNCTG	1 cut(s)	1009
Cfr10I	RCCGGY	1 cut(s)	394
Cfr13I	GGNCC	2 cut(s)	142, 392
ClaI	ATCGAT	1 cut(s)	1033
CseI	GACGC	1 cut(s)	865
Csp6I	GTAC	2 cut(s)	193, 1001
CspAI	ACCGGT	1 cut(s)	394
CviAII	CATG	2 cut(s)	377, 817
CviQI	GTAC	2 cut(s)	193, 1001
DdeI	CTNAG	2 cut(s)	551, 699
DpnI	GATC	6 cut(s)	36, 215, 976, 986, 1032, 1036
DpnII	GATC	6 cut(s)	34, 213, 974, 984, 1030, 1034
Eam1104I	CTCTTC	2 cut(s)	837, 842
EarI	CTCTTC	2 cut(s)	837, 842
Eco47I	GGWCC	2 cut(s)	142, 392
Eco57I	CTGAAG	2 cut(s)	341, 465
EcoRII	CCWGG	2 cut(s)	469, 922
FaeI	CATG	2 cut(s)	380, 820
FalI	AAGNNNNNCTT	2 cut(s)	534, 566
FatI	CATG	2 cut(s)	376, 816
FokI	GGATG	2 cut(s)	722, 981
FspBI	CTAG	3 cut(s)	777, 831, 855
HaeIII	GGCC	1 cut(s)	469
HapII	CCGG	3 cut(s)	47, 395, 982
HgaI	GACGC	1 cut(s)	865
Hin1II	CATG	2 cut(s)	380, 820
HincII	GTYRAC	3 cut(s)	628, 745, 880
HindII	GTYRAC	3 cut(s)	628, 745, 880
HindIII	AAGCTT	1 cut(s)	771
HinfI	GANTC	2 cut(s)	161, 293
HpaII	CCGG	3 cut(s)	47, 395, 982
HphI	GGTGA	4 cut(s)	49, 698, 938, 943
Hpy166II	GTNNAC	8 cut(s)	142, 193, 253, 628, 745, 866, 880, 951
Hpy188I	TCNGA	5 cut(s)	7, 115, 173, 321, 979
Hpy188III	TCNNGA	4 cut(s)	47, 235, 614, 1038
Hpy8I	GTNNAC	8 cut(s)	142, 193, 253, 628, 745, 866, 880, 951
HpyAV	CCTTC	6 cut(s)	19, 241, 302, 399, 536, 683
HpyCH4III	ACNGT	2 cut(s)	262, 955
HpyCH4IV	ACGT	1 cut(s)	189
HpyF10VI	GCNNNNNNNGC	8 cut(s)	365, 437, 449, 466, 703, 798, 895, 919
HpyF3I	CTNAG	2 cut(s)	551, 699
HpySE526I	ACGT	1 cut(s)	189
Hsp92II	CATG	2 cut(s)	380, 820
Kpn2I	TCCGGA	1 cut(s)	46
Kzo9I	GATC	6 cut(s)	34, 213, 974, 984, 1030, 1034
LmnI	GCTCC	2 cut(s)	28, 1006
LweI	GCATC	1 cut(s)	622
MaeI	CTAG	3 cut(s)	777, 831, 855
MaeII	ACGT	1 cut(s)	189
MaeIII	GTNAC	4 cut(s)	55, 397, 490, 926
MalI	GATC	6 cut(s)	36, 215, 976, 986, 1032, 1036
MboI	GATC	6 cut(s)	34, 213, 974, 984, 1030, 1034
MflI	RGATCY	1 cut(s)	34
MluCI	AATT	5 cut(s)	81, 534, 638, 795, 805
MlyI	GAGTC	1 cut(s)	302
MmeI	TCCRAC	1 cut(s)	282
MnlI	CCTC	7 cut(s)	4, 13, 215, 288, 490, 637, 843
MroI	TCCGGA	1 cut(s)	46
MroXI	GAANNNNTTC	1 cut(s)	546
