Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0015647

Physical Location & Seq

Genomic Coordinates Reverse (-)

20641770 .. 20643324

Gene Structure 1555 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1266 bp

ATGGGGAGGCACTCTTGTTGCTACAAGCAGAAGCTAAGGAAAGGCCTCTGGTCTCCTGAAGAGGATGAGAAGCTTCTCAATTACATCACCAAGCATGGCCATGGCTGCTGGAGCTCAGTCCCTAAATTAGCAGGTCTGCAGAGGTGTGGGAAGAGCTGCAGGTTAAGGTGGATAAATTACCTGAGGCCTGATTTGAAGAGAGGACCATTCTCACCGCAAGAAGAGAATTTGATAGTAGAACTCCATGCAGTTCTTGGCAACAGATGGTCTCAGATTGCAGCCCAGTTACCAGGAAGAACAGACAACGAGATTAAAAATCTATGGAATTCCTGCATTAAGAAGAAGCTGAGGCAAAGAGGCATTGACCCCAACACTCACAAACTACTCTCAGAAGTGCTTGATCAAAATATTGACACAGAAACTAACAACAATAATAACATTAAGCTCTCCCCAACTTACAAGAGTAATGAGAAGGCCTCTGAGGGATCCAATGAGCTGAGCTTGGTTGAGGCAGTGAGTTCAAAGCACCCACCTTCAGCGTCCGAAAACCGGTTCAACCCTGTTGAAGTTTCCTCCACCTCCAAACTCATCAGCAGCAATGGCGGCAGCAGCAAAAGTTTGACACATGAAGGCTCCATCAGTAGTTGCAGGCCTTGTGATTTTGTGGGGTACTTTTCTTTTCCTCACCAAAATAACCAGAACAATTATGGGTCGTCGTCAGATATGGGGCTGCAGGCAGTAAATCAAAACACCACTTTCAGCTTCCTCAATCAAAATCCAGAGTTCCTGCAACCGTCCATGTCATCAAGCTCCGCCATTTTCACCGCCTCTCCTCCTCCTCCTCCCACACGTGTGAAGCCTTCGATCAGCCTCCCATCTGATAACTCCTCCACCTGGGACTCCAATGCCAACAACAGCAACAGCAGCGGCGGCGGCTATTTCGACAACTCTGCAGCCTTTTCTTGGTGGCCTCTGGAGGCGGTAAAATCCAACGACCCAGAAGAGATCAAATGGTCTGAATATCTCCACAACACCTCATGTCTGATGGGAACCCACCAAGCCTCTCAGCCTGCTAGTTACTCAGAAATGAAACCAGAATCCCAGTCACACATTTTATCAAACAGTTGGAGTGCAACATCTTGGCACCTCCAAAACCACCAGCACCAGCACCAGCACCAGCACCAGCACCAGCAAGCTTTACAAGCTTCGGAGATGTACACAAAGGATCTTCAGAGACTTGCCGTAGCTTTTGGACAAACCCTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

422

Amino Acids

47.07

Weight (kDa)

8.04

Isoelectric Point (pI)

