pycom12g19190

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr12
OG0013695
Physical Location & Seq
Reverse (-)
21110673 .. 21111903
1231 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 558 bp
ATGGATGAACTAGGTTCTCGAGAAAGTGATCTGGATTTTGACTTGGAAAGTGGTGACACGGAAAGCTCCGATGAAGAAGAAGTACATGAAGAGTCAAGTTCAGATGGTAAACGTCCCAGGAAAACAATGGCTAGGGCAAGAAGTGGATACTTGTATGTTGATGGATCAATAGCAGCTAGTGATGAGCTAAGCACAAGCAAGAATGTTTCGAGTATTGGTGAGAATATGGATATGTTAGCTAGTAGCATGGGGAAAATGGCAGAAGGAGGAATGGAGAATAGAATGGGAGATAAACAGAAAAAGAAGATCCCTAAGAAGCATCCCAAGCCACCTCGGCCTCCTACAGGGCCATCATTACATGCAGCTGATATAGAATTGGTCAACGAAATTTCAAAGCGTGCGAGGTTGCGGCGTGCAAGGAGAGAAAGAATGAATGCATTGAAGAGAATGAAAGCTGATAAAACCTCGTCGTCAAAGATCAACTTTTTGGCAATGGTCGTAACCGCTATCTTCTTCCTTGTGATAATCTTTCAAGGAATCTTGGGTTCTCGTGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

186

Amino Acids

20.48

Weight (kDa)

9.09

Isoelectric Point (pI)