MseI	TTAA	3 cut(s)	87, 455, 599
MslI	CAYNNNNRTG	3 cut(s)	248, 345, 375
MspA1I	CMGCKG	3 cut(s)	77, 103, 428
MspI	CCGG	3 cut(s)	47, 395, 982
MspR9I	CCNGG	2 cut(s)	471, 924
Mva1269I	GAATGC	2 cut(s)	122, 878
MvaI	CCWGG	2 cut(s)	471, 924
MwoI	GCNNNNNNNGC	8 cut(s)	365, 437, 449, 466, 703, 798, 895, 919
NdeII	GATC	6 cut(s)	34, 213, 974, 984, 1030, 1034
NlaIII	CATG	2 cut(s)	380, 820
NmuCI	GTSAC	2 cut(s)	55, 926
PcsI	WCGNNNNNNNCGW	1 cut(s)	222
PctI	GAATGC	2 cut(s)	122, 878
PdmI	GAANNNNTTC	1 cut(s)	546
PfeI	GAWTC	1 cut(s)	161
PinAI	ACCGGT	1 cut(s)	394
PleI	GAGTC	1 cut(s)	301
PpsI	GAGTC	1 cut(s)	301
Psp6I	CCWGG	2 cut(s)	469, 922
PspGI	CCWGG	2 cut(s)	469, 922
PspPI	GGNCC	2 cut(s)	142, 392
PstI	CTGCAG	2 cut(s)	102, 1014
PstNI	CAGNNNCTG	1 cut(s)	1009
PsuI	RGATCY	1 cut(s)	34
PvuII	CAGCTG	2 cut(s)	103, 428
RsaI	GTAC	2 cut(s)	194, 1002
RsaNI	GTAC	2 cut(s)	193, 1001
RseI	CAYNNNNRTG	3 cut(s)	248, 345, 375
SaqAI	TTAA	3 cut(s)	87, 455, 599
Sau3AI	GATC	6 cut(s)	34, 213, 974, 984, 1030, 1034
Sau96I	GGNCC	2 cut(s)	142, 392
SchI	GAGTC	1 cut(s)	302
ScrFI	CCNGG	2 cut(s)	471, 924
SfaNI	GCATC	1 cut(s)	622
SfcI	CTRYAG	2 cut(s)	98, 1010
SinI	GGWCC	2 cut(s)	142, 392
SmiMI	CAYNNNNRTG	3 cut(s)	248, 345, 375
SmlI	CTYRAG	1 cut(s)	563
SmoI	CTYRAG	1 cut(s)	563
Sse9I	AATT	5 cut(s)	81, 534, 638, 795, 805
SsiI	CCGC	1 cut(s)	75
SspMI	CTAG	3 cut(s)	777, 831, 855
StyD4I	CCNGG	2 cut(s)	469, 922
TaaI	ACNGT	2 cut(s)	262, 955
TaiI	ACGT	1 cut(s)	192
TaqI	TCGA	2 cut(s)	216, 1033
TasI	AATT	5 cut(s)	81, 534, 638, 795, 805
TatI	WGTACW	2 cut(s)	192, 1000
TauI	GCSGC	1 cut(s)	77
TfiI	GAWTC	1 cut(s)	161
Tru1I	TTAA	3 cut(s)	87, 455, 599
Tru9I	TTAA	3 cut(s)	87, 455, 599
TscAI	CASTG	5 cut(s)	265, 292, 303, 688, 832
TseFI	GTSAC	2 cut(s)	55, 926
Tsp45I	GTSAC	2 cut(s)	55, 926
TspDTI	ATGAA	4 cut(s)	153, 343, 666, 782
TspRI	CASTG	5 cut(s)	265, 292, 303, 688, 832
VpaK11BI	GGWCC	2 cut(s)	142, 392
XapI	RAATTY	2 cut(s)	638, 805
XmnI	GAANNNNTTC	1 cut(s)	546
XspI	CTAG	3 cut(s)	777, 831, 855

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.