59.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	14 - 61	3e-17	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	17 - 75	8e-13	Myb-like DNA-binding domain
Myb_DNA-binding	PF00249	67 - 110	2.6e-15	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	70 - 120	8e-07	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015647)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g08620
malus_domestica	MD04G1184900.v1.1 MD12G1198600.v1.1
prunus_persica	Prupe.6G303300_v2.0.a1
pyrus_communis	pycom04g16420 pycom12g18500
rosa_chinensis	RchiOBHm_Chr3g0458721
rosa_laevigata	RLG00000025139
rosa_multiflora	Rmu_sc0001634.1_g000020
rosa_roxburghii	Rroxscaffold_6G00420840
rosa_rugosa	Rorug03G0031500
rosa_samantha	Rh3AG089100 Rh3BG091900 Rh3CG092300 Rh3DG093000
rosa_wichuraiana	Rw3G007620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	122, 150
AccB1I	GGYRCC	1 cut(s)	1143
AciI	CCGC	8 cut(s)	215, 603, 813, 825, 927, 930, 933, 980
AclWI	GGATC	3 cut(s)	480, 493, 1233
AcoI	YGGCCR	1 cut(s)	97
AcsI	RAATTY	2 cut(s)	226, 325
AcuI	CTGAAG	3 cut(s)	78, 519, 1214
AcvI	CACGTG	1 cut(s)	851
AfaI	GTAC	2 cut(s)	671, 1217
AfiI	CCNNNNNNNGG	3 cut(s)	549, 894, 963
AflIII	ACRYGT	2 cut(s)	848, 850
AgeI	ACCGGT	1 cut(s)	549
AgsI	TTSAA	4 cut(s)	196, 522, 556, 566
AjnI	CCWGG	2 cut(s)	289, 893
AleI	CACNNNNGTG	1 cut(s)	851
Alw21I	GWGCWC	1 cut(s)	116
Alw26I	GTCTC	3 cut(s)	57, 273, 1228
AlwI	GGATC	3 cut(s)	480, 493, 1233
AoxI	GGCC	6 cut(s)	43, 97, 185, 474, 650, 968
ApeKI	GCWGC	9 cut(s)	105, 156, 278, 594, 606, 609, 730, 924, 953
ApoI	RAATTY	2 cut(s)	226, 325
AsiGI	ACCGGT	1 cut(s)	549
AspS9I	GGNCC	1 cut(s)	203
AsuHPI	GGTGA	4 cut(s)	79, 204, 677, 814
AvaII	GGWCC	1 cut(s)	203
AxyI	CCTNAGG	1 cut(s)	182
BalI	TGGCCA	1 cut(s)	99
BamHI	GGATCC	1 cut(s)	485
BanI	GGYRCC	1 cut(s)	1143
BanII	GRGCYC	1 cut(s)	116
BbrPI	CACGTG	1 cut(s)	851
Bbv12I	GWGCWC	1 cut(s)	116
BbvCI	CCTCAGC	1 cut(s)	347
BbvI	GCAGC	9 cut(s)	92, 143, 290, 606, 618, 621, 717, 936, 965
BccI	CCATC	4 cut(s)	258, 644, 883, 1039
BceAI	ACGGC	1 cut(s)	1226
BcgI	CGANNNNNNTGC	2 cut(s)	932, 966
BciT130I	CCWGG	2 cut(s)	291, 895
BclI	TGATCA	1 cut(s)	400
BcoDI	GTCTC	3 cut(s)	57, 273, 1228
BfaI	CTAG	1 cut(s)	1074
BfmI	CTRYAG	4 cut(s)	137, 157, 731, 951
BfuAI	ACCTGC	2 cut(s)	122, 150
BlpI	GCTNAGC	1 cut(s)	497
Bme1390I	CCNGG	2 cut(s)	291, 895
Bme18I	GGWCC	1 cut(s)	203
BmgT120I	GGNCC	1 cut(s)	203
BmiI	GGNNCC	4 cut(s)	487, 634, 1051, 1145
BmrFI	CCNGG	2 cut(s)	291, 895
BmrI	ACTGGG	2 cut(s)	277, 1096
BmuI	ACTGGG	2 cut(s)	277, 1096
BplI	GAGNNNNNCTC	2 cut(s)	461, 493
BpmI	CTGGAG	2 cut(s)	130, 995
Bpu10I	CCTNAGC	2 cut(s)	35, 347
Bpu1102I	GCTNAGC	1 cut(s)	497
