pycom12g21390

Trafficking protein particle complex subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr12
OG0010961
Physical Location & Seq
Reverse (-)
22553545 .. 22555956
2412 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 639 bp
ATGGTCGCCCAATGGGCCAATTATCACATACCCACATGCCCATATTTCTATAAGAAAGAAAAATCAGAGAAAATAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGATGGGGAGGGAGGTCTCAGAGAGCTGCGTGGATAGTCTACTAACAGAGATGGTCTCTATGTACTGCAATCGGTTATACGCCAACAAGCCCGAGCTCGCCGCCAGTAGGATCGACGCTATTGGCTACCAGGTTGGCCACCAGCTCTCCGAGCGGTATACGATGGAGCGGCCTCGGTTTACTGATCATCTGGATGCAATTAAGTTCATCTGCAAGGACTTCTGGTCCGAGCTCTTCAAGAAGCAGATTGACAACTTAAAGACAAATCATAGAGGTACTTTTGTATTGCAAGATAATCGATTTCGTTGGGTTTCACGCATGTCACTTGATCCTTCCGAGAATGGAGACTTGTCTCAAGAAAATGCTGAGGCGGCTGAAAACAAGGCAGCACAAGAACCAAACATGCATCTCCATTTCTCGTGTGGAGTCATAAAAGGGGCTCTTCATAACTTGGGGATTGCTTGTGCCGTTTCTGCTGACCCTTCCCACCTTCCTGCGTGTTCATTCGTGGTTCGTATAAAGCCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TRAPP

Protein Analysis

213

Amino Acids

24.57

Weight (kDa)

6.71

Isoelectric Point (pI)

46.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TRAPP PF04051 49 - 211 2e-40 Transport protein particle (TRAPP) component
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010961)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G05000
fragaria_vesca FvH4_6g04260
malus_domestica MD00G1052700.v1.1 MD12G1229300.v1.1 MD12G1230100.v1.1
prunus_persica Prupe.6G334800_v2.0.a1
pyrus_communis pycom04g18990 pycom12g21390
rosa_chinensis RchiOBHm_Chr3g0452951 RchiOBHm_Chr5g0055691
rosa_laevigata RLG00000025559
rosa_multiflora Rmu_sc0005888.1_g000018
rosa_roxburghii Rroxscaffold_6G00429950
rosa_rugosa Rorug02G0643800 Rorug05G0294600
rosa_samantha Rh3AG046800 Rh3BG049200 Rh3CG047900 Rh3DG048800
rosa_wichuraiana Rw3G003670