49.32

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013695)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g07660 FvH4_6g07660
malus_domestica MD12G1204500.v1.1
prunus_persica Prupe.6G311200_v2.0.a1 Prupe.6G311200_v2.0.a1 Prupe.6G311200_v2.0.a1
pyrus_communis pycom12g19190
rosa_chinensis RchiOBHm_Chr3g0457351
rosa_laevigata RLG00000025233
rosa_multiflora Rmu_sc0005442.1_g000009
rosa_roxburghii Rroxscaffold_6G00421960
rosa_rugosa Rorug03G0019900 Rorug03G0020000
rosa_samantha Rh3AG080200 Rh3BG082000 Rh3CG082300 Rh3DG083700
rosa_wichuraiana Rw3G006900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 409, 504
AclWI GGATC 2 cut(s) 172, 301
AcsI RAATTY 1 cut(s) 387
AfaI GTAC 1 cut(s) 84
AfiI CCNNNNNNNGG 1 cut(s) 344
AgsI TTSAA 3 cut(s) 393, 442, 533
AjnI CCWGG 1 cut(s) 116
AluBI AGCT 6 cut(s) 66, 176, 187, 239, 365, 455
AluI AGCT 6 cut(s) 66, 176, 187, 239, 365, 455
AlwI GGATC 2 cut(s) 172, 301
Ama87I CYCGRG 1 cut(s) 18
AoxI GGCC 2 cut(s) 335, 347
ApeKI GCWGC 2 cut(s) 173, 362
ApoI RAATTY 1 cut(s) 387
AspS9I GGNCC 1 cut(s) 347
AsuHPI GGTGA 2 cut(s) 65, 230
AvaI CYCGRG 1 cut(s) 18
BarI GAAGNNNNNNTAC 2 cut(s) 66, 98
BauI CACGAG 1 cut(s) 549
BbvI GCAGC 2 cut(s) 185, 374
BccI CCATC 3 cut(s) 98, 155, 358
BciT130I CCWGG 1 cut(s) 118
BciVI GTATCC 1 cut(s) 140
BfaI CTAG 4 cut(s) 11, 132, 177, 240
BfmI CTRYAG 1 cut(s) 342
BfuI GTATCC 1 cut(s) 140
BglI GCCNNNNNGGC 1 cut(s) 334
BisI GCNGC 3 cut(s) 174, 363, 410
BlpI GCTNAGC 1 cut(s) 188
BlsI GCNGC 3 cut(s) 175, 364, 411
Bme1390I CCNGG 1 cut(s) 118
BmeT110I CYCGRG 1 cut(s) 18
BmgT120I GGNCC 1 cut(s) 347
BmrFI CCNGG 1 cut(s) 118
BmsI GCATC 1 cut(s) 328
Bpu1102I GCTNAGC 1 cut(s) 188
BsaJI CCNNGG 2 cut(s) 116, 332
Bsc4I CCNNNNNNNGG 1 cut(s) 344
Bse3DI GCAATG 1 cut(s) 498
BseBI CCWGG 1 cut(s) 118
BseDI CCNNGG 2 cut(s) 116, 332
BseGI GGATG 2 cut(s) 10, 319
BseLI CCNNNNNNNGG 1 cut(s) 344
BseMI GCAATG 1 cut(s) 498
BseXI GCAGC 2 cut(s) 185, 374
BshFI GGCC 2 cut(s) 337, 349
BsiHKCI CYCGRG 1 cut(s) 18
BslFI GGGAC 1 cut(s) 99
BslI CCNNNNNNNGG 1 cut(s) 344
BsmFI GGGAC 1 cut(s) 99
BsmI GAATGC 1 cut(s) 439
BsnI GGCC 2 cut(s) 337, 349
BsoBI CYCGRG 1 cut(s) 18
Bsp143I GATC 4 cut(s) 28, 164, 306, 477
Bsp1720I GCTNAGC 1 cut(s) 188
BspACI CCGC 2 cut(s) 409, 504
BspANI GGCC 2 cut(s) 337, 349
BspPI GGATC 2 cut(s) 172, 301
BsrDI GCAATG 1 cut(s) 498
BssECI CCNNGG 2 cut(s) 116, 332
BssMI GATC 4 cut(s) 28, 164, 306, 477
BssSI CACGAG 1 cut(s) 549
Bst2BI CACGAG 1 cut(s) 549
Bst2UI CCWGG 1 cut(s) 118
Bst6I CTCTTC 2 cut(s) 84, 437
BstC8I GCNNGC 2 cut(s) 399, 414
BstDEI CTNAG 2 cut(s) 188, 312
BstENI CCTNNNNNAGG 1 cut(s) 342
BstF5I GGATG 2 cut(s) 10, 319
BstKTI GATC 4 cut(s) 31, 167, 309, 480
BstMBI GATC 4 cut(s) 28, 164, 306, 477
BstMWI GCNNNNNNNGC 2 cut(s) 325, 334
BstNI CCWGG 1 cut(s) 118
BstNSI RCATGY 1 cut(s) 362
BstSCI CCNGG 1 cut(s) 116
BstSFI CTRYAG 1 cut(s) 342
BstV1I GCAGC 2 cut(s) 185, 374
BstX2I RGATCY 1 cut(s) 306
BstYI RGATCY 1 cut(s) 306
BsuI GTATCC 1 cut(s) 140
BsuRI GGCC 2 cut(s) 337, 349
BtsCI GGATG 2 cut(s) 10, 319
Cac8I GCNNGC 2 cut(s) 399, 414
Cfr13I GGNCC 1 cut(s) 347
Csp6I GTAC 1 cut(s) 83
CviAII CATG 4 cut(s) 86, 247, 359, 555
CviQI GTAC 1 cut(s) 83
DdeI CTNAG 2 cut(s) 188, 312
DpnI GATC 4 cut(s) 30, 166, 308, 479
DpnII GATC 4 cut(s) 28, 164, 306, 477