BsaAI	YACGTR	1 cut(s)	851
BsaI	GGTCTC	2 cut(s)	57, 273
BsaJI	CCNNGG	2 cut(s)	100, 894
BsaWI	WCCGGW	1 cut(s)	549
BsaXI	ACNNNNNCTCC	2 cut(s)	814, 844
Bsc4I	CCNNNNNNNGG	3 cut(s)	549, 894, 963
Bse118I	RCCGGY	1 cut(s)	549
Bse1I	ACTGG	2 cut(s)	283, 1102
Bse21I	CCTNAGG	1 cut(s)	182
Bse3DI	GCAATG	1 cut(s)	604
BseBI	CCWGG	2 cut(s)	291, 895
BseDI	CCNNGG	2 cut(s)	100, 894
BseGI	GGATG	1 cut(s)	70
BseLI	CCNNNNNNNGG	3 cut(s)	549, 894, 963
BseMI	GCAATG	1 cut(s)	604
BseMII	CTCAG	9 cut(s)	129, 173, 284, 338, 402, 471, 488, 1079, 1095
BseNI	ACTGG	2 cut(s)	283, 1102
BseRI	GAGGAG	5 cut(s)	822, 825, 828, 831, 877
BseXI	GCAGC	9 cut(s)	92, 143, 290, 606, 618, 621, 717, 936, 965
BshFI	GGCC	6 cut(s)	45, 99, 187, 476, 652, 970
BshNI	GGYRCC	1 cut(s)	1143
BshTI	ACCGGT	1 cut(s)	549
BsiHKAI	GWGCWC	1 cut(s)	116
BsiSI	CCGG	1 cut(s)	550
BslFI	GGGAC	2 cut(s)	104, 911
BslI	CCNNNNNNNGG	3 cut(s)	549, 894, 963
BsmAI	GTCTC	3 cut(s)	57, 273, 1228
BsmFI	GGGAC	2 cut(s)	104, 911
BsnI	GGCC	6 cut(s)	45, 99, 187, 476, 652, 970
Bso31I	GGTCTC	2 cut(s)	57, 273
Bsp1286I	GDGCHC	1 cut(s)	116
Bsp1407I	TGTACA	1 cut(s)	1215
Bsp143I	GATC	5 cut(s)	400, 485, 864, 1005, 1225
Bsp1720I	GCTNAGC	1 cut(s)	497
Bsp19I	CCATGG	1 cut(s)	100
BspACI	CCGC	8 cut(s)	215, 603, 813, 825, 927, 930, 933, 980
BspANI	GGCC	6 cut(s)	45, 99, 187, 476, 652, 970
BspCNI	CTCAG	9 cut(s)	128, 174, 283, 339, 401, 472, 489, 1078, 1094
BspLI	GGNNCC	4 cut(s)	487, 634, 1051, 1145
BspMAI	CTGCAG	4 cut(s)	141, 161, 735, 955
BspMI	ACCTGC	2 cut(s)	122, 150
BspPI	GGATC	3 cut(s)	480, 493, 1233
BspQI	GCTCTTC	1 cut(s)	146
BspT107I	GGYRCC	1 cut(s)	1143
BspTNI	GGTCTC	2 cut(s)	57, 273
BsrDI	GCAATG	1 cut(s)	604
BsrFI	RCCGGY	1 cut(s)	549
BsrGI	TGTACA	1 cut(s)	1215
BsrI	ACTGG	2 cut(s)	283, 1102
BssAI	RCCGGY	1 cut(s)	549
BssECI	CCNNGG	2 cut(s)	100, 894
BssMI	GATC	5 cut(s)	400, 485, 864, 1005, 1225
BssT1I	CCWWGG	1 cut(s)	100
Bst2UI	CCWGG	2 cut(s)	291, 895
Bst4CI	ACNGT	2 cut(s)	795, 1124
Bst6I	CTCTTC	5 cut(s)	54, 146, 191, 216, 996
BstAUI	TGTACA	1 cut(s)	1215
BstBAI	YACGTR	1 cut(s)	851
BstC8I	GCNNGC	4 cut(s)	650, 735, 1071, 1194
BstDSI	CCRYGG	1 cut(s)	100
BstF5I	GGATG	1 cut(s)	70
BstKTI	GATC	5 cut(s)	403, 488, 867, 1008, 1228
BstMAI	GTCTC	3 cut(s)	57, 273, 1228
BstMBI	GATC	5 cut(s)	400, 485, 864, 1005, 1225
BstMWI	GCNNNNNNNGC	9 cut(s)	105, 111, 600, 603, 609, 924, 930, 933, 1202
BstNI	CCWGG	2 cut(s)	291, 895
BstSCI	CCNGG	2 cut(s)	289, 893
BstSFI	CTRYAG	4 cut(s)	137, 157, 731, 951
BstV1I	GCAGC	9 cut(s)	92, 143, 290, 606, 618, 621, 717, 936, 965
BstX2I	RGATCY	2 cut(s)	485, 1225
BstYI	RGATCY	2 cut(s)	485, 1225
Bsu36I	CCTNAGG	1 cut(s)	182