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 2 cut(s) 265, 280
AccI GTMKAC 2 cut(s) 151, 269
AciI CCGC 4 cut(s) 213, 265, 280, 482
AclWI GGATC 2 cut(s) 230, 434
AcoI YGGCCR 1 cut(s) 247
AfaI GTAC 2 cut(s) 176, 388
AfiI CCNNNNNNNGG 1 cut(s) 219
AgsI TTSAA 1 cut(s) 349
AhdI GACNNNNNGTC 1 cut(s) 334
AjnI CCWGG 1 cut(s) 240
AluBI AGCT 4 cut(s) 138, 208, 256, 343
AluI AGCT 4 cut(s) 138, 208, 256, 343
Alw21I GWGCWC 2 cut(s) 210, 345
Alw26I GTCTC 4 cut(s) 133, 172, 450, 468
AlwI GGATC 2 cut(s) 230, 434
Ama87I CYCGRG 1 cut(s) 203
AoxI GGCC 3 cut(s) 15, 247, 281
ApeKI GCWGC 2 cut(s) 138, 497
AspS9I GGNCC 2 cut(s) 15, 336
AvaI CYCGRG 1 cut(s) 203
AvaII GGWCC 1 cut(s) 336
BaeI ACNNNNGTAYC 2 cut(s) 378, 411
BalI TGGCCA 1 cut(s) 249
BanII GRGCYC 3 cut(s) 210, 345, 553
BauI CACGAG 1 cut(s) 529
Bbv12I GWGCWC 2 cut(s) 210, 345
BbvCI CCTCAGC 1 cut(s) 477
BbvI GCAGC 2 cut(s) 125, 509
BccI CCATC 3 cut(s) 109, 157, 268
BceAI ACGGC 1 cut(s) 563
BcgI CGANNNNNNTGC 2 cut(s) 389, 423
BciT130I CCWGG 1 cut(s) 242
BclI TGATCA 1 cut(s) 295
BcoDI GTCTC 4 cut(s) 133, 172, 450, 468
BglI GCCNNNNNGGC 1 cut(s) 14
BisI GCNGC 5 cut(s) 139, 213, 281, 483, 498
BlsI GCNGC 5 cut(s) 140, 214, 282, 484, 499
Bme1390I CCNGG 1 cut(s) 242
Bme18I GGWCC 1 cut(s) 336
BmeRI GACNNNNNGTC 1 cut(s) 334
BmeT110I CYCGRG 1 cut(s) 203
BmgT120I GGNCC 2 cut(s) 15, 336
BmrFI CCNGG 1 cut(s) 242
BmsI GCATC 2 cut(s) 295, 526
BplI GAGNNNNNCTC 2 cut(s) 152, 184
Bpu10I CCTNAGC 1 cut(s) 477
BpuEI CTTGAG 1 cut(s) 450
Bsa29I ATCGAT 1 cut(s) 409
BsaI GGTCTC 2 cut(s) 133, 172
BsaJI CCNNGG 1 cut(s) 284
BsaXI ACNNNNNCTCC 2 cut(s) 242, 272
Bsc4I CCNNNNNNNGG 1 cut(s) 219
Bse1I ACTGG 1 cut(s) 216
BseBI CCWGG 1 cut(s) 242
BseCI ATCGAT 1 cut(s) 409
BseDI CCNNGG 1 cut(s) 284
BseGI GGATG 1 cut(s) 310
BseLI CCNNNNNNNGG 1 cut(s) 219
BseMII CTCAG 2 cut(s) 144, 468
BseNI ACTGG 1 cut(s) 216
BseXI GCAGC 2 cut(s) 125, 509
BshFI GGCC 3 cut(s) 17, 249, 283
BshVI ATCGAT 1 cut(s) 409
BsiHKAI GWGCWC 2 cut(s) 210, 345
BsiHKCI CYCGRG 1 cut(s) 203
BslI CCNNNNNNNGG 1 cut(s) 219
BsmAI GTCTC 4 cut(s) 133, 172, 450, 468
BsnI GGCC 3 cut(s) 17, 249, 283
Bso31I GGTCTC 2 cut(s) 133, 172
BsoBI CYCGRG 1 cut(s) 203
Bsp1286I GDGCHC 3 cut(s) 210, 345, 553
Bsp143I GATC 3 cut(s) 222, 295, 439
BspACI CCGC 4 cut(s) 213, 265, 280, 482
BspANI GGCC 3 cut(s) 17, 249, 283
BspCNI CTCAG 2 cut(s) 143, 469
BspDI ATCGAT 1 cut(s) 409
BspPI GGATC 2 cut(s) 230, 434
BspQI GCTCTTC 2 cut(s) 350, 558