Eam1104I CTCTTC 2 cut(s) 84, 437
EarI CTCTTC 2 cut(s) 84, 437
Eco88I CYCGRG 1 cut(s) 18
EcoNI CCTNNNNNAGG 1 cut(s) 342
EcoRII CCWGG 1 cut(s) 116
EcoT22I ATGCAT 1 cut(s) 439
FaeI CATG 4 cut(s) 89, 250, 362, 558
FaiI YATR 8 cut(s) 87, 156, 227, 233, 248, 360, 371, 556
FalI AAGNNNNNCTT 2 cut(s) 467, 499
FaqI GGGAC 1 cut(s) 99
FatI CATG 4 cut(s) 85, 246, 358, 554
Fnu4HI GCNGC 3 cut(s) 174, 363, 410
FokI GGATG 2 cut(s) 17, 306
Fsp4HI GCNGC 3 cut(s) 174, 363, 410
FspBI CTAG 4 cut(s) 11, 132, 177, 240
GluI GCNGC 3 cut(s) 174, 363, 410
HaeIII GGCC 2 cut(s) 337, 349
Hin1II CATG 4 cut(s) 89, 250, 362, 558
HincII GTYRAC 1 cut(s) 382
HindII GTYRAC 1 cut(s) 382
HinfI GANTC 2 cut(s) 92, 537
HphI GGTGA 2 cut(s) 65, 230
Hpy166II GTNNAC 2 cut(s) 110, 382
Hpy188I TCNGA 2 cut(s) 70, 103
Hpy188III TCNNGA 3 cut(s) 18, 20, 32
Hpy8I GTNNAC 2 cut(s) 110, 382
Hpy99I CGWCG 1 cut(s) 472
HpyAV CCTTC 1 cut(s) 257
HpyCH4IV ACGT 1 cut(s) 112
HpyCH4V TGCA 4 cut(s) 362, 416, 437, 554
HpyF10VI GCNNNNNNNGC 2 cut(s) 325, 334
HpyF3I CTNAG 2 cut(s) 188, 312
HpySE526I ACGT 1 cut(s) 112
Hsp92II CATG 4 cut(s) 89, 250, 362, 558
Kzo9I GATC 4 cut(s) 28, 164, 306, 477
LmnI GCTCC 1 cut(s) 71
LpnPI CCDG 4 cut(s) 17, 103, 130, 330
Lsp1109I GCAGC 2 cut(s) 185, 374
LweI GCATC 1 cut(s) 328
MaeI CTAG 4 cut(s) 11, 132, 177, 240
MaeII ACGT 1 cut(s) 112
MaeIII GTNAC 2 cut(s) 53, 499
MalI GATC 4 cut(s) 30, 166, 308, 479
MboI GATC 4 cut(s) 28, 164, 306, 477
MboII GAAGA 7 cut(s) 86, 89, 101, 316, 454, 502, 505
MflI RGATCY 1 cut(s) 306
MluCI AATT 2 cut(s) 374, 387
MlyI GAGTC 1 cut(s) 101
MnlI CCTC 5 cut(s) 260, 342, 348, 396, 475
Mph1103I ATGCAT 1 cut(s) 439
MspA1I CMGCKG 1 cut(s) 365
MspR9I CCNGG 1 cut(s) 118
Mva1269I GAATGC 1 cut(s) 439
MvaI CCWGG 1 cut(s) 118
MwoI GCNNNNNNNGC 2 cut(s) 325, 334
NdeII GATC 4 cut(s) 28, 164, 306, 477
NlaIII CATG 4 cut(s) 89, 250, 362, 558
NmeAIII GCCGAG 1 cut(s) 313
NmuCI GTSAC 1 cut(s) 53
NsiI ATGCAT 1 cut(s) 439
NspI RCATGY 1 cut(s) 362
PaeR7I CTCGAG 1 cut(s) 18
PctI GAATGC 1 cut(s) 439
PfeI GAWTC 1 cut(s) 537
PkrI GCNGC 3 cut(s) 175, 364, 411
PleI GAGTC 1 cut(s) 100
PpsI GAGTC 1 cut(s) 100
Psp6I CCWGG 1 cut(s) 116
PspGI CCWGG 1 cut(s) 116
PspPI GGNCC 1 cut(s) 347
PsuI RGATCY 1 cut(s) 306
PvuII CAGCTG 1 cut(s) 365
RsaI GTAC 1 cut(s) 84
RsaNI GTAC 1 cut(s) 83
SatI GCNGC 3 cut(s) 174, 363, 410
Sau3AI GATC 4 cut(s) 28, 164, 306, 477
Sau96I GGNCC 1 cut(s) 347
SchI GAGTC 1 cut(s) 101
ScrFI CCNGG 1 cut(s) 118
SfaNI GCATC 1 cut(s) 328
SfcI CTRYAG 1 cut(s) 342
Sfr274I CTCGAG 1 cut(s) 18
SlaI CTCGAG 1 cut(s) 18
SmlI CTYRAG 1 cut(s) 18
SmoI CTYRAG 1 cut(s) 18
Sse9I AATT 2 cut(s) 374, 387
SsiI CCGC 2 cut(s) 409, 504
SspMI CTAG 4 cut(s) 11, 132, 177, 240
StyD4I CCNGG 1 cut(s) 116
TaiI ACGT 1 cut(s) 115
TaqI TCGA 2 cut(s) 19, 209
TasI AATT 2 cut(s) 374, 387
TatI WGTACW 1 cut(s) 82
TauI GCSGC 1 cut(s) 412
TfiI GAWTC 1 cut(s) 537
TseFI GTSAC 1 cut(s) 53
TseI GCWGC 2 cut(s) 173, 362
Tsp45I GTSAC 1 cut(s) 53
TspDTI ATGAA 5 cut(s) 21, 87, 102, 446, 464
TspGWI ACGGA 1 cut(s) 74
XagI CCTNNNNNAGG 1 cut(s) 342
XapI RAATTY 1 cut(s) 387
XceI RCATGY 1 cut(s) 362
XcmI CCANNNNNNNNNTGG 1 cut(s) 124
XhoI CTCGAG 1 cut(s) 18
XspI CTAG 4 cut(s) 11, 132, 177, 240
Zsp2I ATGCAT 1 cut(s) 439
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.