BsuRI	GGCC	6 cut(s)	45, 99, 187, 476, 652, 970
BtgI	CCRYGG	1 cut(s)	100
BtsCI	GGATG	1 cut(s)	70
BtsI	GCAGTG	1 cut(s)	519
BtsIMutI	CAGTG	1 cut(s)	519
BveI	ACCTGC	2 cut(s)	122, 150
Cac8I	GCNNGC	4 cut(s)	650, 735, 1071, 1194
Cfr10I	RCCGGY	1 cut(s)	549
Cfr13I	GGNCC	1 cut(s)	203
CseI	GACGC	1 cut(s)	528
Csp6I	GTAC	2 cut(s)	670, 1216
CspAI	ACCGGT	1 cut(s)	549
CviAII	CATG	6 cut(s)	95, 101, 245, 626, 799, 1038
CviQI	GTAC	2 cut(s)	670, 1216
DpnI	GATC	5 cut(s)	402, 487, 866, 1007, 1227
DpnII	GATC	5 cut(s)	400, 485, 864, 1005, 1225
EaeI	YGGCCR	1 cut(s)	97
Eam1104I	CTCTTC	5 cut(s)	54, 146, 191, 216, 996
EarI	CTCTTC	5 cut(s)	54, 146, 191, 216, 996
EciI	GGCGGA	1 cut(s)	802
Ecl136II	GAGCTC	1 cut(s)	114
Eco130I	CCWWGG	1 cut(s)	100
Eco147I	AGGCCT	4 cut(s)	45, 187, 476, 652
Eco24I	GRGCYC	1 cut(s)	116
Eco31I	GGTCTC	2 cut(s)	57, 273
Eco47I	GGWCC	1 cut(s)	203
Eco53kI	GAGCTC	1 cut(s)	114
Eco57I	CTGAAG	3 cut(s)	78, 519, 1214
Eco72I	CACGTG	1 cut(s)	851
Eco81I	CCTNAGG	1 cut(s)	182
EcoICRI	GAGCTC	1 cut(s)	114
EcoRI	GAATTC	1 cut(s)	325
EcoRII	CCWGG	2 cut(s)	289, 893
EcoT14I	CCWWGG	1 cut(s)	100
EcoT38I	GRGCYC	1 cut(s)	116
ErhI	CCWWGG	1 cut(s)	100
FaeI	CATG	6 cut(s)	98, 104, 248, 629, 802, 1041
FaiI	YATR	9 cut(s)	96, 102, 246, 322, 627, 708, 725, 800, 1039
FaqI	GGGAC	2 cut(s)	104, 911
FatI	CATG	6 cut(s)	94, 100, 244, 625, 798, 1037
FbaI	TGATCA	1 cut(s)	400
FokI	GGATG	1 cut(s)	77
FriOI	GRGCYC	1 cut(s)	116
FspBI	CTAG	1 cut(s)	1074
GsuI	CTGGAG	2 cut(s)	130, 995
HaeIII	GGCC	6 cut(s)	45, 99, 187, 476, 652, 970
HapII	CCGG	1 cut(s)	550
HgaI	GACGC	1 cut(s)	528
Hin1II	CATG	6 cut(s)	98, 104, 248, 629, 802, 1041
HindIII	AAGCTT	3 cut(s)	71, 1194, 1203
HinfI	GANTC	2 cut(s)	899, 1097
HpaII	CCGG	1 cut(s)	550
HphI	GGTGA	4 cut(s)	79, 204, 677, 814
Hpy166II	GTNNAC	1 cut(s)	1218
Hpy188III	TCNNGA	3 cut(s)	56, 779, 974
Hpy8I	GTNNAC	1 cut(s)	1218
Hpy99I	CGWCG	1 cut(s)	718
HpyAV	CCTTC	4 cut(s)	466, 543, 623, 870
HpyCH4III	ACNGT	2 cut(s)	795, 1124
HpyCH4IV	ACGT	1 cut(s)	850
HpyF10VI	GCNNNNNNNGC	9 cut(s)	105, 111, 600, 603, 609, 924, 930, 933, 1202
HpySE526I	ACGT	1 cut(s)	850
Hsp92II	CATG	6 cut(s)	98, 104, 248, 629, 802, 1041
Ksp22I	TGATCA	1 cut(s)	400
Kzo9I	GATC	5 cut(s)	400, 485, 864, 1005, 1225
LguI	GCTCTTC	1 cut(s)	146
LmnI	GCTCC	3 cut(s)	111, 638, 815
Lsp1109I	GCAGC	9 cut(s)	92, 143, 290, 606, 618, 621, 717, 936, 965
MaeI	CTAG	1 cut(s)	1074
MaeII	ACGT	1 cut(s)	850
MaeIII	GTNAC	3 cut(s)	285, 1076, 1104
MalI	GATC	5 cut(s)	402, 487, 866, 1007, 1227
MboI	GATC	5 cut(s)	400, 485, 864, 1005, 1225
MboII	GAAGA	8 cut(s)	71, 163, 208, 233, 306, 352, 1013, 1220
MflI	RGATCY	2 cut(s)	485, 1225
MhlI	GDGCHC	1 cut(s)	116
MlsI	TGGCCA	1 cut(s)	99