BspTNI GGTCTC 2 cut(s) 133, 172
BsrBI CCGCTC 2 cut(s) 265, 280
BsrI ACTGG 1 cut(s) 216
BssECI CCNNGG 1 cut(s) 284
BssMI GATC 3 cut(s) 222, 295, 439
BssNAI GTATAC 1 cut(s) 270
BssSI CACGAG 1 cut(s) 529
Bst1107I GTATAC 1 cut(s) 270
Bst2BI CACGAG 1 cut(s) 529
Bst2UI CCWGG 1 cut(s) 242
Bst6I CTCTTC 2 cut(s) 350, 558
BstC8I GCNNGC 1 cut(s) 210
BstDEI CTNAG 2 cut(s) 130, 477
BstF5I GGATG 1 cut(s) 310
BstKTI GATC 3 cut(s) 225, 298, 442
BstMAI GTCTC 4 cut(s) 133, 172, 450, 468
BstMBI GATC 3 cut(s) 222, 295, 439
BstMWI GCNNNNNNNGC 4 cut(s) 14, 262, 482, 584
BstNI CCWGG 1 cut(s) 242
BstNSI RCATGY 3 cut(s) 39, 433, 517
BstSCI CCNGG 1 cut(s) 240
BstV1I GCAGC 2 cut(s) 125, 509
BstZ17I GTATAC 1 cut(s) 270
Bsu15I ATCGAT 1 cut(s) 409
BsuRI GGCC 3 cut(s) 17, 249, 283
BsuTUI ATCGAT 1 cut(s) 409
BtsCI GGATG 1 cut(s) 310
Cac8I GCNNGC 1 cut(s) 210
Cfr13I GGNCC 2 cut(s) 15, 336
ClaI ATCGAT 1 cut(s) 409
CseI GACGC 1 cut(s) 236
CsiI ACCWGGT 1 cut(s) 240
Csp6I GTAC 2 cut(s) 175, 387
CviAII CATG 3 cut(s) 36, 430, 514
CviQI GTAC 2 cut(s) 175, 387
DdeI CTNAG 2 cut(s) 130, 477
DpnI GATC 3 cut(s) 224, 297, 441
DpnII GATC 3 cut(s) 222, 295, 439
DriI GACNNNNNGTC 1 cut(s) 334
EaeI YGGCCR 1 cut(s) 247
Eam1104I CTCTTC 2 cut(s) 350, 558
Eam1105I GACNNNNNGTC 1 cut(s) 334
EarI CTCTTC 2 cut(s) 350, 558
Ecl136II GAGCTC 2 cut(s) 208, 343
Eco24I GRGCYC 3 cut(s) 210, 345, 553
Eco31I GGTCTC 2 cut(s) 133, 172
Eco47I GGWCC 1 cut(s) 336
Eco53kI GAGCTC 2 cut(s) 208, 343
Eco88I CYCGRG 1 cut(s) 203
EcoICRI GAGCTC 2 cut(s) 208, 343
EcoRII CCWGG 1 cut(s) 240
EcoT22I ATGCAT 1 cut(s) 519
EcoT38I GRGCYC 3 cut(s) 210, 345, 553
FaeI CATG 3 cut(s) 39, 433, 517
FalI AAGNNNNNCTT 2 cut(s) 537, 569
FatI CATG 3 cut(s) 35, 429, 513
FbaI TGATCA 1 cut(s) 295
FblI GTMKAC 2 cut(s) 151, 269
Fnu4HI GCNGC 5 cut(s) 139, 213, 281, 483, 498
FokI GGATG 1 cut(s) 317
FriOI GRGCYC 3 cut(s) 210, 345, 553
Fsp4HI GCNGC 5 cut(s) 139, 213, 281, 483, 498
GluI GCNGC 5 cut(s) 139, 213, 281, 483, 498
HaeIII GGCC 3 cut(s) 17, 249, 283
HgaI GACGC 1 cut(s) 236
Hin1II CATG 3 cut(s) 39, 433, 517
HinfI GANTC 1 cut(s) 537
Hpy166II GTNNAC 3 cut(s) 152, 270, 291
Hpy188I TCNGA 5 cut(s) 67, 133, 262, 340, 448
Hpy188III TCNNGA 3 cut(s) 302, 349, 467
Hpy8I GTNNAC 3 cut(s) 152, 270, 291
Hpy99I CGWCG 1 cut(s) 230
HpyAV CCTTC 3 cut(s) 453, 603, 611
HpyCH4V TGCA 5 cut(s) 180, 308, 324, 400, 517
HpyF10VI GCNNNNNNNGC 4 cut(s) 14, 262, 482, 584
HpyF3I CTNAG 2 cut(s) 130, 477
Hsp92II CATG 3 cut(s) 39, 433, 517