MluCI	AATT	6 cut(s)	79, 125, 175, 226, 325, 703
MluNI	TGGCCA	1 cut(s)	99
MlyI	GAGTC	1 cut(s)	893
MmeI	TCCRAC	2 cut(s)	1014, 1106
Mox20I	TGGCCA	1 cut(s)	99
MscI	TGGCCA	1 cut(s)	99
MseI	TTAA	4 cut(s)	164, 312, 336, 441
MslI	CAYNNNNRTG	2 cut(s)	99, 851
Msp20I	TGGCCA	1 cut(s)	99
MspA1I	CMGCKG	1 cut(s)	927
MspI	CCGG	1 cut(s)	550
MspR9I	CCNGG	2 cut(s)	291, 895
MvaI	CCWGG	2 cut(s)	291, 895
MwoI	GCNNNNNNNGC	9 cut(s)	105, 111, 600, 603, 609, 924, 930, 933, 1202
NcoI	CCATGG	1 cut(s)	100
NdeII	GATC	5 cut(s)	400, 485, 864, 1005, 1225
NlaIII	CATG	6 cut(s)	98, 104, 248, 629, 802, 1041
NlaIV	GGNNCC	4 cut(s)	487, 634, 1051, 1145
NmuCI	GTSAC	1 cut(s)	1104
OliI	CACNNNNGTG	1 cut(s)	851
PceI	AGGCCT	4 cut(s)	45, 187, 476, 652
PciSI	GCTCTTC	1 cut(s)	146
PfeI	GAWTC	1 cut(s)	1097
PinAI	ACCGGT	1 cut(s)	549
PleI	GAGTC	1 cut(s)	893
PmaCI	CACGTG	1 cut(s)	851
PmlI	CACGTG	1 cut(s)	851
PpsI	GAGTC	1 cut(s)	893
Ppu21I	YACGTR	1 cut(s)	851
Psp124BI	GAGCTC	1 cut(s)	116
Psp6I	CCWGG	2 cut(s)	289, 893
PspCI	CACGTG	1 cut(s)	851
PspGI	CCWGG	2 cut(s)	289, 893
PspN4I	GGNNCC	4 cut(s)	487, 634, 1051, 1145
PspPI	GGNCC	1 cut(s)	203
PstI	CTGCAG	4 cut(s)	141, 161, 735, 955
PsuI	RGATCY	2 cut(s)	485, 1225
RsaI	GTAC	2 cut(s)	671, 1217
RsaNI	GTAC	2 cut(s)	670, 1216
RseI	CAYNNNNRTG	2 cut(s)	99, 851
SacI	GAGCTC	1 cut(s)	116
SapI	GCTCTTC	1 cut(s)	146
SaqAI	TTAA	4 cut(s)	164, 312, 336, 441
Sau3AI	GATC	5 cut(s)	400, 485, 864, 1005, 1225
Sau96I	GGNCC	1 cut(s)	203
SchI	GAGTC	1 cut(s)	893
ScrFI	CCNGG	2 cut(s)	291, 895
SduI	GDGCHC	1 cut(s)	116
SfcI	CTRYAG	4 cut(s)	137, 157, 731, 951
SinI	GGWCC	1 cut(s)	203
SmiMI	CAYNNNNRTG	2 cut(s)	99, 851
Sse9I	AATT	6 cut(s)	79, 125, 175, 226, 325, 703
SseBI	AGGCCT	4 cut(s)	45, 187, 476, 652
SsiI	CCGC	8 cut(s)	215, 603, 813, 825, 927, 930, 933, 980
SspI	AATATT	1 cut(s)	409
SspMI	CTAG	1 cut(s)	1074
SstI	GAGCTC	1 cut(s)	116
StuI	AGGCCT	4 cut(s)	45, 187, 476, 652
StyD4I	CCNGG	2 cut(s)	289, 893
StyI	CCWWGG	1 cut(s)	100
TaaI	ACNGT	2 cut(s)	795, 1124
TaiI	ACGT	1 cut(s)	853
TaqI	TCGA	2 cut(s)	863, 942
TasI	AATT	6 cut(s)	79, 125, 175, 226, 325, 703
TatI	WGTACW	1 cut(s)	1215
TauI	GCSGC	4 cut(s)	606, 930, 933, 936
TfiI	GAWTC	1 cut(s)	1097
Tru1I	TTAA	4 cut(s)	164, 312, 336, 441
Tru9I	TTAA	4 cut(s)	164, 312, 336, 441
TscAI	CASTG	1 cut(s)	519
TseFI	GTSAC	1 cut(s)	1104
TseI	GCWGC	9 cut(s)	105, 156, 278, 594, 606, 609, 730, 924, 953
Tsp45I	GTSAC	1 cut(s)	1104
TspDTI	ATGAA	2 cut(s)	642, 1103
TspRI	CASTG	1 cut(s)	519
VpaK11BI	GGWCC	1 cut(s)	203
XapI	RAATTY	2 cut(s)	226, 325
XcmI	CCANNNNNNNNNTGG	2 cut(s)	251, 704
XspI	CTAG	1 cut(s)	1074

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.