Ksp22I TGATCA 1 cut(s) 295
Kzo9I GATC 3 cut(s) 222, 295, 439
LguI GCTCTTC 2 cut(s) 350, 558
LmnI GCTCC 1 cut(s) 277
LpnPI CCDG 7 cut(s) 227, 229, 254, 266, 287, 319, 618
Lsp1109I GCAGC 2 cut(s) 125, 509
LweI GCATC 2 cut(s) 295, 526
MabI ACCWGGT 1 cut(s) 240
MaeIII GTNAC 1 cut(s) 432
MalI GATC 3 cut(s) 224, 297, 441
MbiI CCGCTC 2 cut(s) 265, 280
MboI GATC 3 cut(s) 222, 295, 439
MboII GAAGA 2 cut(s) 337, 545
MhlI GDGCHC 3 cut(s) 210, 345, 553
MlsI TGGCCA 1 cut(s) 249
MluCI AATT 2 cut(s) 19, 309
MluNI TGGCCA 1 cut(s) 249
MlyI GAGTC 1 cut(s) 546
MnlI CCTC 5 cut(s) 114, 118, 294, 377, 472
Mox20I TGGCCA 1 cut(s) 249
Mph1103I ATGCAT 1 cut(s) 519
MscI TGGCCA 1 cut(s) 249
MseI TTAA 2 cut(s) 312, 368
MslI CAYNNNNRTG 1 cut(s) 303
Msp20I TGGCCA 1 cut(s) 249
MspR9I CCNGG 1 cut(s) 242
MvaI CCWGG 1 cut(s) 242
MwoI GCNNNNNNNGC 4 cut(s) 14, 262, 482, 584
NdeII GATC 3 cut(s) 222, 295, 439
NlaIII CATG 3 cut(s) 39, 433, 517
NmuCI GTSAC 1 cut(s) 432
NsiI ATGCAT 1 cut(s) 519
NspI RCATGY 3 cut(s) 39, 433, 517
PciSI GCTCTTC 2 cut(s) 350, 558
PkrI GCNGC 5 cut(s) 140, 214, 282, 484, 499
PleI GAGTC 1 cut(s) 545
PpsI GAGTC 1 cut(s) 545
Psp124BI GAGCTC 2 cut(s) 210, 345
Psp6I CCWGG 1 cut(s) 240
PspGI CCWGG 1 cut(s) 240
PspPI GGNCC 2 cut(s) 15, 336
RsaI GTAC 2 cut(s) 176, 388
RsaNI GTAC 2 cut(s) 175, 387
RseI CAYNNNNRTG 1 cut(s) 303
SacI GAGCTC 2 cut(s) 210, 345
SapI GCTCTTC 2 cut(s) 350, 558
SaqAI TTAA 2 cut(s) 312, 368
SatI GCNGC 5 cut(s) 139, 213, 281, 483, 498
Sau3AI GATC 3 cut(s) 222, 295, 439
Sau96I GGNCC 2 cut(s) 15, 336
SchI GAGTC 1 cut(s) 546
ScrFI CCNGG 1 cut(s) 242
SduI GDGCHC 3 cut(s) 210, 345, 553
SetI ASST 8 cut(s) 129, 140, 210, 246, 258, 345, 388, 603
SexAI ACCWGGT 1 cut(s) 240
SfaNI GCATC 2 cut(s) 295, 526
SinI GGWCC 1 cut(s) 336
SmiMI CAYNNNNRTG 1 cut(s) 303
SmlI CTYRAG 1 cut(s) 465
SmoI CTYRAG 1 cut(s) 465
Sse9I AATT 2 cut(s) 19, 309
SsiI CCGC 4 cut(s) 213, 265, 280, 482
SstI GAGCTC 2 cut(s) 210, 345
StyD4I CCNGG 1 cut(s) 240
TaqI TCGA 2 cut(s) 225, 409
TasI AATT 2 cut(s) 19, 309
TatI WGTACW 1 cut(s) 174
TauI GCSGC 3 cut(s) 215, 283, 485
Tru1I TTAA 2 cut(s) 312, 368
Tru9I TTAA 2 cut(s) 312, 368
TseFI GTSAC 1 cut(s) 432
TseI GCWGC 2 cut(s) 138, 497
Tsp45I GTSAC 1 cut(s) 432
TspDTI ATGAA 3 cut(s) 307, 545, 603
VpaK11BI GGWCC 1 cut(s) 336
XceI RCATGY 3 cut(s) 39, 433, 517
XcmI CCANNNNNNNNNTGG 1 cut(s) 530
XmiI GTMKAC 2 cut(s) 151, 269
Zsp2I ATGCAT 1 cut(s) 519
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.